Wall clock time and date at job start Tue Mar 31 2020 11:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.09002 * 109.87206 * 311.44719 * 3 2 1 5 5 C 1.54325 * 110.01214 * 190.35009 * 3 2 1 6 6 H 1.09003 * 110.71853 * 336.68138 * 5 3 2 7 7 N 1.46501 * 110.72126 * 99.95181 * 5 3 2 8 8 C 1.34778 * 119.99970 * 205.00673 * 7 5 3 9 9 O 1.21282 * 120.00100 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99785 * 180.02562 * 8 7 5 11 11 C 1.52994 * 112.85523 * 50.32489 * 10 8 7 12 12 C 1.53785 * 113.61046 * 279.12418 * 10 8 7 13 13 C 1.53950 * 87.02175 * 220.04970 * 12 10 8 14 14 F 1.39893 * 113.54120 * 270.81387 * 13 12 10 15 15 F 1.39899 * 113.66437 * 139.93061 * 13 12 10 16 16 C 1.53783 * 113.61069 * 181.52470 * 10 8 7 17 17 C 1.55155 * 102.94394 * 218.31679 * 5 3 2 18 18 C 1.54693 * 101.67738 * 35.33256 * 17 5 3 19 19 N 1.47022 * 109.88654 * 72.46437 * 3 2 1 20 20 C 1.36942 * 125.64620 * 298.47651 * 19 3 2 21 21 H 1.08003 * 119.99938 * 47.67090 * 20 19 3 22 22 C 1.38814 * 120.00009 * 227.67107 * 20 19 3 23 23 N 1.31617 * 119.99724 * 193.52023 * 22 20 19 24 24 Si 1.86801 * 119.99836 * 13.51882 * 22 20 19 25 25 H 1.48494 * 109.46969 * 267.43185 * 24 22 20 26 26 H 1.48502 * 109.46722 * 147.43147 * 24 22 20 27 27 H 1.48502 * 109.47157 * 27.43498 * 24 22 20 28 28 H 1.09003 * 109.46796 * 158.77863 * 1 2 3 29 29 H 1.08995 * 109.47811 * 278.78156 * 1 2 3 30 30 H 1.09000 * 109.47123 * 38.78696 * 1 2 3 31 31 H 1.09000 * 109.47332 * 239.99575 * 2 1 3 32 32 H 1.09005 * 109.46735 * 119.99693 * 2 1 3 33 33 H 0.97003 * 120.00087 * 25.00044 * 7 5 3 34 34 H 1.09001 * 109.47013 * 69.67007 * 11 10 8 35 35 H 1.09001 * 109.47407 * 189.67139 * 11 10 8 36 36 H 1.09002 * 109.47108 * 309.66736 * 11 10 8 37 37 H 1.08996 * 113.61512 * 334.57903 * 12 10 8 38 38 H 1.09003 * 113.60933 * 105.46898 * 12 10 8 39 39 H 1.09006 * 113.61330 * 254.51990 * 16 10 8 40 40 H 1.09001 * 113.61786 * 25.42665 * 16 10 8 41 41 H 1.08997 * 111.00258 * 153.57541 * 17 5 3 42 42 H 1.09002 * 111.00500 * 277.38805 * 17 5 3 43 43 H 1.09003 * 110.38991 * 204.36513 * 18 17 5 44 44 H 1.08999 * 110.23561 * 82.11507 * 18 17 5 45 45 H 0.96996 * 119.99836 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5237 2.0180 -0.7684 5 6 3.5609 1.4649 -0.2605 6 1 4.0132 0.5119 0.0138 7 7 3.8421 1.7897 -1.6611 8 6 4.9969 1.3868 -2.2275 9 8 5.8034 0.7559 -1.5776 10 6 5.2864 1.7214 -3.6681 11 6 5.0848 3.2043 -3.9859 12 6 4.5996 0.7778 -4.6696 13 6 5.9011 0.8317 -5.4901 14 9 5.9317 1.8750 -6.4215 15 9 6.2694 -0.4007 -6.0404 16 6 6.6256 1.1595 -4.1738 17 6 4.0572 2.5980 0.6760 18 6 3.1172 2.4323 1.8934 19 7 1.8139 2.0528 1.3183 20 6 0.5942 2.2428 1.9113 21 1 -0.1227 1.4356 1.9422 22 6 0.2794 3.4727 2.4726 23 7 -0.7637 3.5857 3.2672 24 14 1.3362 4.9673 2.1002 25 1 2.3871 5.1021 3.1406 26 1 0.4864 6.1852 2.0941 27 1 1.9750 4.8028 0.7697 28 1 -0.3633 -0.9580 -0.3720 29 1 -0.3634 0.1569 1.0155 30 1 -0.3633 0.8010 -0.6438 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.1972 2.2945 -2.1809 34 1 5.8634 3.7898 -3.4969 35 1 5.1395 3.3556 -5.0639 36 1 4.1079 3.5241 -3.6232 37 1 4.3815 -0.2088 -4.2609 38 1 3.7445 1.2259 -5.1756 39 1 7.4039 1.9153 -4.2803 40 1 6.9626 0.2773 -3.6293 41 1 5.0980 2.4424 0.9598 42 1 3.9228 3.5753 0.2123 43 1 3.0322 3.3725 2.4383 44 1 3.4860 1.6444 2.5500 45 1 -0.9840 4.4451 3.6592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087792084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:28 Heat of formation + Delta-G solvation = -95.411001 kcal Electronic energy + Delta-G solvation = -27983.416789 eV Core-core repulsion = 23865.848869 eV Total energy + Delta-G solvation = -4117.567919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.15948 -47.47582 -40.63011 -38.59808 -37.14136 -34.27998 -32.63357 -32.20697 -30.04277 -29.06972 -27.18723 -26.67432 -25.06846 -23.92817 -22.13100 -21.66597 -20.43687 -20.05724 -18.98394 -18.24509 -17.12099 -16.98356 -16.83571 -16.37898 -16.09899 -15.17655 -14.96959 -14.48657 -14.38047 -14.23878 -14.04075 -13.85493 -13.80710 -13.74572 -12.93564 -12.75431 -12.65214 -12.57508 -12.47917 -12.27515 -12.15122 -11.91935 -11.60941 -11.52221 -11.33378 -11.25085 -10.97624 -10.85597 -10.80611 -10.51404 -10.33163 -10.09076 -9.98257 -9.75545 -9.46176 -8.87359 -8.56781 -6.66378 -6.04263 -3.63722 2.45684 2.97209 3.17240 3.26977 3.38980 3.42400 3.44142 3.83206 3.85293 4.09543 4.45441 4.59650 4.70973 4.91983 4.99595 5.08243 5.09634 5.14393 5.18542 5.28575 5.37334 5.43367 5.46257 5.53326 5.65031 5.78075 5.80968 5.85666 5.90278 6.02820 6.14070 6.29638 6.36142 6.47148 6.53842 6.60526 6.71414 6.79809 6.99797 7.04775 7.50714 7.97922 8.16134 8.37380 8.81805 9.58658 10.21966 11.08158 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.003507 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.457142 B = 7981.043017 C = 8415.795890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.153 3.847 4 H 0.044 0.956 5 C 0.133 3.867 6 H 0.099 0.901 7 N -0.709 5.709 8 C 0.534 3.466 9 O -0.537 6.537 10 C -0.104 4.104 11 C -0.140 4.140 12 C -0.148 4.148 13 C 0.256 3.744 14 F -0.177 7.177 15 F -0.188 7.188 16 C -0.138 4.138 17 C -0.146 4.146 18 C 0.119 3.881 19 N -0.598 5.598 20 C -0.254 4.254 21 H 0.090 0.910 22 C 0.042 3.958 23 N -0.902 5.902 24 Si 0.888 3.112 25 H -0.286 1.286 26 H -0.302 1.302 27 H -0.268 1.268 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.033 0.967 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.604 -3.167 -16.680 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.047 3.953 4 H 0.061 0.939 5 C 0.028 3.972 6 H 0.117 0.883 7 N -0.359 5.359 8 C 0.318 3.682 9 O -0.414 6.414 10 C -0.108 4.108 11 C -0.197 4.197 12 C -0.186 4.186 13 C 0.220 3.780 14 F -0.158 7.158 15 F -0.169 7.169 16 C -0.176 4.176 17 C -0.186 4.186 18 C -0.006 4.006 19 N -0.324 5.324 20 C -0.382 4.382 21 H 0.107 0.893 22 C -0.160 4.160 23 N -0.542 5.542 24 Si 0.718 3.282 25 H -0.213 1.213 26 H -0.230 1.230 27 H -0.193 1.193 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.144 0.856 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.978 -3.501 -16.085 20.358 hybrid contribution 0.231 1.271 -0.524 1.394 sum 12.210 -2.230 -16.608 20.734 Atomic orbital electron populations 1.21848 0.95486 0.99177 1.03589 1.21896 0.96850 0.97384 1.00138 1.21327 0.90220 0.93453 0.90334 0.93856 1.22141 0.97043 0.98943 0.79037 0.88339 1.46029 1.20011 1.56528 1.13326 1.19839 0.81758 0.79030 0.87525 1.90704 1.46669 1.40146 1.63833 1.21876 0.97948 0.97797 0.93173 1.21784 1.03317 0.91026 1.03546 1.24164 0.96816 1.02482 0.95139 1.21987 0.99149 0.72760 0.84138 1.92995 1.97157 1.57023 1.68589 1.93022 1.92730 1.42979 1.88145 1.24067 0.97095 1.04543 0.91936 1.23158 0.99332 0.98520 0.97561 1.21850 0.86562 0.98379 0.93789 1.44494 1.01613 1.72429 1.13909 1.18711 0.90992 0.96021 1.32444 0.89258 1.25755 0.95421 0.97631 0.97195 1.69780 1.28124 1.25189 1.31143 0.86687 0.79517 0.82762 0.79237 1.21294 1.22953 1.19255 0.94951 0.90666 0.93186 0.93772 0.92152 0.76451 0.90944 0.90248 0.91051 0.86407 0.87768 0.88275 0.85595 0.91235 0.91420 0.93634 0.94908 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.12 37.16 0.34 -2.18 16 2 C -0.12 -2.09 5.41 -26.73 -0.14 -2.23 16 3 C 0.15 2.78 2.93 -66.95 -0.20 2.59 16 4 H 0.04 0.80 7.46 -51.93 -0.39 0.41 16 5 C 0.13 2.11 2.84 -66.10 -0.19 1.93 16 6 H 0.10 1.65 7.27 -51.93 -0.38 1.27 16 7 N -0.71 -9.02 5.06 -52.03 -0.26 -9.28 16 8 C 0.53 6.70 6.91 -10.98 -0.08 6.63 16 9 O -0.54 -8.61 15.56 5.56 0.09 -8.52 16 10 C -0.10 -0.96 1.25 -154.85 -0.19 -1.15 16 11 C -0.14 -1.08 8.95 37.15 0.33 -0.75 16 12 C -0.15 -1.19 7.00 -25.83 -0.18 -1.37 16 13 C 0.26 2.34 3.27 -25.83 -0.08 2.25 16 14 F -0.18 -1.70 15.52 2.25 0.03 -1.66 16 15 F -0.19 -2.01 17.41 2.25 0.04 -1.97 16 16 C -0.14 -1.25 6.77 -25.91 -0.18 -1.42 16 17 C -0.15 -2.52 6.76 -24.70 -0.17 -2.69 16 18 C 0.12 2.45 6.25 -2.65 -0.02 2.43 16 19 N -0.60 -13.32 2.46 -162.71 -0.40 -13.72 16 20 C -0.25 -6.67 9.54 -15.06 -0.14 -6.81 16 21 H 0.09 2.49 5.25 -52.48 -0.28 2.21 16 22 C 0.04 1.15 5.48 -17.43 -0.10 1.06 16 23 N -0.90 -26.57 13.97 55.49 0.78 -25.79 16 24 Si 0.89 21.58 25.17 -169.99 -4.28 17.30 16 25 H -0.29 -6.89 6.81 56.52 0.39 -6.51 16 26 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.27 -6.24 6.99 56.52 0.40 -5.84 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.53 5.51 -51.93 -0.29 1.25 16 30 H 0.05 0.88 7.79 -51.93 -0.40 0.48 16 31 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 4.32 7.35 -40.82 -0.30 4.02 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.56 6.20 -51.93 -0.32 0.24 16 36 H 0.07 0.51 7.11 -51.93 -0.37 0.14 16 37 H 0.12 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.13 1.25 7.45 -51.93 -0.39 0.86 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 43 H 0.05 1.02 4.26 -51.93 -0.22 0.80 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -30.39 353.66 -6.37 -36.76 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.70 Total: 3.28 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.99 Total: -1.72 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.11 Total: -48.79 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.28 Total: 17.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.39 -6.37 -36.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087792084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.651 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds