Wall clock time and date at job start Tue Mar 31 2020 12:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.86824 * 2 1 4 4 C 1.54462 * 109.87603 * 239.00118 * 2 1 3 5 5 C 1.54390 * 102.86909 * 218.92195 * 4 2 1 6 6 C 1.54122 * 102.47868 * 34.63974 * 5 4 2 7 7 N 1.47080 * 110.00171 * 121.08974 * 2 1 3 8 8 C 1.34776 * 125.63079 * 298.50062 * 7 2 1 9 9 O 1.21282 * 119.99437 * 0.02562 * 8 7 2 10 10 C 1.50697 * 120.00105 * 180.02562 * 8 7 2 11 11 C 1.53000 * 109.47096 * 205.00451 * 10 8 7 12 12 F 1.39891 * 109.47325 * 325.00341 * 10 8 7 13 13 F 1.39901 * 109.46899 * 85.00662 * 10 8 7 14 14 C 1.52106 * 110.51038 * 152.62389 * 5 4 2 15 15 C 1.53343 * 109.44725 * 64.11913 * 14 5 4 16 16 N 1.46933 * 108.68935 * 53.29166 * 15 14 5 17 17 C 1.36939 * 120.54872 * 125.65504 * 16 15 14 18 18 H 1.07994 * 120.00108 * 331.86494 * 17 16 15 19 19 C 1.38813 * 119.99470 * 151.86330 * 17 16 15 20 20 N 1.31615 * 120.00503 * 342.89282 * 19 17 16 21 21 Si 1.86802 * 119.99441 * 162.88876 * 19 17 16 22 22 H 1.48502 * 109.47517 * 266.24442 * 21 19 17 23 23 H 1.48500 * 109.47648 * 26.24919 * 21 19 17 24 24 H 1.48504 * 109.46805 * 146.24713 * 21 19 17 25 25 C 1.46921 * 118.89381 * 305.93047 * 16 15 14 26 26 C 1.52109 * 110.51663 * 276.66076 * 5 4 2 27 27 H 1.09002 * 109.46902 * 180.99972 * 1 2 3 28 28 H 1.08997 * 109.47252 * 300.99797 * 1 2 3 29 29 H 1.09003 * 109.47448 * 61.00361 * 1 2 3 30 30 H 1.08997 * 110.73738 * 100.57768 * 4 2 1 31 31 H 1.09006 * 110.73413 * 337.26428 * 4 2 1 32 32 H 1.09001 * 110.37765 * 82.75067 * 6 5 4 33 33 H 1.08998 * 110.37945 * 205.09235 * 6 5 4 34 34 H 1.08999 * 109.47553 * 59.99987 * 11 10 8 35 35 H 1.09000 * 109.47475 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.46887 * 300.00028 * 11 10 8 37 37 H 1.08997 * 109.47929 * 304.11823 * 14 5 4 38 38 H 1.09006 * 109.47877 * 184.10821 * 14 5 4 39 39 H 1.09002 * 109.59715 * 293.53608 * 15 14 5 40 40 H 1.08995 * 109.60219 * 173.05815 * 15 14 5 41 41 H 0.97001 * 119.99859 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.60048 * 173.83703 * 25 16 15 43 43 H 1.08999 * 109.59996 * 294.30736 * 25 16 15 44 44 H 1.09003 * 109.47238 * 55.87544 * 26 5 4 45 45 H 1.08995 * 109.47561 * 175.88836 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0552 -0.7481 -1.2451 5 6 3.2733 -1.5202 -0.6941 6 6 2.8221 -1.8776 0.7356 7 7 2.0331 -0.7137 1.1836 8 6 1.8105 -0.3626 2.4656 9 8 1.1436 0.6183 2.7185 10 6 2.3902 -1.1887 3.5847 11 6 1.5433 -1.0053 4.8456 12 9 2.3912 -2.5382 3.2159 13 9 3.7018 -0.7739 3.8394 14 6 3.5199 -2.7796 -1.5106 15 6 3.8926 -2.3922 -2.9467 16 7 5.0135 -1.4432 -2.9025 17 6 6.1630 -1.6907 -3.6044 18 1 6.4611 -2.7078 -3.8112 19 6 6.9451 -0.6339 -4.0500 20 7 6.4408 0.5805 -4.1053 21 14 8.7134 -0.9356 -4.5712 22 1 9.6178 -0.6897 -3.4193 23 1 8.8624 -2.3413 -5.0263 24 1 9.0657 -0.0156 -5.6823 25 6 4.8827 -0.2275 -2.0879 26 6 4.5021 -0.6243 -0.6616 27 1 -0.3633 -1.0275 0.0179 28 1 -0.3633 0.5292 0.8809 29 1 -0.3634 0.4982 -0.8989 30 1 2.3624 -0.0434 -2.0178 31 1 1.3022 -1.4374 -1.6273 32 1 2.2028 -2.7745 0.7251 33 1 3.6878 -2.0209 1.3822 34 1 0.5214 -1.3284 4.6472 35 1 1.9629 -1.6025 5.6552 36 1 1.5426 0.0462 5.1330 37 1 2.6160 -3.3886 -1.5213 38 1 4.3358 -3.3482 -1.0642 39 1 3.0366 -1.9245 -3.4330 40 1 4.1892 -3.2829 -3.5004 41 1 6.9872 1.3189 -4.4171 42 1 5.8319 0.3084 -2.0758 43 1 4.1050 0.4112 -2.5065 44 1 4.2836 0.2713 -0.0798 45 1 5.3319 -1.1620 -0.2030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086897416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:34 Heat of formation + Delta-G solvation = -112.462897 kcal Electronic energy + Delta-G solvation = -28817.317898 eV Core-core repulsion = 24699.010553 eV Total energy + Delta-G solvation = -4118.307345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.38428 -47.36389 -40.63108 -38.74918 -36.17136 -33.22104 -32.21584 -31.45767 -30.88919 -30.03822 -27.30986 -26.14186 -25.21821 -24.01312 -22.43904 -21.63464 -21.01529 -19.80230 -18.27605 -17.95022 -17.82777 -17.04683 -16.45066 -16.01386 -15.51336 -14.94098 -14.54658 -14.18406 -14.05942 -13.96872 -13.79599 -13.69393 -13.54376 -13.43846 -13.08338 -12.89396 -12.81186 -12.74258 -12.63085 -12.33937 -12.23856 -12.05016 -11.76831 -11.46424 -11.19615 -10.95365 -10.76021 -10.70973 -10.51851 -10.25101 -10.10650 -10.00169 -9.86902 -9.56245 -9.47422 -8.79167 -8.46815 -6.67746 -5.80520 -3.23071 2.02420 2.42001 3.37102 3.44631 3.45384 3.47904 3.68213 4.13690 4.31513 4.48482 4.60860 4.73161 4.98645 5.11034 5.17375 5.26122 5.30291 5.34440 5.37510 5.51011 5.55150 5.60516 5.63302 5.71567 5.77467 5.95849 6.00639 6.06410 6.11160 6.23075 6.26835 6.36101 6.45187 6.58331 6.64017 6.70388 6.81744 6.93961 7.22434 7.34041 7.63870 7.65075 7.78703 8.43951 9.20060 9.83511 10.39665 11.27868 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003831 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.952750 B = 7307.660310 C = 7714.981586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.081 0.919 4 C -0.119 4.119 5 C -0.056 4.056 6 C 0.101 3.899 7 N -0.589 5.589 8 C 0.498 3.502 9 O -0.512 6.512 10 C 0.283 3.717 11 C -0.180 4.180 12 F -0.188 7.188 13 F -0.181 7.181 14 C -0.118 4.118 15 C 0.148 3.852 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.292 1.292 25 C 0.173 3.827 26 C -0.127 4.127 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.054 0.946 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.048 0.952 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.657 -4.462 13.672 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.057 4.057 6 C -0.021 4.021 7 N -0.321 5.321 8 C 0.281 3.719 9 O -0.388 6.388 10 C 0.243 3.757 11 C -0.238 4.238 12 F -0.169 7.169 13 F -0.162 7.162 14 C -0.157 4.157 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.218 1.218 25 C 0.047 3.953 26 C -0.166 4.166 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.910 -3.787 13.778 18.602 hybrid contribution 1.174 -0.239 -0.208 1.216 sum -10.736 -4.026 13.570 17.766 Atomic orbital electron populations 1.22127 0.94621 1.02194 1.02891 1.21790 0.94354 0.96759 0.83983 0.90145 1.22832 0.97043 0.99781 0.95967 1.21029 0.95673 0.97009 0.91953 1.22751 0.94857 0.87565 0.96940 1.48692 1.50199 1.28715 1.04502 1.20341 0.82446 0.86097 0.83061 1.90743 1.39086 1.26330 1.82671 1.21326 0.81204 0.77075 0.96048 1.22616 1.00575 1.06408 0.94172 1.93060 1.96539 1.34494 1.92780 1.93098 1.38165 1.90001 1.94965 1.21855 1.00280 0.94918 0.98688 1.20902 0.90952 0.93748 0.92292 1.44021 1.12958 1.21740 1.52614 1.19202 0.98228 0.92138 1.28731 0.91702 1.25027 0.99317 0.96126 0.99029 1.70024 1.34966 0.99660 1.49985 0.86300 0.85284 0.77477 0.77842 1.21496 1.20400 1.21803 1.20704 1.01029 0.88386 0.85146 1.21959 0.95337 0.97665 1.01647 0.92538 0.91593 0.91240 0.88617 0.90627 0.90665 0.90397 0.88936 0.89204 0.88106 0.92777 0.91938 0.96258 0.92736 0.93655 0.89479 0.96247 0.93329 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.10 37.16 0.34 -1.57 16 2 C 0.13 1.82 3.08 -66.85 -0.21 1.62 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.12 -1.67 4.45 -25.24 -0.11 -1.79 16 5 C -0.06 -0.85 0.55 -154.10 -0.08 -0.94 16 6 C 0.10 1.37 4.36 -2.87 -0.01 1.36 16 7 N -0.59 -8.25 3.06 -163.26 -0.50 -8.75 16 8 C 0.50 7.05 7.08 -10.99 -0.08 6.97 16 9 O -0.51 -8.14 15.14 5.56 0.08 -8.05 16 10 C 0.28 3.42 2.05 -27.88 -0.06 3.36 16 11 C -0.18 -1.58 8.92 37.16 0.33 -1.25 16 12 F -0.19 -2.26 14.53 2.25 0.03 -2.22 16 13 F -0.18 -2.45 17.05 2.25 0.04 -2.41 16 14 C -0.12 -1.85 4.84 -27.01 -0.13 -1.98 16 15 C 0.15 2.87 6.25 -3.63 -0.02 2.84 16 16 N -0.59 -14.07 2.99 -172.42 -0.51 -14.58 16 17 C -0.25 -6.76 9.57 -15.06 -0.14 -6.90 16 18 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 19 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -25.67 11.21 55.49 0.62 -25.05 16 21 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.17 3.93 4.99 -3.88 -0.02 3.91 16 26 C -0.13 -2.33 4.84 -27.25 -0.13 -2.46 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.86 6.90 -51.93 -0.36 0.50 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.53 6.19 -51.93 -0.32 1.21 16 31 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 32 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.08 1.10 7.12 -51.93 -0.37 0.73 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.38 7.62 -51.93 -0.40 -0.02 16 40 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 42 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 43 H 0.02 0.46 6.56 -51.93 -0.34 0.12 16 44 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -29.42 350.74 -7.46 -36.88 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.06 Total: -0.68 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.41 Total: 3.20 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.39 Total: -48.39 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.08 Total: -8.05 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.42 -7.46 -36.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086897416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.587 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds