Wall clock time and date at job start Tue Mar 31 2020 12:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 110.31580 * 2 1 4 4 C 1.55013 * 110.35481 * 122.20106 * 2 1 3 5 5 C 1.54539 * 101.53182 * 155.24720 * 4 2 1 6 6 C 1.53677 * 103.63688 * 325.16665 * 5 4 2 7 7 N 1.47175 * 107.11833 * 21.55286 * 6 5 4 8 8 C 1.34775 * 125.66926 * 181.47372 * 7 6 5 9 9 O 1.21274 * 120.00754 * 180.02562 * 8 7 6 10 10 C 1.50705 * 119.99459 * 0.02863 * 8 7 6 11 11 C 1.53002 * 109.47088 * 204.99544 * 10 8 7 12 12 F 1.39902 * 109.47437 * 324.99999 * 10 8 7 13 13 F 1.39909 * 109.47152 * 84.99624 * 10 8 7 14 14 C 1.52275 * 110.15971 * 83.58674 * 5 4 2 15 15 C 1.53303 * 109.47011 * 181.98523 * 14 5 4 16 16 N 1.46934 * 108.83776 * 306.41417 * 15 14 5 17 17 C 1.36931 * 120.58908 * 234.37467 * 16 15 14 18 18 H 1.08001 * 120.00354 * 152.43776 * 17 16 15 19 19 C 1.38816 * 120.00104 * 332.43621 * 17 16 15 20 20 N 1.31618 * 120.00034 * 159.33338 * 19 17 16 21 21 Si 1.86799 * 119.99800 * 339.33518 * 19 17 16 22 22 H 1.48501 * 109.47309 * 93.28383 * 21 19 17 23 23 H 1.48506 * 109.46960 * 213.28301 * 21 19 17 24 24 H 1.48495 * 109.47363 * 333.28420 * 21 19 17 25 25 C 1.47241 * 118.62196 * 54.22417 * 16 15 14 26 26 C 1.52269 * 110.16239 * 206.73136 * 5 4 2 27 27 H 1.08992 * 109.47805 * 297.79700 * 1 2 3 28 28 H 1.09003 * 109.47301 * 57.80443 * 1 2 3 29 29 H 1.09001 * 109.47149 * 177.79467 * 1 2 3 30 30 H 1.09004 * 111.01306 * 37.18793 * 4 2 1 31 31 H 1.09004 * 111.01962 * 273.31455 * 4 2 1 32 32 H 1.09004 * 109.90643 * 140.92352 * 6 5 4 33 33 H 1.08995 * 109.90897 * 262.18215 * 6 5 4 34 34 H 1.09003 * 109.46790 * 60.00168 * 11 10 8 35 35 H 1.09005 * 109.46715 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47300 * 299.99978 * 11 10 8 37 37 H 1.09005 * 109.47206 * 61.98471 * 14 5 4 38 38 H 1.08998 * 109.46989 * 301.98294 * 14 5 4 39 39 H 1.09004 * 109.59731 * 66.26173 * 15 14 5 40 40 H 1.08998 * 109.59710 * 186.57167 * 15 14 5 41 41 H 0.97005 * 120.00022 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.53426 * 186.01496 * 25 16 15 43 43 H 1.08996 * 109.69453 * 65.68170 * 25 16 15 44 44 H 1.09002 * 109.47384 * 298.02157 * 26 5 4 45 45 H 1.09001 * 109.46882 * 58.02143 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0691 -0.7745 1.2298 5 6 3.4658 -1.2104 0.7323 6 6 3.2493 -1.4798 -0.7651 7 7 2.0430 -0.7393 -1.1685 8 6 1.4980 -0.7367 -2.4011 9 8 0.4983 -0.0862 -2.6208 10 6 2.1308 -1.5423 -3.5064 11 6 1.7626 -0.9295 -4.8592 12 9 3.5214 -1.5328 -3.3531 13 9 1.6643 -2.8601 -3.4489 14 6 4.4705 -0.0844 0.9360 15 6 5.8377 -0.5150 0.3925 16 7 6.2100 -1.7970 1.0065 17 6 7.4062 -1.9360 1.6582 18 1 7.5065 -2.6586 2.4547 19 6 8.4901 -1.1484 1.2953 20 7 9.4859 -0.9707 2.1375 21 14 8.5355 -0.3407 -0.3884 22 1 7.9757 1.0316 -0.2944 23 1 9.9398 -0.2708 -0.8663 24 1 7.7270 -1.1406 -1.3432 25 6 5.2693 -2.9254 0.9087 26 6 3.9055 -2.4799 1.4490 27 1 -0.3634 0.4792 0.9090 28 1 -0.3634 0.5476 -0.8697 29 1 -0.3633 -1.0269 -0.0395 30 1 1.4451 -1.6404 1.4507 31 1 2.1500 -0.1212 2.0986 32 1 4.1093 -1.1264 -1.3340 33 1 3.1031 -2.5468 -0.9329 34 1 2.1261 0.0972 -4.9039 35 1 2.2208 -1.5120 -5.6586 36 1 0.6792 -0.9370 -4.9787 37 1 4.5560 0.1383 1.9996 38 1 4.1320 0.8050 0.4046 39 1 5.7809 -0.6308 -0.6899 40 1 6.5840 0.2396 0.6407 41 1 10.2431 -0.4200 1.8840 42 1 5.6412 -3.7622 1.5001 43 1 5.1682 -3.2302 -0.1329 44 1 3.9845 -2.2847 2.5184 45 1 3.1716 -3.2672 1.2766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086897417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:37 Heat of formation + Delta-G solvation = -103.277334 kcal Electronic energy + Delta-G solvation = -29201.190159 eV Core-core repulsion = 25083.281130 eV Total energy + Delta-G solvation = -4117.909029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.37313 -47.36310 -40.78289 -38.90765 -36.38963 -33.29417 -32.37408 -31.52122 -31.14121 -30.57062 -27.61005 -26.18849 -25.11376 -24.00649 -22.95133 -21.95325 -20.98110 -19.94295 -18.71114 -17.99857 -17.67409 -17.03651 -16.50708 -16.24087 -15.59026 -15.31289 -14.73599 -14.38011 -14.20836 -14.04990 -13.93828 -13.76762 -13.66653 -13.60029 -13.23130 -12.97678 -12.84158 -12.73989 -12.57972 -12.36359 -12.16449 -12.12276 -12.00518 -11.87239 -11.73297 -11.26067 -11.01275 -10.87182 -10.66488 -10.52270 -10.14463 -9.87749 -9.81682 -9.64277 -9.43622 -8.87633 -8.62371 -6.98695 -5.96565 -3.32171 1.95439 2.35570 3.30155 3.45801 3.47867 3.50557 3.66456 4.12097 4.31092 4.44329 4.51447 4.57458 4.76139 4.91136 5.05349 5.12428 5.16290 5.23293 5.26752 5.35127 5.43229 5.52077 5.55235 5.58719 5.72976 5.73726 5.79988 5.85344 5.97568 6.00703 6.01175 6.14297 6.27645 6.28553 6.36181 6.42804 6.60625 6.62426 6.64282 6.88934 7.14921 7.58736 7.94044 8.31135 8.92039 9.70452 10.08368 11.19444 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.004970 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.900730 B = 5632.191142 C = 6424.851997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.082 0.918 4 C -0.122 4.122 5 C -0.056 4.056 6 C 0.096 3.904 7 N -0.593 5.593 8 C 0.500 3.500 9 O -0.511 6.511 10 C 0.281 3.719 11 C -0.180 4.180 12 F -0.183 7.183 13 F -0.183 7.183 14 C -0.121 4.121 15 C 0.124 3.876 16 N -0.604 5.604 17 C -0.259 4.259 18 H 0.086 0.914 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.879 3.121 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.269 1.269 25 C 0.145 3.855 26 C -0.119 4.119 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 0.490 -8.255 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.100 0.900 4 C -0.160 4.160 5 C -0.057 4.057 6 C -0.026 4.026 7 N -0.325 5.325 8 C 0.284 3.716 9 O -0.387 6.387 10 C 0.242 3.758 11 C -0.238 4.238 12 F -0.164 7.164 13 F -0.164 7.164 14 C -0.160 4.160 15 C -0.001 4.001 16 N -0.327 5.327 17 C -0.387 4.387 18 H 0.103 0.897 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.710 3.290 22 H -0.217 1.217 23 H -0.231 1.231 24 H -0.194 1.194 25 C 0.019 3.981 26 C -0.158 4.158 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.423 0.847 -8.387 20.260 hybrid contribution 0.410 0.316 -0.908 1.045 sum -18.012 1.163 -9.295 20.302 Atomic orbital electron populations 1.22144 0.93760 1.02788 1.03268 1.22095 0.95028 0.95840 0.84039 0.90028 1.22988 0.96059 1.00366 0.96583 1.20976 0.94518 0.97712 0.92506 1.22633 0.86709 0.96418 0.96858 1.48740 1.28273 1.46983 1.08550 1.20346 0.85113 0.83379 0.82804 1.90702 1.24260 1.42649 1.81110 1.21361 0.76330 0.80152 0.97974 1.22622 1.05678 1.03165 0.92330 1.93094 1.30253 1.96421 1.96659 1.93079 1.88332 1.37516 1.97510 1.21948 0.96164 0.95608 1.02280 1.21389 0.94299 0.89367 0.95088 1.44385 1.18029 1.05254 1.65064 1.18909 0.85818 1.22176 1.11768 0.89682 1.25267 0.95594 0.98932 0.97663 1.69834 1.10379 1.40542 1.34371 0.87001 0.75873 0.78864 0.87267 1.21720 1.23141 1.19441 1.21029 0.88459 0.90876 0.97711 1.21917 0.98648 0.94720 1.00541 0.91710 0.90026 0.92613 0.90435 0.89408 0.89139 0.90802 0.88853 0.89122 0.88157 0.90926 0.92777 0.95694 0.90838 0.92778 0.91666 0.95870 0.91073 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.60 37.15 0.32 -1.47 16 2 C 0.13 1.58 3.44 -66.33 -0.23 1.35 16 3 H 0.08 0.97 7.76 -51.93 -0.40 0.57 16 4 C -0.12 -1.39 5.41 -24.86 -0.13 -1.53 16 5 C -0.06 -0.79 0.53 -154.09 -0.08 -0.88 16 6 C 0.10 1.37 3.88 -3.32 -0.01 1.35 16 7 N -0.59 -8.02 3.25 -163.22 -0.53 -8.55 16 8 C 0.50 6.88 7.07 -10.98 -0.08 6.80 16 9 O -0.51 -7.56 13.82 5.56 0.08 -7.49 16 10 C 0.28 3.51 2.22 -27.88 -0.06 3.44 16 11 C -0.18 -1.67 8.92 37.16 0.33 -1.34 16 12 F -0.18 -2.56 14.24 2.25 0.03 -2.52 16 13 F -0.18 -2.39 17.05 2.25 0.04 -2.36 16 14 C -0.12 -1.98 4.77 -26.94 -0.13 -2.10 16 15 C 0.12 2.59 3.91 -3.65 -0.01 2.57 16 16 N -0.60 -13.67 2.77 -171.92 -0.48 -14.15 16 17 C -0.26 -7.02 10.05 -15.06 -0.15 -7.17 16 18 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 20 N -0.91 -27.50 13.97 55.49 0.78 -26.73 16 21 Si 0.88 22.14 24.36 -169.99 -4.14 18.00 16 22 H -0.29 -7.03 6.63 56.52 0.37 -6.66 16 23 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 24 H -0.27 -6.68 6.64 56.52 0.38 -6.30 16 25 C 0.15 2.68 6.25 -3.48 -0.02 2.66 16 26 C -0.12 -1.76 4.70 -26.95 -0.13 -1.88 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.03 6.09 -51.93 -0.32 0.71 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 31 H 0.09 0.92 8.01 -51.93 -0.42 0.50 16 32 H 0.09 1.45 4.77 -51.93 -0.25 1.21 16 33 H 0.07 1.04 7.60 -51.93 -0.39 0.65 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.80 7.49 -51.93 -0.39 0.42 16 39 H 0.03 0.53 5.52 -51.93 -0.29 0.24 16 40 H 0.07 1.71 4.45 -51.93 -0.23 1.48 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 43 H 0.02 0.42 7.50 -51.93 -0.39 0.03 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -30.60 341.05 -6.44 -37.04 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.87 Total: -0.81 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.48 Total: 2.41 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.23 Total: -49.42 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.08 Total: -7.49 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.07 Total: -4.88 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.60 -6.44 -37.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086897417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.235 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds