Wall clock time and date at job start Tue Mar 31 2020 11:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39901 * 109.47301 * 2 1 4 4 F 1.39901 * 109.46836 * 239.99599 * 2 1 3 5 5 C 1.50702 * 109.47204 * 120.00540 * 2 1 3 6 6 O 1.21288 * 119.99672 * 334.98978 * 5 2 1 7 7 N 1.34770 * 120.00326 * 154.99911 * 5 2 1 8 8 C 1.46505 * 120.00051 * 179.97438 * 7 5 2 9 9 H 1.08997 * 112.86894 * 23.72951 * 8 7 5 10 10 C 1.54149 * 113.71492 * 252.38611 * 8 7 5 11 11 H 1.08994 * 114.25006 * 26.66496 * 10 8 7 12 12 C 1.53063 * 111.69081 * 157.45232 * 10 8 7 13 13 C 1.53018 * 109.41508 * 146.39942 * 12 10 8 14 14 C 1.53292 * 108.81463 * 295.21326 * 13 12 10 15 15 N 1.45896 * 109.69380 * 57.63812 * 14 13 12 16 16 C 1.36938 * 118.48023 * 140.54827 * 15 14 13 17 17 H 1.08007 * 119.99387 * 204.17020 * 16 15 14 18 18 C 1.38807 * 120.00381 * 24.17000 * 16 15 14 19 19 N 1.31621 * 120.00058 * 34.01425 * 18 16 15 20 20 Si 1.86804 * 119.99996 * 214.01939 * 18 16 15 21 21 H 1.48502 * 109.47108 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.46821 * 299.99923 * 20 18 16 23 23 H 1.48500 * 109.47117 * 59.99800 * 20 18 16 24 24 C 1.45093 * 123.03188 * 320.26843 * 15 14 13 25 25 H 1.09007 * 112.25001 * 156.06029 * 24 15 14 26 26 C 1.53379 * 114.62884 * 286.50752 * 24 15 14 27 27 C 1.52997 * 113.68934 * 257.75288 * 26 24 15 28 28 C 1.53004 * 113.68647 * 28.79226 * 26 24 15 29 29 H 1.09009 * 109.46850 * 300.00298 * 1 2 3 30 30 H 1.08996 * 109.47404 * 59.99590 * 1 2 3 31 31 H 1.08995 * 109.47475 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00253 * 359.97438 * 7 5 2 33 33 H 1.09003 * 109.47925 * 266.38318 * 12 10 8 34 34 H 1.09004 * 109.47915 * 26.41540 * 12 10 8 35 35 H 1.09011 * 109.56015 * 55.18377 * 13 12 10 36 36 H 1.09001 * 109.56262 * 175.51456 * 13 12 10 37 37 H 1.09000 * 109.59565 * 297.51554 * 14 13 12 38 38 H 1.08994 * 109.40792 * 177.64796 * 14 13 12 39 39 H 0.97000 * 119.99732 * 5.76934 * 19 18 16 40 40 H 1.09008 * 109.47074 * 60.00185 * 27 26 24 41 41 H 1.08998 * 109.47794 * 179.97438 * 27 26 24 42 42 H 1.09000 * 109.47614 * 300.00492 * 27 26 24 43 43 H 1.08995 * 109.46995 * 27.27717 * 28 26 24 44 44 H 1.08996 * 109.47071 * 147.27844 * 28 26 24 45 45 H 1.09000 * 109.46383 * 267.27511 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9962 -0.6596 -1.1423 5 6 2.0323 -0.7105 1.2304 6 8 1.3370 -0.7705 2.2224 7 7 3.2542 -1.2791 1.2286 8 6 3.7428 -1.9693 2.4250 9 1 2.9374 -2.3168 3.0721 10 6 4.8505 -1.2026 3.1742 11 1 4.8196 -0.1220 3.0350 12 6 4.9424 -1.6312 4.6407 13 6 6.4004 -1.5629 5.1001 14 6 7.2161 -2.5933 4.3110 15 7 7.0902 -2.3297 2.8816 16 6 8.1984 -2.4757 2.0905 17 1 8.2678 -1.9412 1.1545 18 6 9.2323 -3.3105 2.4915 19 7 8.9675 -4.4070 3.1696 20 14 10.9997 -2.8775 2.0688 21 1 11.9075 -3.9221 2.6073 22 1 11.1514 -2.8017 0.5936 23 1 11.3450 -1.5644 2.6701 24 6 5.8436 -1.9257 2.2586 25 1 6.0045 -1.3860 1.3253 26 6 4.8026 -3.0444 2.1274 27 6 4.7045 -3.6305 0.7176 28 6 4.9138 -4.1178 3.2121 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.8103 -1.2313 0.4352 33 1 4.3366 -0.9633 5.2533 34 1 4.5759 -2.6525 4.7446 35 1 6.7944 -0.5632 4.9169 36 1 6.4587 -1.7905 6.1645 37 1 6.8471 -3.5957 4.5281 38 1 8.2645 -2.5241 4.6009 39 1 8.0472 -4.6757 3.3170 40 1 5.6691 -4.0493 0.4303 41 1 3.9489 -4.4159 0.7022 42 1 4.4263 -2.8444 0.0157 43 1 5.3494 -3.6820 4.1112 44 1 3.9218 -4.5071 3.4410 45 1 5.5494 -4.9289 2.8567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087269588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:45 Heat of formation + Delta-G solvation = -79.751080 kcal Electronic energy + Delta-G solvation = -28977.785967 eV Core-core repulsion = 24860.897113 eV Total energy + Delta-G solvation = -4116.888854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -49.43385 -47.43188 -41.14309 -39.23707 -35.70951 -33.55259 -32.82944 -31.80731 -30.30630 -30.05989 -27.06545 -26.15035 -25.13321 -23.80433 -22.63069 -21.28231 -20.82679 -19.58092 -18.78236 -18.03350 -17.63216 -17.44193 -16.80396 -15.92341 -15.43164 -14.98092 -14.73590 -14.37375 -14.23477 -13.98706 -13.74862 -13.60307 -13.55417 -13.35529 -13.06727 -12.91176 -12.78291 -12.71286 -12.31843 -12.23842 -12.08987 -11.87692 -11.59616 -11.54599 -11.26487 -10.80213 -10.70723 -10.36575 -10.23966 -10.11942 -9.94100 -9.87330 -9.81425 -9.57674 -9.16503 -8.86577 -8.23333 -6.89692 -6.14453 -3.20239 1.99063 2.47582 3.48397 3.48534 3.53519 3.70421 3.72945 4.24224 4.26700 4.58325 4.76252 4.87650 5.08712 5.14335 5.17639 5.23806 5.26359 5.50300 5.53342 5.54578 5.64924 5.75166 5.77612 5.94481 5.96613 6.05288 6.12893 6.21154 6.26859 6.33270 6.39917 6.41834 6.47222 6.59807 6.64672 6.75334 6.85558 6.95674 7.04748 7.19555 7.26261 7.75142 8.04053 8.56021 9.13352 9.84780 10.20811 11.13802 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.004117 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.171083 B = 6799.682168 C = 7255.900183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.280 3.720 3 F -0.182 7.182 4 F -0.189 7.189 5 C 0.485 3.515 6 O -0.508 6.508 7 N -0.683 5.683 8 C 0.119 3.881 9 H 0.100 0.900 10 C -0.129 4.129 11 H 0.072 0.928 12 C -0.107 4.107 13 C -0.136 4.136 14 C 0.155 3.845 15 N -0.571 5.571 16 C -0.370 4.370 17 H 0.056 0.944 18 C -0.012 4.012 19 N -0.900 5.900 20 Si 1.050 2.950 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.190 3.810 25 H 0.071 0.929 26 C -0.114 4.114 27 C -0.127 4.127 28 C -0.136 4.136 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.408 0.592 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.270 0.730 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 5.915 -3.558 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.240 3.760 3 F -0.163 7.163 4 F -0.170 7.170 5 C 0.266 3.734 6 O -0.383 6.383 7 N -0.334 5.334 8 C 0.014 3.986 9 H 0.118 0.882 10 C -0.150 4.150 11 H 0.091 0.909 12 C -0.145 4.145 13 C -0.175 4.175 14 C 0.030 3.970 15 N -0.290 5.290 16 C -0.499 4.499 17 H 0.073 0.927 18 C -0.216 4.216 19 N -0.538 5.538 20 Si 0.880 3.120 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.221 1.221 24 C 0.079 3.921 25 H 0.089 0.911 26 C -0.118 4.118 27 C -0.185 4.185 28 C -0.193 4.193 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.057 0.943 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.424 5.413 -2.646 14.715 hybrid contribution -1.251 0.660 -1.014 1.740 sum -14.676 6.073 -3.660 16.299 Atomic orbital electron populations 1.22621 0.88892 1.06306 1.06059 1.21413 0.95854 0.76275 0.82442 1.93093 1.90534 1.36113 1.96574 1.93068 1.90485 1.80651 1.52813 1.20685 0.82962 0.80733 0.89038 1.90765 1.56184 1.58273 1.33044 1.45822 1.16194 1.53849 1.17498 1.22473 0.95833 0.94402 0.85859 0.88183 1.23253 0.96539 0.99167 0.96089 0.90950 1.21560 0.97459 1.01839 0.93644 1.21969 0.95350 1.01264 0.98924 1.20885 0.98737 0.94454 0.82969 1.43283 1.05219 1.78188 1.02262 1.19911 0.97158 1.26303 1.06494 0.92656 1.25613 1.03786 0.92440 0.99740 1.70808 1.22903 1.18020 1.42084 0.83757 0.76837 0.75729 0.75721 1.21244 1.22055 1.22149 1.21255 0.84686 0.91985 0.94139 0.91139 1.23019 0.96769 0.96026 0.95970 1.21591 1.01917 0.99615 0.95352 1.22029 1.00077 0.97840 0.99325 0.88057 0.89197 0.88805 0.75435 0.93030 0.90270 0.92271 0.92492 0.95387 0.91654 0.91905 0.91488 0.93663 0.93869 0.89049 0.94254 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.92 37.16 0.33 -1.20 16 2 C 0.28 3.19 2.47 -27.88 -0.07 3.12 16 3 F -0.18 -2.26 17.05 2.25 0.04 -2.22 16 4 F -0.19 -2.17 16.51 2.25 0.04 -2.13 16 5 C 0.49 6.70 7.23 -10.99 -0.08 6.63 16 6 O -0.51 -8.15 15.70 5.55 0.09 -8.06 16 7 N -0.68 -9.58 4.61 -52.79 -0.24 -9.82 16 8 C 0.12 1.86 3.34 -66.88 -0.22 1.64 16 9 H 0.10 1.62 7.35 -51.93 -0.38 1.24 16 10 C -0.13 -2.19 4.12 -89.88 -0.37 -2.56 16 11 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.11 -1.75 5.18 -26.69 -0.14 -1.89 16 13 C -0.14 -2.43 6.05 -26.57 -0.16 -2.59 16 14 C 0.15 3.37 4.01 -4.22 -0.02 3.36 16 15 N -0.57 -13.07 2.55 -166.65 -0.43 -13.49 16 16 C -0.37 -9.70 9.28 -15.06 -0.14 -9.84 16 17 H 0.06 1.49 7.97 -52.48 -0.42 1.07 16 18 C -0.01 -0.32 4.33 -17.43 -0.08 -0.39 16 19 N -0.90 -25.42 12.66 55.49 0.70 -24.72 16 20 Si 1.05 24.40 30.03 -169.99 -5.10 19.30 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.19 3.67 3.35 -68.39 -0.23 3.44 16 25 H 0.07 1.40 7.86 -51.93 -0.41 1.00 16 26 C -0.11 -1.93 1.34 -153.86 -0.21 -2.14 16 27 C -0.13 -2.05 8.98 37.16 0.33 -1.71 16 28 C -0.14 -2.38 7.33 37.16 0.27 -2.11 16 29 H 0.10 0.86 7.87 -51.92 -0.41 0.45 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.41 5.35 6.36 -40.82 -0.26 5.09 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.27 4.67 -51.93 -0.24 1.03 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.64 5.01 -51.93 -0.26 0.38 16 38 H 0.07 1.62 6.85 -51.93 -0.36 1.26 16 39 H 0.27 7.62 6.97 -40.82 -0.28 7.33 16 40 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.04 0.61 5.91 -51.93 -0.31 0.31 16 43 H 0.09 1.66 1.96 -51.93 -0.10 1.56 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -28.69 346.46 -6.91 -35.60 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.45 Total: 6.59 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.77 Total: -6.27 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.03 Total: -48.03 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.08 Total: -4.35 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.10 Total: 19.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.69 -6.91 -35.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087269588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.151 kcal (2) G-P(sol) polarization free energy of solvation -28.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds