Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39899 * 109.46901 * 2 1 4 4 F 1.39896 * 109.47406 * 239.99463 * 2 1 3 5 5 C 1.50698 * 109.46904 * 119.99528 * 2 1 3 6 6 O 1.21287 * 120.00051 * 335.00416 * 5 2 1 7 7 N 1.34776 * 120.00123 * 155.00209 * 5 2 1 8 8 C 1.46502 * 120.00263 * 179.97438 * 7 5 2 9 9 H 1.09003 * 113.34013 * 28.42604 * 8 7 5 10 10 C 1.50004 * 114.12841 * 255.49609 * 8 7 5 11 11 H 1.08998 * 112.51484 * 170.14893 * 10 8 7 12 12 C 1.51214 * 126.15603 * 27.75457 * 10 8 7 13 13 C 1.54093 * 106.19406 * 198.59100 * 12 10 8 14 14 C 1.52498 * 112.67445 * 55.44151 * 13 12 10 15 15 N 1.48407 * 111.86740 * 313.20991 * 14 13 12 16 16 C 1.36939 * 123.16933 * 231.82093 * 15 14 13 17 17 H 1.08000 * 119.99873 * 150.32728 * 16 15 14 18 18 C 1.38813 * 119.99672 * 330.32702 * 16 15 14 19 19 N 1.31615 * 120.00407 * 347.90271 * 18 16 15 20 20 Si 1.86803 * 119.99536 * 167.90075 * 18 16 15 21 21 H 1.48504 * 109.46908 * 89.99933 * 20 18 16 22 22 H 1.48495 * 109.46993 * 209.99851 * 20 18 16 23 23 H 1.48502 * 109.47231 * 330.00240 * 20 18 16 24 24 C 1.45375 * 113.66379 * 51.83738 * 15 14 13 25 25 H 1.09007 * 111.69629 * 59.52955 * 24 15 14 26 26 C 1.49957 * 126.68432 * 204.02714 * 24 15 14 27 27 C 1.52997 * 114.08643 * 25.70135 * 26 24 15 28 28 C 1.52999 * 114.08571 * 253.27583 * 26 24 15 29 29 H 1.08994 * 109.47537 * 300.00732 * 1 2 3 30 30 H 1.08999 * 109.46847 * 60.01027 * 1 2 3 31 31 H 1.09001 * 109.47086 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99941 * 359.97438 * 7 5 2 33 33 H 1.08999 * 110.10473 * 317.75985 * 12 10 8 34 34 H 1.08997 * 110.09893 * 79.42686 * 12 10 8 35 35 H 1.08995 * 108.84341 * 294.61406 * 13 12 10 36 36 H 1.09002 * 108.75470 * 176.20679 * 13 12 10 37 37 H 1.08999 * 109.00068 * 192.59435 * 14 13 12 38 38 H 1.09004 * 109.00527 * 73.82904 * 14 13 12 39 39 H 0.96994 * 120.00073 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47505 * 147.33109 * 27 26 24 41 41 H 1.08995 * 109.47170 * 267.33030 * 27 26 24 42 42 H 1.09000 * 109.46812 * 27.33006 * 27 26 24 43 43 H 1.08995 * 109.47619 * 306.07963 * 28 26 24 44 44 H 1.09003 * 109.47164 * 66.07713 * 28 26 24 45 45 H 1.09001 * 109.47809 * 186.07481 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3369 -0.7704 2.2224 7 7 3.2543 -1.2789 1.2289 8 6 3.7428 -1.9689 2.4253 9 1 2.9450 -2.3905 3.0367 10 6 4.7684 -1.1977 3.2022 11 1 4.9871 -1.6508 4.1691 12 6 4.9008 0.3077 3.2555 13 6 6.3270 0.5959 3.7628 14 6 7.4004 -0.0736 2.9113 15 7 7.0772 -1.4948 2.6315 16 6 7.9522 -2.5221 2.8648 17 1 7.5780 -3.5045 3.1121 18 6 9.3201 -2.3005 2.7835 19 7 9.7759 -1.1842 2.2560 20 14 10.5142 -3.5870 3.4229 21 1 10.8536 -4.5338 2.3302 22 1 11.7513 -2.9196 3.9017 23 1 9.8868 -4.3305 4.5449 24 6 5.7445 -1.6937 2.0861 25 1 5.6086 -1.1558 1.1477 26 6 4.9250 -2.9475 2.1579 27 6 5.2684 -3.8508 3.3441 28 6 4.8222 -3.7031 0.8314 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.8103 -1.2312 0.4355 33 1 4.7644 0.7313 2.2605 34 1 4.1666 0.7241 3.9451 35 1 6.4155 0.2360 4.7878 36 1 6.4913 1.6735 3.7532 37 1 8.3535 -0.0234 3.4377 38 1 7.4898 0.4627 1.9665 39 1 10.7317 -1.0296 2.1988 40 1 4.3686 -4.3653 3.6814 41 1 6.0135 -4.5849 3.0380 42 1 5.6675 -3.2455 4.1580 43 1 4.4608 -3.0280 0.0557 44 1 5.8049 -4.0836 0.5529 45 1 4.1276 -4.5360 0.9405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087269589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = -82.330713 kcal Electronic energy + Delta-G solvation = -29063.117710 eV Core-core repulsion = 24946.116995 eV Total energy + Delta-G solvation = -4117.000715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -50.30204 -48.30623 -42.67270 -40.27241 -37.00705 -34.86248 -34.59767 -32.58762 -32.03752 -30.82500 -28.55413 -27.60512 -26.92731 -25.28282 -24.00886 -22.34601 -21.96913 -20.75153 -20.01075 -19.43114 -18.88585 -18.49231 -17.66237 -16.91754 -16.61560 -16.24727 -16.02262 -15.66630 -15.48110 -15.28561 -15.16677 -14.86934 -14.62179 -14.58108 -14.26626 -14.17449 -13.99551 -13.63005 -13.51436 -13.37536 -13.20013 -13.06109 -12.92459 -12.81087 -12.74462 -12.47801 -12.32784 -12.08656 -11.96615 -11.70712 -11.66701 -11.43916 -11.16190 -10.98611 -10.60141 -10.27564 -10.15876 -8.47354 -7.78223 -5.26704 0.97491 1.46854 1.48136 1.49347 1.56883 2.53969 2.60810 2.89745 3.21359 3.36739 3.38058 3.41764 3.47383 3.67004 3.88947 4.10555 4.21592 4.33320 4.45718 4.48717 4.54081 4.59325 4.60443 4.67617 4.73194 4.84670 4.94737 4.96342 5.01125 5.06157 5.09233 5.13140 5.17828 5.26832 5.32641 5.40831 5.50759 5.52409 5.67841 5.75142 5.80409 6.11363 6.44452 6.70241 7.17219 7.88926 8.54925 9.27481 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.004247 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.227600 B = 6590.908982 C = 6936.272489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.281 3.719 3 F -0.190 7.190 4 F -0.189 7.189 5 C 0.487 3.513 6 O -0.526 6.526 7 N -0.681 5.681 8 C 0.153 3.847 9 H 0.109 0.891 10 C -0.162 4.162 11 H 0.096 0.904 12 C -0.079 4.079 13 C -0.125 4.125 14 C 0.177 3.823 15 N -0.585 5.585 16 C -0.240 4.240 17 H 0.085 0.915 18 C -0.055 4.055 19 N -0.941 5.941 20 Si 0.957 3.043 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.267 1.267 24 C 0.134 3.866 25 H 0.035 0.965 26 C -0.060 4.060 27 C -0.114 4.114 28 C -0.131 4.131 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.050 0.950 38 H -0.011 1.011 39 H 0.245 0.755 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 -0.527 -3.432 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.242 3.758 3 F -0.171 7.171 4 F -0.170 7.170 5 C 0.269 3.731 6 O -0.402 6.402 7 N -0.332 5.332 8 C 0.048 3.952 9 H 0.127 0.873 10 C -0.183 4.183 11 H 0.114 0.886 12 C -0.117 4.117 13 C -0.164 4.164 14 C 0.052 3.948 15 N -0.306 5.306 16 C -0.370 4.370 17 H 0.103 0.897 18 C -0.250 4.250 19 N -0.588 5.588 20 Si 0.786 3.214 21 H -0.214 1.214 22 H -0.227 1.227 23 H -0.192 1.192 24 C 0.026 3.974 25 H 0.053 0.947 26 C -0.061 4.061 27 C -0.171 4.171 28 C -0.188 4.188 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.249 0.751 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.007 0.993 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.615 -0.543 -2.755 18.826 hybrid contribution 2.016 -0.001 -0.390 2.054 sum -16.599 -0.543 -3.145 16.903 Atomic orbital electron populations 1.22690 0.86236 1.07389 1.07140 1.21544 0.97422 0.75520 0.81340 1.93087 1.90840 1.36658 1.96534 1.93068 1.90697 1.80621 1.52639 1.21023 0.82290 0.80243 0.89527 1.90753 1.56663 1.58884 1.33927 1.45759 1.16455 1.53951 1.16992 1.21444 0.94841 0.93229 0.85703 0.87300 1.23282 0.98499 0.96273 1.00247 0.88560 1.20959 0.95632 0.95151 0.99928 1.21931 0.95376 0.99563 0.99549 1.20570 0.95950 0.83436 0.94859 1.44054 1.12873 1.02530 1.71192 1.19660 0.86691 0.92069 1.38543 0.89726 1.25869 0.99384 0.99064 1.00658 1.70140 1.12211 1.27601 1.48854 0.85423 0.78679 0.78958 0.78330 1.21446 1.22737 1.19177 1.21990 0.85486 0.96352 0.93559 0.94747 1.21897 0.92854 0.93717 0.97661 1.21582 1.01266 0.98389 0.95847 1.21657 1.01835 1.00338 0.94993 0.88117 0.87034 0.87693 0.75105 0.93474 0.92316 0.93118 0.91801 0.93117 0.99324 0.94627 0.90629 0.92431 0.92653 0.92475 0.93292 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.92 71.98 0.64 -1.90 16 2 C 0.28 5.93 2.47 29.85 0.07 6.00 16 3 F -0.19 -4.61 17.05 44.97 0.77 -3.84 16 4 F -0.19 -3.98 16.51 44.97 0.74 -3.24 16 5 C 0.49 12.45 7.23 87.66 0.63 13.09 16 6 O -0.53 -15.59 15.77 -3.05 -0.05 -15.64 16 7 N -0.68 -17.79 4.26 -454.71 -1.94 -19.72 16 8 C 0.15 4.35 3.90 42.46 0.17 4.51 16 9 H 0.11 2.99 7.61 -2.39 -0.02 2.97 16 10 C -0.16 -5.42 2.96 -14.17 -0.04 -5.46 16 11 H 0.10 3.41 6.07 -2.39 -0.01 3.40 16 12 C -0.08 -2.69 5.94 30.38 0.18 -2.51 16 13 C -0.13 -4.77 5.90 30.80 0.18 -4.58 16 14 C 0.18 8.49 5.28 85.85 0.45 8.95 16 15 N -0.58 -27.81 2.87 -689.94 -1.98 -29.79 16 16 C -0.24 -12.38 9.10 84.03 0.76 -11.62 16 17 H 0.09 4.12 5.18 -2.91 -0.02 4.11 16 18 C -0.06 -3.01 5.12 84.86 0.43 -2.58 16 19 N -0.94 -55.36 11.20 21.65 0.24 -55.12 16 20 Si 0.96 44.17 29.57 68.60 2.03 46.20 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 C 0.13 5.09 2.89 42.86 0.12 5.21 16 25 H 0.04 1.39 6.60 -2.38 -0.02 1.38 16 26 C -0.06 -1.84 1.39 -55.19 -0.08 -1.91 16 27 C -0.11 -3.41 7.31 71.98 0.53 -2.89 16 28 C -0.13 -3.53 9.12 71.98 0.66 -2.87 16 29 H 0.10 1.49 7.87 -2.39 -0.02 1.47 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.41 10.45 5.74 -92.71 -0.53 9.92 16 33 H 0.05 1.63 7.97 -2.39 -0.02 1.61 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 37 H 0.05 2.77 6.31 -2.39 -0.02 2.75 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.24 14.15 8.31 -92.71 -0.77 13.37 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.82 7.04 -2.39 -0.02 1.80 16 42 H 0.05 1.90 5.76 -2.39 -0.01 1.88 16 43 H 0.06 1.41 6.43 -2.39 -0.02 1.40 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -62.95 350.22 5.02 -57.93 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.48 Total: 21.77 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.72 Total: 1.45 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -3.67 Total: -104.63 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.05 Total: -15.64 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 1.51 Total: -7.08 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -62.95 5.02 -57.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087269589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.401 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds