Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.24837 * 2 1 4 4 C 1.54643 * 109.42303 * 240.44120 * 2 1 3 5 5 C 1.50128 * 110.92565 * 201.05687 * 4 2 1 6 6 H 1.08998 * 110.25254 * 338.46174 * 5 4 2 7 7 N 1.46500 * 110.24843 * 216.54691 * 5 4 2 8 8 C 1.34779 * 120.00139 * 156.93404 * 7 5 4 9 9 O 1.21273 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.50696 * 119.99920 * 179.97438 * 8 7 5 11 11 H 1.08997 * 115.56059 * 34.31233 * 10 8 7 12 12 C 1.53002 * 117.49951 * 248.62601 * 10 8 7 13 13 C 1.53004 * 117.49860 * 180.02562 * 10 8 7 14 14 F 1.39897 * 117.49987 * 214.98313 * 13 10 8 15 15 F 1.39900 * 117.49406 * 0.02562 * 13 10 8 16 16 C 1.52528 * 105.53867 * 97.50228 * 5 4 2 17 17 C 1.46233 * 114.28081 * 270.66176 * 16 5 4 18 18 N 1.50172 * 107.53251 * 58.40484 * 17 16 5 19 19 C 1.36938 * 120.53522 * 109.61185 * 18 17 16 20 20 H 1.08006 * 120.00228 * 210.95041 * 19 18 17 21 21 C 1.38813 * 120.00093 * 30.94735 * 19 18 17 22 22 N 1.31619 * 119.99687 * 19.71960 * 21 19 18 23 23 Si 1.86802 * 120.00224 * 199.71854 * 21 19 18 24 24 H 1.48494 * 109.46990 * 94.74993 * 23 21 19 25 25 H 1.48501 * 109.46944 * 214.74814 * 23 21 19 26 26 H 1.48499 * 109.47228 * 334.74829 * 23 21 19 27 27 C 1.43427 * 118.93027 * 289.59787 * 18 17 16 28 28 H 1.09003 * 109.46581 * 300.33822 * 1 2 3 29 29 H 1.08994 * 109.47423 * 60.34250 * 1 2 3 30 30 H 1.09005 * 109.46738 * 180.34072 * 1 2 3 31 31 H 1.08996 * 109.47829 * 179.66134 * 3 2 1 32 32 H 1.09007 * 109.46788 * 299.66501 * 3 2 1 33 33 H 1.09006 * 109.46914 * 59.65639 * 3 2 1 34 34 H 1.09004 * 109.23560 * 80.62435 * 4 2 1 35 35 H 1.08994 * 109.06298 * 321.37427 * 4 2 1 36 36 H 0.97006 * 119.99827 * 336.93742 * 7 5 4 37 37 H 1.08994 * 117.49780 * 359.97438 * 12 10 8 38 38 H 1.08994 * 117.49875 * 145.02628 * 12 10 8 39 39 H 1.08999 * 108.51941 * 31.90637 * 16 5 4 40 40 H 1.08998 * 108.51984 * 149.57503 * 16 5 4 41 41 H 1.09001 * 109.85065 * 177.91389 * 17 16 5 42 42 H 1.09001 * 109.84582 * 298.90331 * 17 16 5 43 43 H 0.97002 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.09005 * 108.15985 * 213.28476 * 27 18 17 45 45 H 1.09008 * 108.15747 * 329.84145 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4444 0.0000 4 6 2.0443 -0.7195 -1.2686 5 6 3.4567 -1.1925 -1.0814 6 1 3.9425 -0.6253 -0.2874 7 7 4.2070 -1.0566 -2.3323 8 6 5.5516 -0.9687 -2.3056 9 8 6.1405 -1.0027 -1.2460 10 6 6.3233 -0.8295 -3.5925 11 1 5.8319 -0.2521 -4.3754 12 6 7.1926 -2.0115 -4.0264 13 6 7.8474 -0.7351 -3.4956 14 9 8.5037 0.0862 -4.4185 15 9 8.4177 -0.7852 -2.2191 16 6 3.3468 -2.6623 -0.6888 17 6 3.2340 -2.8933 0.7508 18 7 2.0175 -2.1568 1.2333 19 6 0.9015 -2.8428 1.6321 20 1 -0.0771 -2.4051 1.5010 21 6 1.0279 -4.1009 2.2050 22 7 2.1795 -4.4769 2.7197 23 14 -0.4363 -5.2602 2.2456 24 1 -0.3786 -6.1715 1.0746 25 1 -0.4005 -6.0592 3.4968 26 1 -1.6936 -4.4715 2.1976 27 6 2.0435 -0.7232 1.2699 28 1 -0.3632 0.5191 0.8870 29 1 -0.3634 0.5085 -0.8930 30 1 -0.3633 -1.0277 0.0061 31 1 3.1243 1.4488 0.0061 32 1 1.6739 1.9551 -0.8930 33 1 1.6640 1.9586 0.8869 34 1 2.0056 -0.0308 -2.1126 35 1 1.4036 -1.5765 -1.4762 36 1 3.7359 -1.0297 -3.1799 37 1 7.2066 -2.8896 -3.3809 38 1 7.2730 -2.2115 -5.0948 39 1 2.4696 -3.0864 -1.1773 40 1 4.2312 -3.1850 -1.0529 41 1 3.1229 -3.9598 0.9469 42 1 4.1215 -2.5136 1.2571 43 1 2.2678 -5.3558 3.1203 44 1 1.4400 -0.3940 2.1158 45 1 3.0711 -0.4066 1.4491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089383483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = -82.089198 kcal Electronic energy + Delta-G solvation = -28173.272753 eV Core-core repulsion = 24056.282510 eV Total energy + Delta-G solvation = -4116.990243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.81623 -47.44490 -40.11736 -38.50466 -35.83443 -34.73612 -34.43030 -31.81870 -30.52151 -27.77634 -26.84081 -25.55143 -25.03955 -23.34958 -22.78224 -21.61142 -20.34456 -20.05677 -18.53760 -17.95210 -17.10181 -16.62341 -16.34349 -16.16380 -15.52345 -15.02321 -14.91043 -14.53381 -14.09185 -14.01519 -13.88109 -13.71430 -13.55076 -13.42393 -13.33565 -12.80741 -12.71084 -12.45455 -11.96913 -11.78014 -11.51976 -11.45358 -11.24872 -11.12774 -11.00956 -10.79429 -10.63337 -10.39618 -10.32357 -10.23455 -10.12625 -9.74711 -9.66170 -9.60757 -9.42559 -8.79422 -8.38466 -6.60773 -5.77961 -3.23284 2.21209 2.67919 2.91588 3.31100 3.36591 3.44755 3.45671 3.96276 4.17234 4.36326 4.49756 4.69500 5.04977 5.09441 5.25477 5.31266 5.34505 5.42945 5.45479 5.47854 5.69012 5.81275 5.91394 6.04275 6.11140 6.18436 6.25021 6.36093 6.38934 6.40558 6.54247 6.66532 6.71055 6.73615 6.88459 7.00393 7.04261 7.07967 7.35659 7.57879 7.69332 7.84520 8.26860 8.51045 9.18065 9.87630 10.44700 11.29147 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.003742 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.418125 B = 7481.265975 C = 8386.884818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.102 4.102 5 C 0.148 3.852 6 H 0.095 0.905 7 N -0.713 5.713 8 C 0.535 3.465 9 O -0.515 6.515 10 C -0.195 4.195 11 H 0.146 0.854 12 C -0.149 4.149 13 C 0.227 3.773 14 F -0.159 7.159 15 F -0.136 7.136 16 C -0.135 4.135 17 C 0.151 3.849 18 N -0.580 5.580 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.005 3.995 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.165 3.835 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.396 0.604 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.102 0.898 42 H 0.025 0.975 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 7.645 -15.936 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.193 4.193 4 C -0.140 4.140 5 C 0.045 3.955 6 H 0.113 0.887 7 N -0.364 5.364 8 C 0.319 3.681 9 O -0.390 6.390 10 C -0.217 4.217 11 H 0.164 0.836 12 C -0.187 4.187 13 C 0.190 3.810 14 F -0.140 7.140 15 F -0.117 7.117 16 C -0.175 4.175 17 C 0.026 3.974 18 N -0.300 5.300 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.538 5.538 23 Si 0.725 3.275 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.035 3.965 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.120 0.880 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.801 7.466 -14.997 17.728 hybrid contribution -0.886 -0.470 -0.549 1.143 sum 4.915 6.996 -15.546 17.742 Atomic orbital electron populations 1.21792 0.94948 1.02299 0.99722 1.21932 0.95632 0.94192 0.97657 1.21828 1.00550 0.96192 1.00715 1.21738 0.94687 1.00240 0.97324 1.20498 0.91729 0.98370 0.84928 0.88750 1.46171 1.05721 1.73834 1.10631 1.19151 0.82832 0.77499 0.88665 1.90829 1.68733 1.48443 1.30989 1.23689 0.92622 1.04396 1.00991 0.83623 1.24274 0.96728 0.92983 1.04733 1.19467 0.88333 0.96388 0.76820 1.93039 1.82580 1.73907 1.64444 1.93147 1.85730 1.96402 1.36382 1.21422 1.00294 0.94103 1.01717 1.20277 0.87841 1.00880 0.88368 1.43916 1.13482 0.98991 1.73656 1.19153 0.86041 0.99528 1.33331 0.91600 1.25028 0.96520 1.00122 0.97716 1.70030 1.24428 1.20071 1.39272 0.86386 0.82702 0.81330 0.77054 1.21606 1.21872 1.20374 1.20397 0.97536 0.85709 0.92826 0.93379 0.94563 0.91549 0.93227 0.93648 0.93007 0.93437 0.90838 0.77059 0.85248 0.85028 0.92312 0.94060 0.88007 0.95686 0.93688 0.94293 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.28 37.16 0.31 -1.77 16 2 C -0.09 -1.47 0.76 -152.64 -0.12 -1.59 16 3 C -0.14 -1.91 8.19 37.16 0.30 -1.61 16 4 C -0.10 -1.55 4.14 -27.30 -0.11 -1.66 16 5 C 0.15 2.40 2.13 -69.60 -0.15 2.25 16 6 H 0.09 1.80 5.23 -51.93 -0.27 1.53 16 7 N -0.71 -9.10 4.98 -55.45 -0.28 -9.37 16 8 C 0.53 7.46 7.54 -10.99 -0.08 7.38 16 9 O -0.52 -9.69 14.83 5.56 0.08 -9.60 16 10 C -0.19 -1.88 6.18 -91.77 -0.57 -2.45 16 11 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.15 -1.19 10.20 -26.75 -0.27 -1.47 16 13 C 0.23 2.57 5.19 -26.75 -0.14 2.43 16 14 F -0.16 -1.75 17.60 2.25 0.04 -1.71 16 15 F -0.14 -2.06 15.71 2.25 0.04 -2.02 16 16 C -0.14 -2.58 4.91 -30.19 -0.15 -2.73 16 17 C 0.15 3.52 5.37 -5.20 -0.03 3.50 16 18 N -0.58 -13.79 2.56 -175.08 -0.45 -14.24 16 19 C -0.25 -6.54 9.29 -15.06 -0.14 -6.68 16 20 H 0.07 1.70 6.70 -52.48 -0.35 1.34 16 21 C 0.01 0.14 4.93 -17.43 -0.09 0.05 16 22 N -0.89 -25.53 11.25 55.49 0.62 -24.90 16 23 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.16 3.39 4.00 -4.67 -0.02 3.37 16 28 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.20 6.65 -51.93 -0.35 0.86 16 31 H 0.05 0.72 7.57 -51.93 -0.39 0.33 16 32 H 0.04 0.57 8.12 -51.93 -0.42 0.14 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.61 7.64 -51.93 -0.40 0.21 16 35 H 0.07 1.23 6.66 -51.93 -0.35 0.88 16 36 H 0.40 3.68 8.49 -40.82 -0.35 3.33 16 37 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.14 6.94 -51.93 -0.36 0.77 16 40 H 0.04 0.77 7.96 -51.93 -0.41 0.36 16 41 H 0.10 2.69 5.64 -51.93 -0.29 2.39 16 42 H 0.02 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.04 0.84 7.85 -51.93 -0.41 0.44 16 45 H 0.03 0.57 6.68 -51.92 -0.35 0.22 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -31.05 356.37 -7.64 -38.69 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.79 Total: 2.62 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.25 Total: -0.98 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.10 Total: -48.52 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.05 -7.64 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089383483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.401 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds