Wall clock time and date at job start Tue Mar 31 2020 11:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47358 * 2 1 4 4 C 1.50701 * 109.47380 * 120.00007 * 2 1 3 5 5 O 1.21271 * 120.00484 * 242.72143 * 4 2 1 6 6 N 1.34777 * 119.99584 * 62.72054 * 4 2 1 7 7 C 1.48094 * 125.74430 * 185.51588 * 6 4 2 8 8 C 1.53850 * 103.41656 * 204.40688 * 7 6 4 9 9 H 1.08992 * 109.06730 * 73.84132 * 8 7 6 10 10 C 1.49844 * 114.34916 * 195.56401 * 8 7 6 11 11 C 1.51606 * 114.45265 * 66.01240 * 10 8 7 12 12 N 1.44526 * 113.00461 * 35.49176 * 11 10 8 13 13 C 1.36935 * 117.26932 * 150.69086 * 12 11 10 14 14 H 1.07998 * 119.99889 * 214.41450 * 13 12 11 15 15 C 1.38808 * 119.99949 * 34.40940 * 13 12 11 16 16 N 1.31622 * 119.99956 * 355.51913 * 15 13 12 17 17 Si 1.86804 * 120.00314 * 175.51856 * 15 13 12 18 18 H 1.48499 * 109.47053 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47054 * 300.00326 * 17 15 13 20 20 H 1.48504 * 109.46673 * 60.00148 * 17 15 13 21 21 C 1.44410 * 125.46414 * 330.40686 * 12 11 10 22 22 C 1.52988 * 113.17620 * 34.94041 * 21 12 11 23 23 H 1.09007 * 112.80791 * 84.26970 * 22 21 12 24 24 C 1.47469 * 125.74812 * 5.48993 * 6 4 2 25 25 C 1.53001 * 109.47068 * 240.00315 * 2 1 3 26 26 F 1.39899 * 109.47275 * 66.35542 * 25 2 1 27 27 F 1.39894 * 109.47257 * 186.35715 * 25 2 1 28 28 H 1.09008 * 109.46921 * 303.92008 * 1 2 3 29 29 H 1.08997 * 109.47367 * 63.91411 * 1 2 3 30 30 H 1.08995 * 109.47287 * 183.92197 * 1 2 3 31 31 H 1.09000 * 109.47223 * 184.96347 * 3 2 1 32 32 H 1.08999 * 109.47060 * 304.96686 * 3 2 1 33 33 H 1.09007 * 109.46602 * 64.96098 * 3 2 1 34 34 H 1.09001 * 110.63509 * 322.88566 * 7 6 4 35 35 H 1.08996 * 110.63380 * 85.92509 * 7 6 4 36 36 H 1.09004 * 108.46870 * 187.51271 * 10 8 7 37 37 H 1.08993 * 108.47414 * 304.90281 * 10 8 7 38 38 H 1.09005 * 108.95852 * 274.49376 * 11 10 8 39 39 H 1.08991 * 108.68903 * 156.30254 * 11 10 8 40 40 H 0.97001 * 120.00354 * 179.97438 * 16 15 13 41 41 H 1.09003 * 108.74277 * 155.89109 * 21 12 11 42 42 H 1.08998 * 108.74479 * 273.98512 * 21 12 11 43 43 H 1.08996 * 110.03451 * 62.82377 * 24 6 4 44 44 H 1.09000 * 110.04075 * 301.37782 * 24 6 4 45 45 H 1.09000 * 109.47029 * 306.36040 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.6883 -0.1077 2.0533 6 7 1.7526 -2.0156 1.4163 7 6 2.0801 -2.8071 2.6244 8 6 2.1394 -4.2520 2.0994 9 1 3.0554 -4.3844 1.5238 10 6 2.0929 -5.3004 3.1690 11 6 0.7836 -5.3622 3.9307 12 7 -0.3663 -5.0826 3.1010 13 6 -1.5506 -5.6750 3.4497 14 1 -2.2458 -5.9844 2.6834 15 6 -1.8574 -5.8781 4.7882 16 7 -0.9739 -5.5825 5.7180 17 14 -3.5240 -6.5708 5.2698 18 1 -3.6019 -6.6904 6.7480 19 1 -4.5954 -5.6613 4.7901 20 1 -3.6997 -7.9107 4.6542 21 6 -0.3722 -4.2261 1.9383 22 6 0.9309 -4.2869 1.1391 23 1 0.9560 -5.1183 0.4345 24 6 1.0684 -2.8961 0.4512 25 6 2.0400 -0.7212 -1.2493 26 9 1.6967 0.0172 -2.3869 27 9 3.4313 -0.8490 -1.1787 28 1 -0.3633 0.5735 0.8528 29 1 -0.3634 0.4519 -0.9229 30 1 -0.3633 -1.0252 0.0703 31 1 3.1264 1.4438 -0.0889 32 1 1.6059 1.9814 -0.8421 33 1 1.7510 1.9300 0.9312 34 1 3.0458 -2.5062 3.0306 35 1 1.2972 -2.7032 3.3756 36 1 2.2748 -6.2716 2.7087 37 1 2.8949 -5.1038 3.8804 38 1 0.8128 -4.6376 4.7446 39 1 0.6740 -6.3594 4.3566 40 1 -1.1884 -5.7240 6.6534 41 1 -1.1956 -4.5230 1.2887 42 1 -0.5373 -3.1982 2.2613 43 1 1.6624 -2.9862 -0.4582 44 1 0.0819 -2.4967 0.2155 45 1 1.5866 -1.7107 -1.3081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088098506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:19 Heat of formation + Delta-G solvation = -104.052794 kcal Electronic energy + Delta-G solvation = -28865.620660 eV Core-core repulsion = 24747.678004 eV Total energy + Delta-G solvation = -4117.942656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.24097 -47.18676 -40.68486 -38.69859 -35.64267 -35.31443 -32.77789 -31.47044 -30.28258 -28.22809 -27.25889 -26.50114 -25.59135 -24.59772 -22.42945 -21.66602 -21.32073 -19.40780 -18.25247 -17.73485 -17.32058 -17.29348 -16.62003 -16.10734 -15.69607 -15.24379 -14.97778 -14.41262 -14.04326 -13.93825 -13.73263 -13.65909 -13.55793 -13.31181 -13.21801 -13.10450 -12.83769 -12.68099 -12.59730 -12.42194 -12.03379 -12.00295 -11.68382 -11.38894 -11.32602 -11.00521 -10.89503 -10.67457 -10.61005 -10.28775 -10.17846 -9.93335 -9.79906 -9.74520 -9.50681 -8.57136 -8.41601 -6.60905 -5.79247 -3.35955 2.43997 2.86118 3.34265 3.40482 3.40500 3.50116 3.84620 3.97945 4.21261 4.41155 4.59468 4.63178 4.70643 4.81725 4.95617 5.05018 5.19658 5.26522 5.33575 5.37942 5.54016 5.56592 5.56861 5.61286 5.69604 5.79684 5.88962 5.96781 6.00325 6.03551 6.12119 6.17796 6.33761 6.45300 6.54992 6.66182 6.77835 6.86575 7.47544 7.50814 7.77909 7.87821 8.07517 8.49100 9.27941 9.91452 10.28701 11.22334 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.003730 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.439604 B = 7504.958127 C = 7781.260335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.131 4.131 4 C 0.542 3.458 5 O -0.528 6.528 6 N -0.612 5.612 7 C 0.116 3.884 8 C -0.082 4.082 9 H 0.062 0.938 10 C -0.128 4.128 11 C 0.189 3.811 12 N -0.592 5.592 13 C -0.273 4.273 14 H 0.063 0.937 15 C 0.016 3.984 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.290 1.290 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.168 3.832 22 C -0.106 4.106 23 H 0.098 0.902 24 C 0.084 3.916 25 C 0.259 3.741 26 F -0.198 7.198 27 F -0.198 7.198 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.059 0.941 40 H 0.255 0.745 41 H 0.043 0.957 42 H 0.009 0.991 43 H 0.063 0.937 44 H 0.082 0.918 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 7.724 -13.631 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.188 4.188 4 C 0.329 3.671 5 O -0.404 6.404 6 N -0.346 5.346 7 C -0.005 4.005 8 C -0.101 4.101 9 H 0.080 0.920 10 C -0.167 4.167 11 C 0.064 3.936 12 N -0.315 5.315 13 C -0.403 4.403 14 H 0.081 0.919 15 C -0.184 4.184 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.216 1.216 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.041 3.959 22 C -0.126 4.126 23 H 0.116 0.884 24 C -0.038 4.038 25 C 0.206 3.794 26 F -0.179 7.179 27 F -0.179 7.179 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.474 8.153 -13.018 16.306 hybrid contribution -0.790 -0.374 0.188 0.893 sum 4.685 7.779 -12.829 15.718 Atomic orbital electron populations 1.22030 0.90016 1.04439 1.04364 1.21913 0.99833 0.98988 0.92595 1.21669 1.02140 0.91518 1.03477 1.19528 0.79809 0.80565 0.87224 1.90703 1.38602 1.65182 1.45873 1.48703 1.58062 1.08479 1.19323 1.22307 1.01692 0.89326 0.87205 1.21161 0.97434 0.94114 0.97399 0.91958 1.21073 1.01569 0.96812 0.97253 1.20012 0.81738 1.01215 0.90597 1.42730 1.06956 1.52694 1.29130 1.19181 0.96066 1.34351 0.90715 0.91933 1.25326 0.97409 0.99459 0.96176 1.70043 1.33238 1.51319 0.99964 0.86398 0.84414 0.78789 0.77283 1.21570 1.20851 1.20912 1.20321 0.92675 0.93812 0.89071 1.22846 0.98241 0.94141 0.97411 0.88389 1.23025 0.96926 0.92043 0.91836 1.22290 0.77549 0.96477 0.83116 1.92974 1.91857 1.79986 1.53107 1.93009 1.31735 1.96733 1.96453 0.90304 0.90348 0.90423 0.91409 0.91115 0.90457 0.90686 0.89704 0.92875 0.92590 0.94459 0.92245 0.93507 0.93825 0.97357 0.91866 0.90055 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.32 37.16 0.31 -1.13 16 2 C -0.13 -1.49 0.47 -155.66 -0.07 -1.57 16 3 C -0.13 -1.47 7.55 37.16 0.28 -1.19 16 4 C 0.54 8.20 6.17 -10.99 -0.07 8.13 16 5 O -0.53 -9.84 16.16 5.57 0.09 -9.75 16 6 N -0.61 -8.91 3.32 -169.36 -0.56 -9.48 16 7 C 0.12 1.90 5.87 -2.72 -0.02 1.88 16 8 C -0.08 -1.26 2.69 -91.01 -0.25 -1.50 16 9 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 10 C -0.13 -2.24 5.47 -29.00 -0.16 -2.40 16 11 C 0.19 4.29 4.33 -5.80 -0.03 4.27 16 12 N -0.59 -13.80 3.17 -177.28 -0.56 -14.36 16 13 C -0.27 -7.13 9.18 -15.06 -0.14 -7.26 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.02 0.42 5.27 -17.43 -0.09 0.33 16 16 N -0.90 -25.14 10.31 55.49 0.57 -24.56 16 17 Si 0.90 20.98 29.56 -169.99 -5.02 15.95 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.17 3.15 4.94 -5.16 -0.03 3.13 16 22 C -0.11 -1.55 3.98 -88.41 -0.35 -1.90 16 23 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 24 C 0.08 1.01 4.24 -2.03 -0.01 1.00 16 25 C 0.26 2.79 3.83 37.16 0.14 2.93 16 26 F -0.20 -2.12 16.34 2.25 0.04 -2.09 16 27 F -0.20 -2.60 16.53 2.25 0.04 -2.56 16 28 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 30 H 0.08 0.72 4.86 -51.93 -0.25 0.46 16 31 H 0.07 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 33 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 35 H 0.08 1.63 7.07 -51.93 -0.37 1.26 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.96 7.20 -51.93 -0.37 0.58 16 39 H 0.06 1.52 7.01 -51.93 -0.36 1.15 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.04 0.80 7.78 -51.93 -0.40 0.39 16 42 H 0.01 0.18 6.91 -51.93 -0.36 -0.18 16 43 H 0.06 0.62 5.85 -51.93 -0.30 0.31 16 44 H 0.08 0.86 4.93 -51.93 -0.26 0.61 16 45 H 0.12 1.07 4.51 -51.93 -0.23 0.83 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -30.23 341.40 -7.36 -37.59 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.62 Total: -0.61 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.47 Total: 4.72 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.55 Total: -48.40 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.23 -7.36 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088098506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.465 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds