Wall clock time and date at job start Tue Mar 31 2020 11:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39900 * 109.47022 * 2 1 4 4 F 1.39899 * 109.47154 * 240.00378 * 2 1 3 5 5 C 1.50702 * 109.47456 * 120.00214 * 2 1 3 6 6 O 1.21282 * 119.99849 * 24.99957 * 5 2 1 7 7 N 1.34777 * 119.99975 * 205.00326 * 5 2 1 8 8 C 1.46495 * 119.99858 * 179.97438 * 7 5 2 9 9 H 1.09005 * 112.92959 * 23.67433 * 8 7 5 10 10 C 1.54151 * 113.64057 * 252.34330 * 8 7 5 11 11 H 1.08999 * 114.24110 * 104.29642 * 10 8 7 12 12 C 1.53058 * 111.69091 * 333.52221 * 10 8 7 13 13 C 1.53020 * 109.40832 * 213.59592 * 12 10 8 14 14 C 1.52942 * 108.93379 * 64.64475 * 13 12 10 15 15 N 1.44104 * 109.36631 * 302.76523 * 14 13 12 16 16 C 1.36940 * 117.16294 * 218.93246 * 15 14 13 17 17 H 1.07999 * 120.00059 * 151.52073 * 16 15 14 18 18 C 1.38807 * 119.99661 * 331.51411 * 16 15 14 19 19 N 1.31623 * 120.00234 * 343.35114 * 18 16 15 20 20 Si 1.86801 * 120.00074 * 163.35840 * 18 16 15 21 21 H 1.48507 * 109.47132 * 59.99670 * 20 18 16 22 22 H 1.48501 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46887 * 299.99846 * 20 18 16 24 24 C 1.45094 * 124.34783 * 39.76900 * 15 14 13 25 25 H 1.09004 * 112.25596 * 203.33782 * 24 15 14 26 26 C 1.53389 * 114.62651 * 72.89132 * 24 15 14 27 27 C 1.52998 * 113.68495 * 332.08948 * 26 24 15 28 28 C 1.52999 * 113.68501 * 103.21651 * 26 24 15 29 29 H 1.08998 * 109.46803 * 299.99457 * 1 2 3 30 30 H 1.08997 * 109.47176 * 59.99738 * 1 2 3 31 31 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99662 * 359.97438 * 7 5 2 33 33 H 1.09002 * 109.48054 * 333.57255 * 12 10 8 34 34 H 1.09002 * 109.48624 * 93.60904 * 12 10 8 35 35 H 1.09005 * 109.56169 * 184.48201 * 13 12 10 36 36 H 1.09005 * 109.56122 * 304.80601 * 13 12 10 37 37 H 1.09002 * 109.39970 * 62.78062 * 14 13 12 38 38 H 1.08999 * 109.39754 * 182.52524 * 14 13 12 39 39 H 0.96994 * 120.00371 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.47570 * 91.86904 * 27 26 24 41 41 H 1.09002 * 109.46585 * 211.86369 * 27 26 24 42 42 H 1.09003 * 109.47104 * 331.86028 * 27 26 24 43 43 H 1.09002 * 109.47548 * 59.99876 * 28 26 24 44 44 H 1.09002 * 109.47533 * 180.02562 * 28 26 24 45 45 H 1.09007 * 109.47223 * 300.00613 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.3371 -1.5394 1.7784 7 7 3.2544 -0.4245 1.7219 8 6 3.7426 -1.1148 2.9183 9 1 3.2590 -2.0783 3.0798 10 6 3.7784 -0.2229 4.1751 11 1 2.9750 -0.4180 4.8854 12 6 3.9344 1.2564 3.8147 13 6 4.7620 1.9581 4.8937 14 6 6.1758 1.3748 4.8926 15 7 6.1055 -0.0487 5.1051 16 6 7.0662 -0.6098 5.9036 17 1 6.8457 -1.5049 6.4662 18 6 8.3236 -0.0280 5.9897 19 7 8.7079 0.8459 5.0836 20 14 9.4704 -0.4855 7.3915 21 1 9.7517 -1.9430 7.3453 22 1 10.7426 0.2683 7.2564 23 1 8.8285 -0.1461 8.6869 24 6 5.1013 -0.9156 4.5175 25 1 4.9627 -1.8334 5.0889 26 6 5.2772 -1.1708 3.0152 27 6 5.9818 -0.0312 2.2766 28 6 5.8638 -2.5459 2.6899 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8106 0.2382 1.2834 33 1 4.4407 1.3450 2.8534 34 1 2.9504 1.7211 3.7516 35 1 4.8077 3.0264 4.6816 36 1 4.3017 1.7976 5.8687 37 1 6.6503 1.5777 3.9325 38 1 6.7591 1.8378 5.6885 39 1 9.5866 1.2522 5.1436 40 1 7.0549 -0.2213 2.2541 41 1 5.6023 0.0301 1.2566 42 1 5.7902 0.9096 2.7926 43 1 5.2042 -3.3230 3.0761 44 1 5.9594 -2.6539 1.6095 45 1 6.8463 -2.6405 3.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087269587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:37 Heat of formation + Delta-G solvation = -76.348829 kcal Electronic energy + Delta-G solvation = -29116.797507 eV Core-core repulsion = 25000.056185 eV Total energy + Delta-G solvation = -4116.741321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -49.37441 -47.37311 -41.08426 -39.10737 -35.45972 -33.36801 -32.86288 -31.74197 -30.34627 -30.01407 -26.97319 -26.03366 -25.39814 -23.85081 -22.43620 -21.35986 -20.34773 -19.59124 -18.67789 -17.96112 -17.40555 -17.00528 -16.69743 -15.79165 -15.23815 -15.02121 -14.88928 -14.49575 -14.18460 -13.79532 -13.69705 -13.68978 -13.34085 -13.28136 -12.88431 -12.81184 -12.60256 -12.54257 -12.34932 -12.17474 -12.01423 -11.63806 -11.48527 -11.20697 -11.05468 -10.88976 -10.75682 -10.46774 -10.32106 -10.18043 -10.05148 -9.76169 -9.63572 -9.45158 -9.15076 -8.75254 -8.37492 -6.65605 -5.80544 -3.28048 2.09259 2.60868 3.35931 3.42046 3.43686 3.56032 3.81876 4.31990 4.34414 4.48049 4.89923 4.96823 5.14359 5.20464 5.28576 5.29652 5.46125 5.57797 5.59004 5.63138 5.79542 5.86537 5.91884 6.06326 6.12234 6.14891 6.24042 6.33766 6.37264 6.48871 6.54041 6.55579 6.69878 6.74188 6.78156 6.92936 6.97240 7.16503 7.34437 7.38904 7.71555 7.81724 7.85227 8.45669 9.24466 9.89480 10.29399 11.23452 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026641 B = 0.003902 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.757370 B = 7173.969188 C = 7400.353077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.278 3.722 3 F -0.189 7.189 4 F -0.184 7.184 5 C 0.482 3.518 6 O -0.512 6.512 7 N -0.686 5.686 8 C 0.119 3.881 9 H 0.112 0.888 10 C -0.130 4.130 11 H 0.074 0.926 12 C -0.104 4.104 13 C -0.146 4.146 14 C 0.182 3.818 15 N -0.565 5.565 16 C -0.269 4.269 17 H 0.064 0.936 18 C 0.012 3.988 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.191 3.809 25 H 0.079 0.921 26 C -0.111 4.111 27 C -0.140 4.140 28 C -0.126 4.126 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.407 0.593 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.066 0.934 39 H 0.254 0.746 40 H 0.068 0.932 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.684 0.452 -9.149 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.238 3.762 3 F -0.170 7.170 4 F -0.165 7.165 5 C 0.263 3.737 6 O -0.387 6.387 7 N -0.337 5.337 8 C 0.014 3.986 9 H 0.130 0.870 10 C -0.151 4.151 11 H 0.092 0.908 12 C -0.142 4.142 13 C -0.185 4.185 14 C 0.056 3.944 15 N -0.282 5.282 16 C -0.399 4.399 17 H 0.081 0.919 18 C -0.188 4.188 19 N -0.542 5.542 20 Si 0.729 3.271 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.080 3.920 25 H 0.097 0.903 26 C -0.115 4.115 27 C -0.196 4.196 28 C -0.184 4.184 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.245 0.755 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.964 0.003 -8.773 15.654 hybrid contribution 1.066 0.125 0.200 1.092 sum -11.898 0.128 -8.573 14.665 Atomic orbital electron populations 1.22614 0.89027 1.06667 1.05551 1.21463 0.95836 0.75710 0.83194 1.93065 1.90481 1.36801 1.96692 1.93080 1.90552 1.80813 1.52071 1.20700 0.83348 0.84123 0.85546 1.90753 1.55963 1.32799 1.59211 1.46161 1.15918 1.42026 1.29557 1.23090 0.95901 0.96378 0.83200 0.87044 1.23275 1.00083 0.95592 0.96178 0.90789 1.21505 0.98989 0.93671 0.99991 1.22117 0.99988 0.98294 0.98094 1.20320 0.90229 0.82922 1.00882 1.42800 1.29429 1.02063 1.53883 1.19206 0.90820 1.11202 1.18673 0.91851 1.25021 0.96423 0.99585 0.97744 1.70054 1.19580 1.31794 1.32764 0.86426 0.80069 0.77961 0.82603 1.20928 1.21713 1.21050 1.21059 0.87829 0.93223 0.89866 0.90341 1.23039 0.90711 0.96110 1.01654 1.22037 1.01270 0.99601 0.96711 1.21625 1.01545 0.95280 0.99936 0.88805 0.89320 0.88125 0.75450 0.90849 0.93729 0.93033 0.92759 0.94465 0.91613 0.93615 0.91339 0.95352 0.88715 0.93483 0.94077 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.92 37.16 0.33 -1.26 16 2 C 0.28 3.23 2.47 -27.88 -0.07 3.17 16 3 F -0.19 -2.23 16.51 2.25 0.04 -2.19 16 4 F -0.18 -2.29 17.05 2.25 0.04 -2.25 16 5 C 0.48 6.77 7.23 -10.98 -0.08 6.69 16 6 O -0.51 -8.31 15.70 5.56 0.09 -8.23 16 7 N -0.69 -9.70 4.28 -52.79 -0.23 -9.93 16 8 C 0.12 1.85 3.62 -66.89 -0.24 1.61 16 9 H 0.11 1.79 7.29 -51.93 -0.38 1.41 16 10 C -0.13 -2.18 4.29 -89.88 -0.39 -2.57 16 11 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 12 C -0.10 -1.69 4.66 -26.69 -0.12 -1.81 16 13 C -0.15 -2.64 6.02 -26.75 -0.16 -2.80 16 14 C 0.18 4.02 3.93 -5.35 -0.02 4.00 16 15 N -0.56 -12.83 2.60 -168.24 -0.44 -13.27 16 16 C -0.27 -6.90 9.39 -15.06 -0.14 -7.04 16 17 H 0.06 1.62 7.87 -52.49 -0.41 1.21 16 18 C 0.01 0.31 4.77 -17.43 -0.08 0.22 16 19 N -0.90 -24.33 11.12 55.49 0.62 -23.72 16 20 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.19 3.69 3.57 -68.39 -0.24 3.45 16 25 H 0.08 1.54 7.97 -51.93 -0.41 1.12 16 26 C -0.11 -1.91 1.35 -153.85 -0.21 -2.12 16 27 C -0.14 -2.47 6.85 37.16 0.25 -2.21 16 28 C -0.13 -2.10 9.16 37.16 0.34 -1.76 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.89 7.87 -51.93 -0.41 0.48 16 32 H 0.41 5.46 5.21 -40.82 -0.21 5.25 16 33 H 0.07 1.17 3.65 -51.93 -0.19 0.98 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.88 5.55 -51.93 -0.29 0.59 16 38 H 0.07 1.65 6.61 -51.93 -0.34 1.31 16 39 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 41 H 0.03 0.42 6.53 -51.93 -0.34 0.08 16 42 H 0.09 1.75 1.98 -51.93 -0.10 1.65 16 43 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -27.38 344.39 -7.00 -34.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.44 Total: 6.55 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.83 Total: -2.44 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.05 Total: -46.91 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.38 -7.00 -34.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087269587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.974 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds