Wall clock time and date at job start Tue Mar 31 2020 11:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39894 * 109.47228 * 2 1 4 4 F 1.39902 * 109.46741 * 240.00206 * 2 1 3 5 5 C 1.50703 * 109.46976 * 120.00563 * 2 1 3 6 6 O 1.21281 * 119.99719 * 334.99542 * 5 2 1 7 7 N 1.34778 * 119.99718 * 154.99566 * 5 2 1 8 8 C 1.46503 * 119.99678 * 179.97438 * 7 5 2 9 9 H 1.09005 * 113.34482 * 22.08227 * 8 7 5 10 10 C 1.49991 * 114.12940 * 249.14413 * 8 7 5 11 11 H 1.09000 * 112.50452 * 322.39867 * 10 8 7 12 12 C 1.51194 * 126.14489 * 104.90642 * 10 8 7 13 13 C 1.54083 * 106.20562 * 161.49058 * 12 10 8 14 14 C 1.52507 * 112.58810 * 304.41167 * 13 12 10 15 15 N 1.48404 * 111.86966 * 46.84193 * 14 13 12 16 16 C 1.36931 * 123.16785 * 128.14054 * 15 14 13 17 17 H 1.08002 * 120.00085 * 223.95075 * 16 15 14 18 18 C 1.38815 * 120.00147 * 43.94225 * 16 15 14 19 19 N 1.31613 * 120.00551 * 207.33348 * 18 16 15 20 20 Si 1.86810 * 119.99326 * 27.33686 * 18 16 15 21 21 H 1.48501 * 109.46880 * 84.35878 * 20 18 16 22 22 H 1.48506 * 109.46509 * 204.35301 * 20 18 16 23 23 H 1.48501 * 109.47168 * 324.35207 * 20 18 16 24 24 C 1.45387 * 113.66454 * 308.16361 * 15 14 13 25 25 H 1.08998 * 112.08958 * 301.16587 * 24 15 14 26 26 C 1.49964 * 126.66743 * 155.95573 * 24 15 14 27 27 C 1.52998 * 114.08736 * 334.31046 * 26 24 15 28 28 C 1.53001 * 114.08408 * 106.73547 * 26 24 15 29 29 H 1.08995 * 109.46783 * 299.99585 * 1 2 3 30 30 H 1.08998 * 109.46883 * 59.99507 * 1 2 3 31 31 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00426 * 0.02562 * 7 5 2 33 33 H 1.09003 * 110.17785 * 42.27235 * 12 10 8 34 34 H 1.09004 * 110.01336 * 280.62002 * 12 10 8 35 35 H 1.09003 * 108.84435 * 183.64359 * 13 12 10 36 36 H 1.09002 * 108.84965 * 65.18430 * 13 12 10 37 37 H 1.08992 * 109.00014 * 167.46237 * 14 13 12 38 38 H 1.08994 * 108.99700 * 286.30529 * 14 13 12 39 39 H 0.97003 * 120.00074 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47029 * 67.73235 * 27 26 24 41 41 H 1.09000 * 109.47345 * 187.73488 * 27 26 24 42 42 H 1.09005 * 109.46838 * 307.73749 * 27 26 24 43 43 H 1.08995 * 109.47439 * 59.99767 * 28 26 24 44 44 H 1.09005 * 109.47370 * 180.02562 * 28 26 24 45 45 H 1.09001 * 109.47179 * 299.99199 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7105 1.2304 6 8 1.3370 -0.7706 2.2223 7 7 3.2543 -1.2792 1.2285 8 6 3.7429 -1.9694 2.4248 9 1 2.9446 -2.2952 3.0918 10 6 4.8735 -1.2690 3.1182 11 1 5.5693 -0.8061 2.4184 12 6 4.7799 -0.4838 4.4068 13 6 6.2184 -0.3717 4.9475 14 6 6.8871 -1.7315 5.1198 15 7 6.6982 -2.5954 3.9281 16 6 7.7329 -3.2182 3.2826 17 1 7.7764 -3.2148 2.2035 18 6 8.7260 -3.8537 4.0153 19 7 9.9375 -3.9743 3.5154 20 14 8.3427 -4.5379 5.7108 21 1 7.7536 -5.8943 5.5756 22 1 9.5940 -4.6187 6.5063 23 1 7.3759 -3.6444 6.3981 24 6 5.3111 -2.7179 3.5101 25 1 4.6800 -3.1279 4.2986 26 6 4.8166 -3.0606 2.1364 27 6 5.7903 -2.6971 1.0136 28 6 4.2502 -4.4764 2.0119 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.8106 -1.2308 0.4354 33 1 4.1504 -1.0112 5.1236 34 1 4.3751 0.5090 4.2102 35 1 6.1932 0.1331 5.9133 36 1 6.8098 0.2260 4.2538 37 1 7.9542 -1.5837 5.2855 38 1 6.4589 -2.2298 5.9895 39 1 10.6313 -4.4188 4.0273 40 1 6.6743 -3.3313 1.0798 41 1 5.3057 -2.8489 0.0491 42 1 6.0845 -1.6522 1.1120 43 1 3.4081 -4.5922 2.6942 44 1 3.9150 -4.6450 0.9885 45 1 5.0244 -5.2010 2.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087269590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:57 Heat of formation + Delta-G solvation = -67.333333 kcal Electronic energy + Delta-G solvation = -28776.367481 eV Core-core repulsion = 24660.017101 eV Total energy + Delta-G solvation = -4116.350380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -49.41474 -47.41353 -41.20118 -39.21264 -35.62675 -33.55658 -33.05691 -31.78868 -30.88746 -29.54435 -27.32000 -26.34588 -25.54797 -23.94655 -22.29961 -21.15877 -20.40103 -19.68902 -19.08263 -18.06301 -17.89201 -17.01591 -16.65144 -15.79786 -15.32213 -15.15864 -14.67542 -14.30908 -14.20332 -13.96997 -13.73406 -13.71050 -13.43159 -13.41445 -13.21476 -12.89886 -12.79685 -12.67536 -12.56284 -12.21074 -12.13773 -11.77177 -11.67699 -11.48175 -11.25107 -11.11628 -10.72603 -10.55921 -10.54660 -10.40594 -10.08127 -9.97669 -9.64429 -9.58780 -9.01130 -8.86676 -8.34754 -6.57366 -6.06858 -3.50461 2.03767 2.54375 3.37407 3.47954 3.51421 3.52174 3.76713 4.27753 4.29148 4.50634 4.55195 4.75002 4.94096 5.06198 5.10551 5.19931 5.25649 5.46761 5.54589 5.55313 5.65758 5.76371 5.78372 5.90483 5.94590 6.04281 6.08703 6.19277 6.30046 6.33986 6.35591 6.43099 6.49695 6.54568 6.61030 6.74988 6.81484 6.86131 6.91131 7.06724 7.27532 7.78744 7.99566 8.43856 8.91890 9.66885 10.25324 11.07738 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022909 B = 0.004060 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.928526 B = 6894.545667 C = 7270.085889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.278 3.722 3 F -0.183 7.183 4 F -0.190 7.190 5 C 0.484 3.516 6 O -0.509 6.509 7 N -0.689 5.689 8 C 0.134 3.866 9 H 0.118 0.882 10 C -0.171 4.171 11 H 0.099 0.901 12 C -0.089 4.089 13 C -0.131 4.131 14 C 0.139 3.861 15 N -0.579 5.579 16 C -0.271 4.271 17 H 0.087 0.913 18 C 0.048 3.952 19 N -0.891 5.891 20 Si 0.850 3.150 21 H -0.288 1.288 22 H -0.299 1.299 23 H -0.255 1.255 24 C 0.149 3.851 25 H 0.053 0.947 26 C -0.058 4.058 27 C -0.133 4.133 28 C -0.134 4.134 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.407 0.593 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 6.400 -6.050 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.238 3.762 3 F -0.164 7.164 4 F -0.171 7.171 5 C 0.264 3.736 6 O -0.385 6.385 7 N -0.338 5.338 8 C 0.030 3.970 9 H 0.136 0.864 10 C -0.193 4.193 11 H 0.117 0.883 12 C -0.127 4.127 13 C -0.171 4.171 14 C 0.015 3.985 15 N -0.302 5.302 16 C -0.399 4.399 17 H 0.104 0.896 18 C -0.155 4.155 19 N -0.530 5.530 20 Si 0.678 3.322 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.180 1.180 24 C 0.041 3.959 25 H 0.070 0.930 26 C -0.060 4.060 27 C -0.189 4.189 28 C -0.191 4.191 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.243 0.757 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.301 6.273 -5.342 18.265 hybrid contribution 0.383 -0.336 0.518 0.727 sum -15.918 5.936 -4.824 17.660 Atomic orbital electron populations 1.22619 0.89025 1.06261 1.05993 1.21454 0.95817 0.76292 0.82593 1.93087 1.90531 1.36191 1.96587 1.93061 1.90494 1.80677 1.52876 1.20692 0.83126 0.80830 0.88920 1.90762 1.56220 1.58461 1.33025 1.46080 1.16049 1.53779 1.17923 1.22697 0.94627 0.93710 0.85942 0.86432 1.23440 0.97748 1.00491 0.97578 0.88274 1.21107 0.96706 0.98898 0.95958 1.21962 0.95803 0.99466 0.99822 1.21436 0.98971 0.88730 0.89384 1.44001 1.00329 1.52034 1.33810 1.18821 0.99613 1.29227 0.92207 0.89612 1.25739 0.95487 0.96757 0.97488 1.69951 1.00885 1.42856 1.39355 0.87343 0.77710 0.80895 0.86229 1.21489 1.22602 1.17956 1.21448 0.88449 0.92882 0.93136 0.92961 1.21816 0.93962 0.93483 0.96698 1.21849 0.99550 1.02969 0.94574 1.21710 1.00623 0.96009 1.00804 0.88092 0.89298 0.88830 0.75672 0.92609 0.93504 0.92933 0.92480 0.91804 0.95556 0.92706 0.88934 0.94035 0.92020 0.93048 0.93153 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.92 37.16 0.33 -1.16 16 2 C 0.28 3.05 2.47 -27.88 -0.07 2.98 16 3 F -0.18 -2.21 17.05 2.25 0.04 -2.17 16 4 F -0.19 -2.07 16.51 2.25 0.04 -2.03 16 5 C 0.48 6.42 7.23 -10.98 -0.08 6.34 16 6 O -0.51 -7.96 15.69 5.56 0.09 -7.88 16 7 N -0.69 -9.02 5.26 -57.67 -0.30 -9.33 16 8 C 0.13 1.98 3.51 -71.84 -0.25 1.72 16 9 H 0.12 1.81 7.39 -51.93 -0.38 1.43 16 10 C -0.17 -2.81 2.87 -95.86 -0.28 -3.09 16 11 H 0.10 1.75 5.87 -51.93 -0.31 1.44 16 12 C -0.09 -1.44 6.11 -27.08 -0.17 -1.60 16 13 C -0.13 -2.25 5.90 -26.42 -0.16 -2.41 16 14 C 0.14 2.87 4.47 -3.24 -0.01 2.86 16 15 N -0.58 -12.71 2.32 -169.43 -0.39 -13.10 16 16 C -0.27 -6.94 9.37 -15.06 -0.14 -7.08 16 17 H 0.09 2.30 5.04 -52.49 -0.26 2.03 16 18 C 0.05 1.30 5.13 -17.43 -0.09 1.21 16 19 N -0.89 -25.96 13.97 55.49 0.78 -25.18 16 20 Si 0.85 20.88 27.32 -169.99 -4.64 16.23 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.25 -5.91 4.68 56.52 0.26 -5.65 16 24 C 0.15 2.76 3.05 -72.14 -0.22 2.54 16 25 H 0.05 0.99 7.96 -51.93 -0.41 0.58 16 26 C -0.06 -0.92 1.37 -159.16 -0.22 -1.14 16 27 C -0.13 -2.11 7.13 37.16 0.26 -1.84 16 28 C -0.13 -1.97 9.29 37.16 0.35 -1.62 16 29 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.41 4.84 7.02 -40.82 -0.29 4.55 16 33 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.42 7.23 -51.93 -0.38 1.04 16 38 H 0.03 0.55 6.39 -51.93 -0.33 0.22 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.09 1.75 5.50 -51.93 -0.29 1.47 16 41 H 0.04 0.55 7.90 -51.93 -0.41 0.14 16 42 H 0.06 1.00 5.90 -51.93 -0.31 0.70 16 43 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -28.99 349.25 -6.71 -35.71 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.84 Total: 4.76 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.74 Total: -2.28 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.08 Total: -47.61 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.64 Total: 16.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.99 -6.71 -35.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087269590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.626 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds