Wall clock time and date at job start Tue Mar 31 2020 11:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47196 * 2 1 4 4 H 1.08997 * 109.99575 * 56.19349 * 3 2 1 5 5 C 1.54324 * 109.87759 * 295.09789 * 3 2 1 6 6 H 1.09001 * 110.87959 * 336.82664 * 5 3 2 7 7 N 1.46509 * 110.71686 * 100.02911 * 5 3 2 8 8 C 1.34780 * 119.99792 * 199.97335 * 7 5 3 9 9 O 1.21274 * 119.99981 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00045 * 179.97438 * 8 7 5 11 11 H 1.09000 * 110.81232 * 56.66074 * 10 8 7 12 12 C 1.55235 * 110.89789 * 293.21965 * 10 8 7 13 13 C 1.54269 * 104.23275 * 203.78851 * 12 10 8 14 14 C 1.53883 * 106.59350 * 23.61216 * 13 12 10 15 15 F 1.39907 * 110.02834 * 240.71443 * 14 13 12 16 16 F 1.39895 * 110.07051 * 119.30922 * 14 13 12 17 17 C 1.54265 * 106.59808 * 359.97438 * 14 13 12 18 18 C 1.55153 * 102.94282 * 218.38687 * 5 3 2 19 19 C 1.54913 * 101.58044 * 35.50656 * 18 5 3 20 20 N 1.47019 * 109.88244 * 177.29681 * 3 2 1 21 21 C 1.36940 * 125.64578 * 298.31379 * 20 3 2 22 22 H 1.08001 * 120.00033 * 348.13141 * 21 20 3 23 23 C 1.38810 * 120.00044 * 168.12619 * 21 20 3 24 24 N 1.31624 * 120.00067 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46706 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47225 * 119.99917 * 25 23 21 28 28 H 1.48506 * 109.46897 * 240.00312 * 25 23 21 29 29 H 1.09001 * 109.47376 * 305.50405 * 1 2 3 30 30 H 1.08998 * 109.47008 * 65.49851 * 1 2 3 31 31 H 1.08997 * 109.47074 * 185.50336 * 1 2 3 32 32 H 1.09001 * 109.47381 * 239.99763 * 2 1 3 33 33 H 1.09003 * 109.47545 * 119.99574 * 2 1 3 34 34 H 0.96996 * 120.00035 * 19.97572 * 7 5 3 35 35 H 1.09001 * 110.46936 * 85.10250 * 12 10 8 36 36 H 1.09003 * 110.47259 * 322.47972 * 12 10 8 37 37 H 1.08993 * 110.03391 * 264.32922 * 13 12 10 38 38 H 1.08996 * 110.07410 * 142.91188 * 13 12 10 39 39 H 1.09000 * 110.48207 * 95.07368 * 17 14 13 40 40 H 1.09000 * 110.48532 * 217.58143 * 17 14 13 41 41 H 1.09007 * 111.00402 * 153.57771 * 18 5 3 42 42 H 1.08998 * 111.00847 * 277.38950 * 18 5 3 43 43 H 1.09002 * 110.36310 * 81.82848 * 19 18 5 44 44 H 1.09003 * 110.36621 * 204.04143 * 19 18 5 45 45 H 0.96997 * 120.00465 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6269 1.9839 0.8511 5 6 1.6345 2.1425 -1.3143 6 1 1.4538 1.4126 -2.1034 7 7 0.4535 2.9850 -1.1098 8 6 -0.2992 3.3576 -2.1640 9 8 0.0009 2.9951 -3.2816 10 6 -1.5143 4.2237 -1.9536 11 1 -1.2465 5.1499 -1.4451 12 6 -2.6095 3.4587 -1.1630 13 6 -3.9229 4.1695 -1.5498 14 6 -3.6731 4.8448 -2.9098 15 9 -3.8421 6.2290 -2.7957 16 9 -4.5529 4.3324 -3.8691 17 6 -2.2164 4.5214 -3.3014 18 6 2.8776 3.0105 -1.6436 19 6 4.0311 2.1009 -1.1519 20 7 3.5087 1.4536 0.0652 21 6 4.2659 0.9473 1.0877 22 1 3.7971 0.6672 2.0194 23 6 5.6361 0.7939 0.9265 24 7 6.2075 1.1356 -0.2089 25 14 6.6691 0.1025 2.3209 26 1 5.7940 -0.2006 3.4818 27 1 7.3415 -1.1419 1.8689 28 1 7.6928 1.1013 2.7208 29 1 -0.3634 0.5968 0.8366 30 1 -0.3633 0.4262 -0.9351 31 1 -0.3633 -1.0229 0.0986 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2133 3.2747 -0.2158 35 1 -2.4329 3.5409 -0.0905 36 1 -2.6383 2.4123 -1.4668 37 1 -4.1758 4.9201 -0.8011 38 1 -4.7302 3.4423 -1.6369 39 1 -2.1813 3.6465 -3.9506 40 1 -1.7541 5.3780 -3.7918 41 1 2.9538 3.1931 -2.7155 42 1 2.8564 3.9493 -1.0901 43 1 4.2716 1.3521 -1.9065 44 1 4.9120 2.6987 -0.9174 45 1 7.1649 1.0281 -0.3218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087595706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:37 Heat of formation + Delta-G solvation = -131.746284 kcal Electronic energy + Delta-G solvation = -27619.430712 eV Core-core repulsion = 23500.287177 eV Total energy + Delta-G solvation = -4119.143535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.16444 -47.23469 -40.14161 -38.11188 -36.65808 -34.09901 -32.81422 -31.75952 -29.82101 -29.15021 -28.26022 -26.45876 -24.51395 -22.97757 -21.89420 -21.25998 -20.42359 -20.16964 -19.43379 -18.04365 -17.35569 -16.94889 -16.61814 -15.96945 -15.92798 -14.97289 -14.83290 -14.72085 -14.27946 -14.18837 -14.02333 -13.81795 -13.57456 -13.47474 -13.24367 -12.79131 -12.40609 -12.32163 -12.12629 -12.04832 -11.98547 -11.70241 -11.64412 -11.23552 -11.19270 -11.02942 -10.93348 -10.87012 -10.65573 -10.49125 -10.31816 -10.08387 -9.81426 -9.68564 -9.62132 -8.71467 -8.61588 -6.86876 -5.77640 -3.14507 2.64438 3.11042 3.35932 3.41694 3.44122 3.45839 3.71727 3.77966 4.09511 4.44603 4.54034 4.71160 4.77453 4.87308 4.89283 5.03970 5.25155 5.30220 5.31395 5.39457 5.47307 5.50889 5.62783 5.65582 5.69096 5.75445 5.76087 5.80998 5.99860 6.18285 6.25096 6.35598 6.41299 6.52135 6.64451 6.67991 6.89123 7.08989 7.49337 7.55812 7.65186 7.76557 8.22527 8.31841 9.14548 9.75641 10.42104 11.33249 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.030128 B = 0.002854 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.160336 B = 9807.334097 C =10172.899083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.035 0.965 5 C 0.138 3.862 6 H 0.092 0.908 7 N -0.710 5.710 8 C 0.522 3.478 9 O -0.539 6.539 10 C -0.115 4.115 11 H 0.111 0.889 12 C -0.111 4.111 13 C -0.162 4.162 14 C 0.280 3.720 15 F -0.199 7.199 16 F -0.198 7.198 17 C -0.142 4.142 18 C -0.156 4.156 19 C 0.172 3.828 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.328 6.459 -1.450 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.110 0.890 7 N -0.360 5.360 8 C 0.307 3.693 9 O -0.415 6.415 10 C -0.137 4.137 11 H 0.129 0.871 12 C -0.148 4.148 13 C -0.200 4.200 14 C 0.244 3.756 15 F -0.180 7.180 16 F -0.179 7.179 17 C -0.180 4.180 18 C -0.196 4.196 19 C 0.047 3.953 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.201 4.201 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.880 6.165 -2.231 19.986 hybrid contribution 0.379 -0.136 1.014 1.091 sum -18.502 6.028 -1.217 19.497 Atomic orbital electron populations 1.21767 0.97268 1.00535 1.00836 1.22026 0.93597 0.99199 1.02431 1.21053 0.87064 0.93307 0.93186 0.94749 1.22127 0.83503 0.92372 0.98669 0.89008 1.46066 1.28149 1.52238 1.09557 1.20078 0.83622 0.80605 0.84994 1.90715 1.71523 1.55704 1.23604 1.22294 0.94076 1.00052 0.97261 0.87090 1.22396 0.91460 1.00004 1.00977 1.23171 1.00406 1.01784 0.94621 1.21826 0.89788 0.75451 0.88542 1.93022 1.96394 1.32096 1.96477 1.93019 1.71670 1.86594 1.66650 1.23183 0.90565 1.05953 0.98331 1.23424 0.96740 0.99048 1.00373 1.21491 0.93408 0.92978 0.87459 1.44465 0.98333 1.68379 1.20747 1.18997 0.89121 1.35524 0.91903 0.90577 1.24875 0.97012 1.01111 0.97148 1.69933 1.10037 1.52623 1.23766 0.86073 0.80310 0.78456 0.81065 1.20463 1.21697 1.21753 0.93436 0.93334 0.93678 0.92352 0.91731 0.76796 0.89231 0.89760 0.88399 0.88384 0.86933 0.88434 0.91901 0.92070 0.95689 0.90216 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.57 37.15 0.36 -1.61 16 2 C -0.13 -2.33 5.41 -26.73 -0.14 -2.48 16 3 C 0.16 3.04 2.94 -66.95 -0.20 2.84 16 4 H 0.03 0.63 7.69 -51.93 -0.40 0.23 16 5 C 0.14 2.32 1.92 -66.09 -0.13 2.20 16 6 H 0.09 1.71 7.34 -51.93 -0.38 1.32 16 7 N -0.71 -9.07 4.94 -52.03 -0.26 -9.33 16 8 C 0.52 6.68 7.15 -10.98 -0.08 6.61 16 9 O -0.54 -9.10 15.45 5.56 0.09 -9.02 16 10 C -0.12 -1.02 3.30 -89.61 -0.30 -1.32 16 11 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.11 -0.74 6.28 -24.88 -0.16 -0.90 16 13 C -0.16 -1.07 6.50 -25.61 -0.17 -1.24 16 14 C 0.28 2.59 2.57 -25.61 -0.07 2.52 16 15 F -0.20 -2.07 17.04 2.25 0.04 -2.03 16 16 F -0.20 -2.17 17.04 2.25 0.04 -2.13 16 17 C -0.14 -1.38 5.47 -25.09 -0.14 -1.51 16 18 C -0.16 -2.95 6.77 -24.58 -0.17 -3.12 16 19 C 0.17 4.05 5.46 -2.53 -0.01 4.04 16 20 N -0.59 -14.23 3.13 -162.57 -0.51 -14.74 16 21 C -0.23 -6.00 9.77 -15.06 -0.15 -6.14 16 22 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 23 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 24 N -0.92 -26.18 10.47 55.49 0.58 -25.60 16 25 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.06 1.22 7.91 -51.93 -0.41 0.81 16 34 H 0.40 4.09 8.31 -40.82 -0.34 3.75 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 37 H 0.10 0.53 8.02 -51.93 -0.42 0.11 16 38 H 0.10 0.58 8.02 -51.93 -0.42 0.16 16 39 H 0.11 1.24 7.41 -51.93 -0.38 0.86 16 40 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.03 0.65 8.11 -51.93 -0.42 0.22 16 44 H 0.08 2.10 6.73 -51.93 -0.35 1.75 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -30.78 363.67 -8.24 -39.02 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.24 Total: 2.26 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.44 Total: -0.34 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.18 Total: -49.67 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.78 -8.24 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087595706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.725 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds