Wall clock time and date at job start Tue Mar 31 2020 10:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00022 * 3 2 1 5 5 H 1.48501 * 109.47199 * 30.00014 * 3 2 1 6 6 H 1.48498 * 109.47063 * 149.99438 * 3 2 1 7 7 C 1.38807 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00050 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00179 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00069 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.05421 * 34.96537 * 10 9 7 12 12 C 1.53869 * 110.03363 * 273.54686 * 10 9 7 13 13 C 1.54270 * 106.63967 * 240.69106 * 12 10 9 14 14 C 1.54961 * 104.16191 * 336.44607 * 13 12 10 15 15 H 1.09001 * 110.71970 * 279.57802 * 14 13 12 16 16 C 1.53000 * 110.76665 * 156.22182 * 14 13 12 17 17 N 1.46497 * 109.46887 * 71.63296 * 16 14 13 18 18 C 1.34777 * 119.99586 * 180.02562 * 17 16 14 19 19 O 1.21280 * 120.00339 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99563 * 179.97438 * 18 17 16 21 21 H 1.08997 * 110.43594 * 302.53604 * 20 18 17 22 22 C 1.54276 * 110.48438 * 179.97438 * 20 18 17 23 23 C 1.53865 * 106.59846 * 217.71116 * 22 20 18 24 24 C 1.54269 * 106.60120 * 359.97438 * 23 22 20 25 25 F 1.39905 * 110.48692 * 142.28591 * 24 23 22 26 26 F 1.39896 * 110.48889 * 264.79913 * 24 23 22 27 27 C 1.54890 * 104.19544 * 23.61457 * 24 23 22 28 28 C 1.54268 * 110.03046 * 156.37736 * 10 9 7 29 29 H 0.97009 * 120.00048 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99490 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.03268 * 0.02562 * 12 10 9 32 32 H 1.08995 * 110.03391 * 121.38499 * 12 10 9 33 33 H 1.08997 * 110.48585 * 95.09409 * 13 12 10 34 34 H 1.09002 * 110.48442 * 217.73292 * 13 12 10 35 35 H 1.08997 * 109.47063 * 191.63133 * 16 14 13 36 36 H 1.09001 * 109.46939 * 311.62903 * 16 14 13 37 37 H 0.97001 * 119.99899 * 359.97438 * 17 16 14 38 38 H 1.09002 * 110.03121 * 336.99838 * 22 20 18 39 39 H 1.09002 * 110.02615 * 98.42383 * 22 20 18 40 40 H 1.09001 * 110.03798 * 119.28797 * 23 22 20 41 41 H 1.09002 * 110.03313 * 240.66808 * 23 22 20 42 42 H 1.09001 * 110.75888 * 203.74578 * 27 24 23 43 43 H 1.09000 * 110.76061 * 80.36593 * 27 24 23 44 44 H 1.08997 * 110.48788 * 261.57351 * 28 10 9 45 45 H 1.09000 * 110.48806 * 24.08651 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5725 -3.2140 -0.5861 12 6 4.2976 -2.9724 1.4438 13 6 5.8182 -3.0543 1.6910 14 6 6.4258 -3.1947 0.2724 15 1 6.3560 -4.2249 -0.0768 16 6 7.8774 -2.7114 0.2538 17 7 8.7216 -3.6737 0.9661 18 6 10.0466 -3.4539 1.0784 19 8 10.5400 -2.4598 0.5894 20 6 10.9149 -4.4435 1.8117 21 1 10.5601 -4.5773 2.8336 22 6 12.3859 -3.9784 1.8070 23 6 13.2463 -5.2434 1.6428 24 6 12.2684 -6.4332 1.5541 25 9 12.7296 -7.3784 0.6314 26 9 12.0974 -7.0214 2.8118 27 6 10.9427 -5.7995 1.0640 28 6 5.5265 -2.2645 -0.5791 29 1 -0.4851 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0014 31 1 3.8423 -2.2721 2.1441 32 1 3.8474 -3.9586 1.5572 33 1 6.1762 -2.1434 2.1707 34 1 6.0595 -3.9266 2.2984 35 1 8.2177 -2.6234 -0.7780 36 1 7.9429 -1.7391 0.7421 37 1 8.3268 -4.4686 1.3575 38 1 12.5596 -3.2978 0.9735 39 1 12.6242 -3.4843 2.7489 40 1 13.8378 -5.1768 0.7296 41 1 13.9029 -5.3628 2.5046 42 1 10.0907 -6.4161 1.3504 43 1 10.9640 -5.6450 -0.0148 44 1 5.5558 -2.5608 -1.6276 45 1 5.8363 -1.2253 -0.4685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086713615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:35 Heat of formation + Delta-G solvation = -149.505125 kcal Electronic energy + Delta-G solvation = -26317.527443 eV Core-core repulsion = 22197.613827 eV Total energy + Delta-G solvation = -4119.913617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.33633 -47.46132 -40.41546 -38.44348 -37.03347 -35.16582 -33.47346 -31.20375 -30.24238 -29.09296 -28.55374 -27.53214 -24.63831 -22.75994 -22.50174 -21.55977 -20.65942 -19.86660 -19.35072 -18.35135 -17.56233 -17.51652 -17.00060 -16.51932 -16.18610 -15.70178 -15.33264 -14.98698 -14.63711 -14.53810 -14.39163 -13.99676 -13.78820 -13.62871 -13.48804 -13.04306 -12.81316 -12.71901 -12.65272 -12.39472 -12.10260 -12.05941 -11.94309 -11.53257 -11.25164 -11.21945 -10.91292 -10.85774 -10.69848 -10.58150 -10.44803 -10.35492 -10.09921 -9.87045 -9.59694 -9.29694 -8.93119 -7.27278 -5.78402 -3.13799 2.26251 2.80724 3.22122 3.29722 3.36667 3.39718 3.44731 3.63012 3.87026 4.32886 4.47312 4.57002 4.57893 4.65692 4.66863 4.72181 4.76964 4.85162 4.91231 5.00117 5.27667 5.32093 5.33874 5.45483 5.53113 5.54713 5.60178 5.61828 5.68268 5.81090 5.90936 5.93763 6.01754 6.16543 6.20754 6.23632 6.47774 6.56717 6.77010 7.00495 7.19758 7.90323 7.99143 8.41247 9.19994 9.92766 10.12391 11.39962 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.002179 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.858174 B =12848.582990 C =13274.483693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.747 5.747 10 C 0.180 3.820 11 H 0.058 0.942 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.105 4.105 15 H 0.081 0.919 16 C 0.126 3.874 17 N -0.723 5.723 18 C 0.520 3.480 19 O -0.535 6.535 20 C -0.115 4.115 21 H 0.112 0.888 22 C -0.110 4.110 23 C -0.161 4.161 24 C 0.280 3.720 25 F -0.196 7.196 26 F -0.193 7.193 27 C -0.149 4.149 28 C -0.122 4.122 29 H 0.259 0.741 30 H 0.361 0.639 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.057 -13.545 4.259 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.389 5.389 10 C 0.070 3.930 11 H 0.076 0.924 12 C -0.186 4.186 13 C -0.154 4.154 14 C -0.124 4.124 15 H 0.100 0.900 16 C 0.003 3.997 17 N -0.374 5.374 18 C 0.305 3.695 19 O -0.412 6.412 20 C -0.136 4.136 21 H 0.130 0.870 22 C -0.148 4.148 23 C -0.199 4.199 24 C 0.244 3.756 25 F -0.177 7.177 26 F -0.174 7.174 27 C -0.187 4.187 28 C -0.160 4.160 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 27.139 -12.899 3.890 30.299 hybrid contribution 0.254 0.595 0.363 0.742 sum 27.392 -12.305 4.253 30.329 Atomic orbital electron populations 1.69703 1.05116 1.25812 1.57577 1.24683 0.95241 0.97229 1.02086 0.86556 0.79210 0.84997 0.77793 1.21088 1.21790 1.20312 1.19087 0.80689 0.94660 1.42899 0.89251 1.42903 1.03998 1.01946 1.90102 1.20787 0.90042 0.89127 0.92996 0.92433 1.22947 0.93887 1.01039 1.00775 1.22431 0.96962 1.00830 0.95128 1.22370 0.92259 1.00239 0.97574 0.90049 1.21491 0.89135 0.92241 0.96852 1.46050 1.07463 1.26542 1.57340 1.20210 0.82509 0.86681 0.80069 1.90718 1.73514 1.29079 1.47892 1.22119 0.96900 0.93679 1.00929 0.87001 1.22057 0.90786 0.96763 1.05145 1.23169 0.98218 0.92746 1.05795 1.21862 0.96042 0.84154 0.73545 1.93024 1.90193 1.68218 1.66220 1.93026 1.96327 1.86112 1.41903 1.23419 0.96582 0.95728 1.03007 1.22638 0.95513 0.99175 0.98722 0.93078 0.80635 0.90860 0.92878 0.91918 0.92658 0.91370 0.91160 0.76450 0.88370 0.89976 0.88235 0.88780 0.88118 0.87555 0.91501 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.24 -6.75 10.44 -15.06 -0.16 -6.90 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 9 N -0.75 -17.15 4.84 -52.34 -0.25 -17.41 16 10 C 0.18 3.24 3.55 -66.82 -0.24 3.01 16 11 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 12 C -0.15 -2.33 6.59 -25.61 -0.17 -2.50 16 13 C -0.12 -1.39 6.21 -25.03 -0.16 -1.54 16 14 C -0.11 -1.14 2.91 -88.58 -0.26 -1.40 16 15 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 16 C 0.13 1.31 5.11 -4.04 -0.02 1.29 16 17 N -0.72 -6.00 5.46 -60.30 -0.33 -6.33 16 18 C 0.52 4.89 7.13 -10.98 -0.08 4.81 16 19 O -0.54 -7.19 15.42 5.56 0.09 -7.10 16 20 C -0.11 -0.72 3.25 -90.12 -0.29 -1.02 16 21 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 22 C -0.11 -0.68 6.18 -25.61 -0.16 -0.84 16 23 C -0.16 -0.87 6.41 -25.62 -0.16 -1.04 16 24 C 0.28 1.92 2.49 -25.07 -0.06 1.86 16 25 F -0.20 -1.68 17.16 2.25 0.04 -1.64 16 26 F -0.19 -1.58 17.17 2.25 0.04 -1.54 16 27 C -0.15 -0.83 5.90 -24.75 -0.15 -0.98 16 28 C -0.12 -1.71 5.97 -25.07 -0.15 -1.86 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.36 8.20 5.40 -40.82 -0.22 7.98 16 31 H 0.07 1.37 7.92 -51.93 -0.41 0.96 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 37 H 0.40 2.37 8.47 -40.82 -0.35 2.02 16 38 H 0.10 0.77 6.85 -51.93 -0.36 0.41 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.48 8.11 -51.93 -0.42 0.06 16 41 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.61 8.05 -51.93 -0.42 0.19 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.01 7.64 -51.93 -0.40 0.61 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -33.16 366.21 -8.20 -41.36 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.21 Total: 5.40 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.14 Total: -7.12 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.19 Total: -52.15 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.16 -8.20 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086713615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.149 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds