Wall clock time and date at job start Tue Mar 31 2020 11:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46941 * 2 1 4 4 H 1.08998 * 109.87058 * 55.83075 * 3 2 1 5 5 C 1.54315 * 109.88453 * 294.81295 * 3 2 1 6 6 H 1.09004 * 110.87460 * 336.81829 * 5 3 2 7 7 N 1.46493 * 110.72211 * 100.02675 * 5 3 2 8 8 C 1.34783 * 120.00325 * 199.97438 * 7 5 3 9 9 O 1.21285 * 119.99670 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00086 * 179.97438 * 8 7 5 11 11 C 1.53003 * 109.46808 * 180.02562 * 10 8 7 12 12 C 1.53776 * 113.61592 * 274.13607 * 11 10 8 13 13 C 1.53950 * 87.02135 * 220.05017 * 12 11 10 14 14 F 1.39899 * 113.53939 * 270.81012 * 13 12 11 15 15 F 1.39902 * 113.66608 * 139.93320 * 13 12 11 16 16 C 1.53781 * 87.11293 * 25.36483 * 13 12 11 17 17 C 1.55166 * 102.94054 * 218.39060 * 5 3 2 18 18 C 1.54902 * 101.61604 * 35.48242 * 17 5 3 19 19 N 1.47026 * 109.87813 * 176.99898 * 3 2 1 20 20 C 1.36933 * 125.65678 * 298.39582 * 19 3 2 21 21 H 1.08008 * 119.99359 * 345.38593 * 20 19 3 22 22 C 1.38804 * 120.00314 * 165.38455 * 20 19 3 23 23 N 1.31615 * 120.00382 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99963 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47030 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46949 * 120.00181 * 24 22 20 27 27 H 1.48493 * 109.47046 * 240.00033 * 24 22 20 28 28 H 1.08996 * 109.47568 * 65.55704 * 1 2 3 29 29 H 1.08997 * 109.46907 * 185.56420 * 1 2 3 30 30 H 1.09007 * 109.47176 * 305.55914 * 1 2 3 31 31 H 1.08997 * 109.46964 * 240.00283 * 2 1 3 32 32 H 1.08997 * 109.47112 * 120.00171 * 2 1 3 33 33 H 0.97003 * 120.00115 * 19.98000 * 7 5 3 34 34 H 1.08999 * 109.46921 * 300.00367 * 10 8 7 35 35 H 1.09003 * 109.46885 * 60.00557 * 10 8 7 36 36 H 1.08999 * 112.84901 * 45.33373 * 11 10 8 37 37 H 1.08997 * 113.61686 * 334.57200 * 12 11 10 38 38 H 1.09003 * 113.61675 * 105.47011 * 12 11 10 39 39 H 1.08994 * 113.61502 * 220.09195 * 16 13 12 40 40 H 1.08996 * 113.61288 * 89.18649 * 16 13 12 41 41 H 1.09007 * 111.00039 * 153.57444 * 17 5 3 42 42 H 1.09002 * 111.00135 * 277.38624 * 17 5 3 43 43 H 1.09000 * 110.36938 * 81.84756 * 18 17 5 44 44 H 1.09004 * 110.36809 * 204.16714 * 18 17 5 45 45 H 0.96993 * 120.00244 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6206 1.9837 0.8481 5 6 1.6407 2.1404 -1.3172 6 1 1.4639 1.4091 -2.1060 7 7 0.4588 2.9831 -1.1198 8 6 -0.2888 3.3540 -2.1781 9 8 0.0166 2.9897 -3.2938 10 6 -1.5049 4.2205 -1.9749 11 6 -2.1687 4.4927 -3.3263 12 6 -1.5719 5.6963 -4.0744 13 6 -3.0128 6.0575 -4.4785 14 9 -3.4247 5.4586 -5.6738 15 9 -3.2805 7.4301 -4.4367 16 6 -3.4722 5.3018 -3.2204 17 6 2.8855 3.0079 -1.6420 18 6 4.0372 2.1000 -1.1431 19 7 3.5084 1.4536 0.0724 20 6 4.2608 0.9477 1.0985 21 1 3.7948 0.7095 2.0433 22 6 5.6223 0.7412 0.9245 23 7 6.1903 1.0320 -0.2266 24 14 6.6489 0.0517 2.3247 25 1 5.7792 -0.1893 3.5040 26 1 7.2707 -1.2279 1.8990 27 1 7.7126 1.0236 2.6838 28 1 -0.3634 0.4252 -0.9355 29 1 -0.3633 -1.0228 0.0996 30 1 -0.3634 0.5977 0.8361 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.2143 3.2743 -0.2273 34 1 -2.2105 3.7086 -1.3204 35 1 -1.2063 5.1648 -1.5196 36 1 -2.2592 3.5974 -3.9413 37 1 -1.1053 6.4309 -3.4180 38 1 -0.9384 5.4168 -4.9163 39 1 -4.3707 4.7042 -3.3738 40 1 -3.5262 5.9283 -2.3301 41 1 2.9668 3.1887 -2.7139 42 1 2.8616 3.9475 -1.0900 43 1 4.2820 1.3499 -1.8952 44 1 4.9159 2.6989 -0.9035 45 1 7.1416 0.8872 -0.3483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087628149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:32 Heat of formation + Delta-G solvation = -103.877163 kcal Electronic energy + Delta-G solvation = -27115.516382 eV Core-core repulsion = 22997.581342 eV Total energy + Delta-G solvation = -4117.935040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.02905 -47.37130 -40.02935 -38.44201 -37.34711 -34.03125 -32.79623 -31.83318 -30.41406 -28.83716 -26.57900 -26.52735 -24.58472 -23.47895 -22.15920 -20.68747 -20.15933 -20.14750 -19.48467 -17.64997 -17.03228 -16.87112 -16.78835 -16.43175 -15.98115 -15.32499 -14.77491 -14.66642 -14.24601 -14.07941 -13.83062 -13.82337 -13.67600 -13.46502 -13.21848 -12.86079 -12.73200 -12.71292 -12.01619 -11.97027 -11.67698 -11.56678 -11.44256 -11.18975 -11.14025 -10.92762 -10.86770 -10.68817 -10.63349 -10.47801 -10.29457 -10.07282 -9.80462 -9.68932 -9.58681 -8.68067 -8.59150 -6.83976 -5.78494 -3.15085 2.75792 3.19525 3.27107 3.36267 3.42234 3.44345 3.53643 3.99157 4.05733 4.12975 4.45231 4.73886 4.91332 5.07285 5.08845 5.14447 5.20850 5.32143 5.33330 5.39881 5.47684 5.51351 5.52562 5.55141 5.71161 5.77662 5.82719 5.97688 6.02110 6.19769 6.28127 6.37712 6.43273 6.54571 6.65573 6.70963 6.91947 7.11728 7.48171 7.58108 7.70658 7.76135 8.22983 8.38998 9.14853 9.75959 10.43651 11.33480 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.002585 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.783315 B =10827.268284 C =11281.341487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.034 0.966 5 C 0.138 3.862 6 H 0.091 0.909 7 N -0.715 5.715 8 C 0.510 3.490 9 O -0.541 6.541 10 C -0.130 4.130 11 C -0.086 4.086 12 C -0.158 4.158 13 C 0.251 3.749 14 F -0.180 7.180 15 F -0.194 7.194 16 C -0.162 4.162 17 C -0.156 4.156 18 C 0.174 3.826 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.075 0.925 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 8.482 -3.179 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.109 0.891 7 N -0.365 5.365 8 C 0.296 3.704 9 O -0.418 6.418 10 C -0.171 4.171 11 C -0.105 4.105 12 C -0.196 4.196 13 C 0.214 3.786 14 F -0.161 7.161 15 F -0.175 7.175 16 C -0.200 4.200 17 C -0.195 4.195 18 C 0.049 3.951 19 N -0.319 5.319 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.480 8.184 -3.975 20.599 hybrid contribution 0.426 -0.193 0.969 1.076 sum -18.055 7.991 -3.006 19.972 Atomic orbital electron populations 1.21767 0.97289 1.00504 1.00838 1.22019 0.93551 0.99225 1.02414 1.21063 0.87092 0.93320 0.93182 0.94811 1.22085 0.83563 0.92365 0.98598 0.89083 1.46112 1.28394 1.52420 1.09616 1.20475 0.84233 0.80803 0.84923 1.90709 1.71523 1.55739 1.23820 1.21620 0.96201 1.01070 0.98160 1.22140 0.93599 0.98158 0.96576 1.24195 0.94146 0.98621 1.02605 1.22180 0.98182 0.74934 0.83270 1.93020 1.91681 1.82762 1.48642 1.93004 1.95159 1.32744 1.96570 1.24188 1.00145 0.99003 0.96671 1.23411 0.96813 0.98993 1.00316 1.21438 0.93136 0.92897 0.87653 1.44466 0.98363 1.68321 1.20737 1.18976 0.89923 1.35890 0.90869 0.90676 1.24913 0.97254 1.00901 0.96967 1.69934 1.10622 1.52792 1.22847 0.86089 0.80263 0.78513 0.81145 1.20447 1.21681 1.21741 0.93331 0.93705 0.93475 0.92386 0.91734 0.76884 0.88230 0.88497 0.86794 0.87154 0.88375 0.88739 0.86901 0.91936 0.92153 0.95433 0.90851 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.58 37.16 0.36 -1.67 16 2 C -0.13 -2.37 5.41 -26.73 -0.14 -2.51 16 3 C 0.16 3.06 2.94 -66.95 -0.20 2.87 16 4 H 0.03 0.62 7.68 -51.93 -0.40 0.22 16 5 C 0.14 2.35 1.93 -66.10 -0.13 2.23 16 6 H 0.09 1.71 7.35 -51.93 -0.38 1.33 16 7 N -0.72 -9.13 4.94 -52.03 -0.26 -9.39 16 8 C 0.51 6.34 7.83 -10.98 -0.09 6.26 16 9 O -0.54 -8.94 15.51 5.55 0.09 -8.86 16 10 C -0.13 -1.00 5.52 -27.88 -0.15 -1.15 16 11 C -0.09 -0.71 3.09 -89.81 -0.28 -0.99 16 12 C -0.16 -1.39 7.43 -25.83 -0.19 -1.58 16 13 C 0.25 2.32 3.28 -25.83 -0.08 2.23 16 14 F -0.18 -2.02 17.38 2.25 0.04 -1.98 16 15 F -0.19 -2.02 17.41 2.25 0.04 -1.98 16 16 C -0.16 -1.06 7.43 -25.92 -0.19 -1.26 16 17 C -0.16 -2.94 6.76 -24.58 -0.17 -3.11 16 18 C 0.17 4.12 5.41 -2.51 -0.01 4.10 16 19 N -0.59 -14.31 3.13 -162.54 -0.51 -14.82 16 20 C -0.23 -6.06 9.75 -15.06 -0.15 -6.20 16 21 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 22 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 23 N -0.92 -26.25 10.57 55.49 0.59 -25.66 16 24 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 32 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 33 H 0.40 4.08 8.31 -40.82 -0.34 3.74 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.56 7.88 -51.93 -0.41 0.15 16 36 H 0.11 1.14 7.73 -51.93 -0.40 0.74 16 37 H 0.11 0.82 7.92 -51.93 -0.41 0.41 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.07 1.93 6.93 -51.93 -0.36 1.57 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -31.20 368.12 -8.27 -39.48 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.26 Total: 2.15 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.52 Total: -0.97 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.18 Total: -49.87 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.20 -8.27 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087628149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.401 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds