Wall clock time and date at job start Tue Mar 31 2020 11:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 H 1.09000 * 109.99865 * 56.15624 * 3 2 1 5 5 C 1.54327 * 109.87966 * 295.05774 * 3 2 1 6 6 H 1.08993 * 110.72174 * 336.93410 * 5 3 2 7 7 N 1.46498 * 110.71753 * 100.02856 * 5 3 2 8 8 C 1.34773 * 119.99887 * 202.55613 * 7 5 3 9 9 O 1.21280 * 120.00169 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00116 * 179.72682 * 8 7 5 11 11 H 1.09004 * 110.43405 * 300.97384 * 10 8 7 12 12 C 1.54891 * 110.48604 * 63.51745 * 10 8 7 13 13 C 1.55031 * 102.68207 * 156.51997 * 12 10 8 14 14 C 1.54268 * 104.27991 * 322.23177 * 13 12 10 15 15 F 1.39901 * 110.03086 * 264.23175 * 14 13 12 16 16 F 1.39907 * 110.03002 * 142.80479 * 14 13 12 17 17 C 1.53873 * 106.59842 * 23.51897 * 14 13 12 18 18 C 1.55155 * 103.09893 * 218.48096 * 5 3 2 19 19 C 1.54907 * 101.58466 * 35.41465 * 18 5 3 20 20 N 1.47316 * 110.06178 * 177.32580 * 3 2 1 21 21 C 1.36935 * 125.62053 * 298.32080 * 20 3 2 22 22 H 1.08007 * 119.99436 * 347.94743 * 21 20 3 23 23 C 1.38810 * 120.00491 * 167.94715 * 21 20 3 24 24 N 1.31618 * 119.99897 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00081 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47294 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47191 * 119.99925 * 25 23 21 28 28 H 1.48504 * 109.46853 * 239.99717 * 25 23 21 29 29 H 1.09001 * 109.46946 * 185.50001 * 1 2 3 30 30 H 1.08998 * 109.47198 * 305.50252 * 1 2 3 31 31 H 1.09002 * 109.47025 * 65.50146 * 1 2 3 32 32 H 1.08990 * 109.46919 * 239.99586 * 2 1 3 33 33 H 1.08999 * 109.46705 * 119.99543 * 2 1 3 34 34 H 0.97000 * 120.00382 * 22.55668 * 7 5 3 35 35 H 1.09001 * 110.75364 * 274.93221 * 12 10 8 36 36 H 1.08994 * 110.75874 * 38.30586 * 12 10 8 37 37 H 1.09007 * 110.52499 * 203.48711 * 13 12 10 38 38 H 1.08999 * 110.48013 * 80.95953 * 13 12 10 39 39 H 1.08993 * 110.02861 * 240.71459 * 17 14 13 40 40 H 1.08997 * 110.07119 * 119.30542 * 17 14 13 41 41 H 1.09004 * 111.00324 * 153.49338 * 18 5 3 42 42 H 1.09006 * 111.00275 * 277.34238 * 18 5 3 43 43 H 1.08997 * 110.36956 * 81.82911 * 19 18 5 44 44 H 1.09001 * 110.36657 * 204.04211 * 19 18 5 45 45 H 0.96997 * 120.00274 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6265 1.9841 0.8507 5 6 1.6354 2.1422 -1.3147 6 1 1.4541 1.4098 -2.1013 7 7 0.4543 2.9846 -1.1112 8 6 -0.3270 3.3140 -2.1588 9 8 -0.0527 2.9125 -3.2698 10 6 -1.5454 4.1755 -1.9486 11 1 -2.2305 3.7010 -1.2459 12 6 -1.1351 5.5802 -1.4409 13 6 -2.3404 6.4597 -1.8617 14 6 -2.7583 5.8996 -3.2370 15 9 -2.1695 6.6512 -4.2596 16 9 -4.1515 5.9273 -3.3625 17 6 -2.2529 4.4473 -3.2922 18 6 2.8778 3.0097 -1.6481 19 6 4.0324 2.1021 -1.1552 20 7 3.5117 1.4582 0.0646 21 6 4.2706 0.9540 1.0868 22 1 3.8030 0.6751 2.0196 23 6 5.6406 0.8011 0.9242 24 7 6.2103 1.1404 -0.2128 25 14 6.6756 0.1126 2.3185 26 1 5.8021 -0.1904 3.4805 27 1 7.3483 -1.1323 1.8677 28 1 7.6993 1.1125 2.7155 29 1 -0.3633 -1.0230 0.0985 30 1 -0.3633 0.5968 0.8366 31 1 -0.3633 0.4262 -0.9352 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.2347 3.3055 -0.2226 35 1 -1.0144 5.5793 -0.3576 36 1 -0.2222 5.9170 -1.9320 37 1 -2.0393 7.5036 -1.9504 38 1 -3.1552 6.3584 -1.1448 39 1 -1.5489 4.3281 -4.1157 40 1 -3.0925 3.7635 -3.4171 41 1 2.9526 3.1892 -2.7207 42 1 2.8572 3.9498 -1.0967 43 1 4.2723 1.3511 -1.9078 44 1 4.9132 2.7010 -0.9236 45 1 7.1677 1.0340 -0.3263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087595707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:43 Heat of formation + Delta-G solvation = -131.567862 kcal Electronic energy + Delta-G solvation = -27628.225561 eV Core-core repulsion = 23509.089762 eV Total energy + Delta-G solvation = -4119.135798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -49.13134 -47.20392 -40.16509 -38.10026 -36.63168 -34.10182 -32.81613 -31.75638 -29.77880 -29.15290 -28.26070 -26.45306 -24.50044 -22.87693 -21.95449 -21.32870 -20.39721 -20.15221 -19.35370 -18.05492 -17.36145 -16.90210 -16.73559 -16.00626 -15.86496 -15.01625 -14.81224 -14.51088 -14.39186 -14.17745 -13.96288 -13.79506 -13.53794 -13.42021 -13.30052 -12.78167 -12.38123 -12.25739 -12.10800 -12.02471 -11.94863 -11.73897 -11.66594 -11.24988 -11.19272 -10.99517 -10.93231 -10.86889 -10.65898 -10.49257 -10.32085 -10.08293 -9.80446 -9.68453 -9.62110 -8.71084 -8.61501 -6.86794 -5.77466 -3.14238 2.65354 3.11948 3.35994 3.41881 3.44219 3.49036 3.72044 3.79412 4.12320 4.44693 4.54687 4.72928 4.77388 4.87172 4.92442 5.06274 5.24577 5.31143 5.32014 5.41670 5.47330 5.51109 5.62697 5.68179 5.69555 5.75861 5.80226 5.81539 6.00450 6.18399 6.25433 6.36125 6.41639 6.52165 6.63984 6.68401 6.89355 7.09117 7.49209 7.55775 7.65241 7.76685 8.22436 8.31870 9.14717 9.75572 10.42277 11.33394 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.002910 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.819611 B = 9621.265108 C = 9973.486233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.137 3.863 6 H 0.093 0.907 7 N -0.710 5.710 8 C 0.519 3.481 9 O -0.539 6.539 10 C -0.112 4.112 11 H 0.111 0.889 12 C -0.113 4.113 13 C -0.160 4.160 14 C 0.281 3.719 15 F -0.196 7.196 16 F -0.201 7.201 17 C -0.152 4.152 18 C -0.156 4.156 19 C 0.172 3.828 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.917 5.917 25 Si 0.910 3.090 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.057 8.696 -1.445 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.111 0.889 7 N -0.360 5.360 8 C 0.304 3.696 9 O -0.416 6.416 10 C -0.134 4.134 11 H 0.129 0.871 12 C -0.151 4.151 13 C -0.198 4.198 14 C 0.245 3.755 15 F -0.177 7.177 16 F -0.182 7.182 17 C -0.190 4.190 18 C -0.195 4.195 19 C 0.047 3.953 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.232 0.768 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.620 8.367 -2.234 19.633 hybrid contribution 0.365 -0.242 0.969 1.063 sum -17.256 8.126 -1.265 19.115 Atomic orbital electron populations 1.21767 0.97242 1.00540 1.00853 1.22013 0.93604 0.99180 1.02416 1.21121 0.87038 0.93318 0.93237 0.94693 1.22134 0.83487 0.92416 0.98711 0.88922 1.46040 1.27501 1.52098 1.10313 1.20159 0.83829 0.80661 0.84904 1.90707 1.72698 1.54255 1.23910 1.22090 0.96352 0.96698 0.98260 0.87136 1.22529 0.98040 0.91941 1.02583 1.23387 1.00410 1.01794 0.94168 1.21811 0.74174 0.92593 0.86970 1.93032 1.83599 1.78507 1.62593 1.93013 1.31138 1.97312 1.96708 1.23071 1.03071 0.92752 1.00087 1.23418 0.96748 0.99054 1.00315 1.21486 0.93391 0.93035 0.87399 1.44546 0.98304 1.68535 1.20563 1.19000 0.89092 1.35600 0.91830 0.90588 1.24873 0.97022 1.01129 0.97132 1.69930 1.10072 1.52705 1.23660 0.86075 0.80319 0.78454 0.81067 1.20470 1.21709 1.21749 0.93667 0.93450 0.93342 0.92353 0.91737 0.76797 0.88950 0.89623 0.88548 0.88082 0.86682 0.88349 0.91936 0.92047 0.95724 0.90197 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.57 37.16 0.36 -1.67 16 2 C -0.13 -2.35 5.42 -26.73 -0.14 -2.49 16 3 C 0.16 3.03 2.95 -66.79 -0.20 2.83 16 4 H 0.04 0.64 7.70 -51.93 -0.40 0.24 16 5 C 0.14 2.32 1.96 -66.10 -0.13 2.19 16 6 H 0.09 1.74 7.25 -51.93 -0.38 1.36 16 7 N -0.71 -9.06 4.89 -52.03 -0.25 -9.31 16 8 C 0.52 6.67 7.14 -10.99 -0.08 6.59 16 9 O -0.54 -9.17 15.12 5.56 0.08 -9.09 16 10 C -0.11 -0.98 3.25 -90.11 -0.29 -1.27 16 11 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.11 -0.81 6.31 -24.66 -0.16 -0.96 16 13 C -0.16 -1.09 6.40 -24.99 -0.16 -1.25 16 14 C 0.28 2.69 2.58 -25.61 -0.07 2.62 16 15 F -0.20 -2.31 17.04 2.25 0.04 -2.27 16 16 F -0.20 -2.11 17.04 2.25 0.04 -2.07 16 17 C -0.15 -1.48 5.87 -25.61 -0.15 -1.63 16 18 C -0.16 -2.92 6.77 -24.58 -0.17 -3.09 16 19 C 0.17 4.05 5.46 -2.53 -0.01 4.04 16 20 N -0.59 -14.23 3.14 -162.35 -0.51 -14.74 16 21 C -0.23 -5.99 9.79 -15.06 -0.15 -6.14 16 22 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 23 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 24 N -0.92 -26.17 10.47 55.49 0.58 -25.59 16 25 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 7.38 -51.93 -0.38 0.28 16 32 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 33 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 34 H 0.40 4.06 8.34 -40.82 -0.34 3.72 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 37 H 0.10 0.60 8.11 -51.93 -0.42 0.18 16 38 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.11 1.38 6.75 -51.93 -0.35 1.03 16 40 H 0.10 0.86 8.02 -51.93 -0.42 0.44 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 44 H 0.08 2.10 6.73 -51.93 -0.35 1.75 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -30.93 363.07 -8.23 -39.16 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.21 Total: 2.46 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.44 Total: -0.46 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.18 Total: -49.64 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.93 -8.23 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087595707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.407 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds