Wall clock time and date at job start Tue Mar 31 2020 11:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39899 * 109.46901 * 2 1 4 4 F 1.39896 * 109.47406 * 239.99463 * 2 1 3 5 5 C 1.50698 * 109.46904 * 119.99528 * 2 1 3 6 6 O 1.21287 * 120.00051 * 335.00416 * 5 2 1 7 7 N 1.34776 * 120.00123 * 155.00209 * 5 2 1 8 8 C 1.46502 * 120.00263 * 179.97438 * 7 5 2 9 9 H 1.09003 * 113.34013 * 28.42604 * 8 7 5 10 10 C 1.50004 * 114.12841 * 255.49609 * 8 7 5 11 11 H 1.08998 * 112.51484 * 170.14893 * 10 8 7 12 12 C 1.51214 * 126.15603 * 27.75457 * 10 8 7 13 13 C 1.54093 * 106.19406 * 198.59100 * 12 10 8 14 14 C 1.52498 * 112.67445 * 55.44151 * 13 12 10 15 15 N 1.48407 * 111.86740 * 313.20991 * 14 13 12 16 16 C 1.36939 * 123.16933 * 231.82093 * 15 14 13 17 17 H 1.08000 * 119.99873 * 150.32728 * 16 15 14 18 18 C 1.38813 * 119.99672 * 330.32702 * 16 15 14 19 19 N 1.31615 * 120.00407 * 347.90271 * 18 16 15 20 20 Si 1.86803 * 119.99536 * 167.90075 * 18 16 15 21 21 H 1.48504 * 109.46908 * 89.99933 * 20 18 16 22 22 H 1.48495 * 109.46993 * 209.99851 * 20 18 16 23 23 H 1.48502 * 109.47231 * 330.00240 * 20 18 16 24 24 C 1.45375 * 113.66379 * 51.83738 * 15 14 13 25 25 H 1.09007 * 111.69629 * 59.52955 * 24 15 14 26 26 C 1.49957 * 126.68432 * 204.02714 * 24 15 14 27 27 C 1.52997 * 114.08643 * 25.70135 * 26 24 15 28 28 C 1.52999 * 114.08571 * 253.27583 * 26 24 15 29 29 H 1.08994 * 109.47537 * 300.00732 * 1 2 3 30 30 H 1.08999 * 109.46847 * 60.01027 * 1 2 3 31 31 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99941 * 359.97438 * 7 5 2 33 33 H 1.08999 * 110.10473 * 317.75985 * 12 10 8 34 34 H 1.08997 * 110.09893 * 79.42686 * 12 10 8 35 35 H 1.08995 * 108.84341 * 294.61406 * 13 12 10 36 36 H 1.09002 * 108.75470 * 176.20679 * 13 12 10 37 37 H 1.08999 * 109.00068 * 192.59435 * 14 13 12 38 38 H 1.09004 * 109.00527 * 73.82904 * 14 13 12 39 39 H 0.96994 * 120.00073 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47505 * 147.33109 * 27 26 24 41 41 H 1.08995 * 109.47170 * 267.33030 * 27 26 24 42 42 H 1.09000 * 109.46812 * 27.33006 * 27 26 24 43 43 H 1.08995 * 109.47619 * 306.07963 * 28 26 24 44 44 H 1.09003 * 109.47164 * 66.07713 * 28 26 24 45 45 H 1.09001 * 109.47809 * 186.07481 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3369 -0.7704 2.2224 7 7 3.2543 -1.2789 1.2289 8 6 3.7428 -1.9689 2.4253 9 1 2.9450 -2.3905 3.0367 10 6 4.7684 -1.1977 3.2022 11 1 4.9871 -1.6508 4.1691 12 6 4.9008 0.3077 3.2555 13 6 6.3270 0.5959 3.7628 14 6 7.4004 -0.0736 2.9113 15 7 7.0772 -1.4948 2.6315 16 6 7.9522 -2.5221 2.8648 17 1 7.5780 -3.5045 3.1121 18 6 9.3201 -2.3005 2.7835 19 7 9.7759 -1.1842 2.2560 20 14 10.5142 -3.5870 3.4229 21 1 10.8536 -4.5338 2.3302 22 1 11.7513 -2.9196 3.9017 23 1 9.8868 -4.3305 4.5449 24 6 5.7445 -1.6937 2.0861 25 1 5.6086 -1.1558 1.1477 26 6 4.9250 -2.9475 2.1579 27 6 5.2684 -3.8508 3.3441 28 6 4.8222 -3.7031 0.8314 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.8103 -1.2312 0.4355 33 1 4.7644 0.7313 2.2605 34 1 4.1666 0.7241 3.9451 35 1 6.4155 0.2360 4.7878 36 1 6.4913 1.6735 3.7532 37 1 8.3535 -0.0234 3.4377 38 1 7.4898 0.4627 1.9665 39 1 10.7317 -1.0296 2.1988 40 1 4.3686 -4.3653 3.6814 41 1 6.0135 -4.5849 3.0380 42 1 5.6675 -3.2455 4.1580 43 1 4.4608 -3.0280 0.0557 44 1 5.8049 -4.0836 0.5529 45 1 4.1276 -4.5360 0.9405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087269589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:51 Heat of formation + Delta-G solvation = -66.388557 kcal Electronic energy + Delta-G solvation = -29062.426406 eV Core-core repulsion = 24946.116995 eV Total energy + Delta-G solvation = -4116.309412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -49.36009 -47.35809 -41.29815 -39.06626 -35.37875 -33.52872 -32.92743 -31.74666 -30.22983 -29.41117 -27.25986 -26.10988 -25.41609 -23.99397 -22.44291 -21.03766 -20.56698 -19.31013 -18.74148 -18.20662 -17.86598 -16.84090 -16.57851 -15.66533 -15.02764 -14.98475 -14.62116 -14.20160 -14.09664 -13.87982 -13.79552 -13.67525 -13.64464 -13.32243 -12.86453 -12.85610 -12.66781 -12.59460 -12.44910 -12.17319 -12.10463 -11.81837 -11.39471 -11.19997 -11.09180 -10.89832 -10.71226 -10.50588 -10.27449 -10.11788 -10.05333 -9.97001 -9.89944 -9.37780 -8.93552 -8.86537 -8.42904 -6.55604 -5.77912 -3.24151 2.07791 2.53997 3.34969 3.42697 3.43231 3.55209 3.79738 4.30803 4.33485 4.46521 4.59298 4.90835 5.09202 5.14103 5.21974 5.29191 5.42224 5.51935 5.58333 5.72633 5.76743 5.83869 5.87324 5.97964 6.00393 6.21501 6.23062 6.30405 6.33417 6.38104 6.50684 6.56155 6.58951 6.69823 6.75092 6.82533 6.96706 7.07263 7.26938 7.37767 7.64148 7.81165 7.82728 8.41232 9.16435 9.81686 10.49056 11.30162 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.004247 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.227600 B = 6590.908982 C = 6936.272489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.280 3.720 3 F -0.181 7.181 4 F -0.190 7.190 5 C 0.487 3.513 6 O -0.507 6.507 7 N -0.680 5.680 8 C 0.136 3.864 9 H 0.099 0.901 10 C -0.172 4.172 11 H 0.103 0.897 12 C -0.085 4.085 13 C -0.136 4.136 14 C 0.169 3.831 15 N -0.570 5.570 16 C -0.247 4.247 17 H 0.075 0.925 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.151 3.849 25 H 0.043 0.957 26 C -0.064 4.064 27 C -0.116 4.116 28 C -0.135 4.135 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.408 0.592 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.015 0.985 39 H 0.253 0.747 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 0.441 -3.421 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.240 3.760 3 F -0.162 7.162 4 F -0.171 7.171 5 C 0.268 3.732 6 O -0.382 6.382 7 N -0.331 5.331 8 C 0.031 3.969 9 H 0.117 0.883 10 C -0.193 4.193 11 H 0.121 0.879 12 C -0.123 4.123 13 C -0.175 4.175 14 C 0.044 3.956 15 N -0.291 5.291 16 C -0.376 4.376 17 H 0.092 0.908 18 C -0.195 4.195 19 N -0.549 5.549 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.042 3.958 25 H 0.060 0.940 26 C -0.065 4.065 27 C -0.174 4.174 28 C -0.192 4.192 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.968 0.437 -2.739 16.207 hybrid contribution 1.250 -0.324 -0.377 1.345 sum -14.718 0.114 -3.116 15.044 Atomic orbital electron populations 1.22618 0.88963 1.06238 1.06034 1.21415 0.95783 0.76365 0.82450 1.93099 1.90521 1.36044 1.96561 1.93062 1.90492 1.80667 1.52868 1.20631 0.82841 0.80770 0.89001 1.90761 1.56222 1.58235 1.32981 1.45763 1.16138 1.53893 1.17321 1.21680 0.95298 0.94375 0.85578 0.88317 1.23340 0.98392 0.96508 1.01100 0.87898 1.21030 0.96637 0.94817 0.99818 1.22100 0.95610 0.99133 1.00645 1.20774 0.95886 0.82932 0.95967 1.43869 1.11754 1.03010 1.70477 1.19253 0.86318 0.91303 1.40716 0.90763 1.25174 0.97668 0.97295 0.99374 1.69970 1.12730 1.25643 1.46521 0.86360 0.80952 0.81112 0.78725 1.21461 1.21694 1.20444 1.21724 0.87342 0.93430 0.93258 0.93999 1.21877 0.93745 0.94376 0.96546 1.21639 1.00153 0.98858 0.96719 1.21691 1.02143 0.99549 0.95837 0.88068 0.89252 0.88844 0.75418 0.93227 0.93874 0.93114 0.93324 0.89652 0.96677 0.93717 0.93726 0.91540 0.90603 0.93400 0.91506 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.92 37.16 0.33 -1.23 16 2 C 0.28 3.28 2.47 -27.88 -0.07 3.21 16 3 F -0.18 -2.37 17.05 2.25 0.04 -2.33 16 4 F -0.19 -2.22 16.51 2.25 0.04 -2.18 16 5 C 0.49 6.80 7.23 -10.99 -0.08 6.72 16 6 O -0.51 -8.16 15.77 5.55 0.09 -8.08 16 7 N -0.68 -9.62 4.26 -57.66 -0.25 -9.86 16 8 C 0.14 2.08 3.90 -71.83 -0.28 1.80 16 9 H 0.10 1.52 7.61 -51.93 -0.40 1.13 16 10 C -0.17 -3.00 2.96 -95.83 -0.28 -3.28 16 11 H 0.10 1.90 6.07 -51.93 -0.32 1.58 16 12 C -0.09 -1.51 5.94 -27.06 -0.16 -1.67 16 13 C -0.14 -2.59 5.90 -26.42 -0.16 -2.75 16 14 C 0.17 3.93 5.28 -3.25 -0.02 3.91 16 15 N -0.57 -13.33 2.87 -169.42 -0.49 -13.82 16 16 C -0.25 -6.30 9.10 -15.06 -0.14 -6.43 16 17 H 0.07 1.82 5.18 -52.49 -0.27 1.55 16 18 C 0.00 0.09 5.12 -17.43 -0.09 0.01 16 19 N -0.90 -25.57 11.20 55.49 0.62 -24.95 16 20 Si 0.90 21.08 29.57 -169.99 -5.03 16.06 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.15 2.91 2.89 -72.14 -0.21 2.71 16 25 H 0.04 0.85 6.60 -51.93 -0.34 0.51 16 26 C -0.06 -1.04 1.39 -159.16 -0.22 -1.26 16 27 C -0.12 -1.86 7.31 37.16 0.27 -1.59 16 28 C -0.13 -1.96 9.12 37.16 0.34 -1.62 16 29 H 0.10 0.88 7.87 -51.93 -0.41 0.48 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 5.55 5.74 -40.82 -0.23 5.31 16 33 H 0.05 0.89 7.97 -51.93 -0.41 0.47 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 2.22 6.31 -51.93 -0.33 1.90 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.11 7.04 -51.93 -0.37 0.74 16 42 H 0.08 1.35 5.76 -51.93 -0.30 1.05 16 43 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -28.76 350.22 -7.10 -35.86 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.65 Total: 5.51 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.76 Total: -1.48 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.11 Total: -48.63 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.76 -7.10 -35.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087269589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.526 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds