Wall clock time and date at job start Tue Mar 31 2020 11:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.19004 * 2 1 4 4 C 1.47090 * 109.32856 * 119.56784 * 2 1 3 5 5 C 1.52571 * 114.32929 * 183.06495 * 4 2 1 6 6 H 1.08992 * 109.48786 * 34.94727 * 5 4 2 7 7 N 1.46499 * 109.49263 * 155.02288 * 5 4 2 8 8 C 1.34777 * 119.99778 * 205.00333 * 7 5 4 9 9 O 1.21278 * 120.00072 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99670 * 179.97438 * 8 7 5 11 11 H 1.09004 * 115.55271 * 34.33005 * 10 8 7 12 12 C 1.52996 * 117.50197 * 248.61665 * 10 8 7 13 13 C 1.52996 * 60.00334 * 252.51367 * 12 10 8 14 14 F 1.39895 * 117.49975 * 252.50917 * 13 12 10 15 15 F 1.39893 * 117.49821 * 107.48684 * 13 12 10 16 16 C 1.50881 * 109.35637 * 274.98294 * 5 4 2 17 17 C 1.53988 * 110.10633 * 91.87838 * 16 5 4 18 18 N 1.47610 * 112.12089 * 319.45788 * 17 16 5 19 19 C 1.36938 * 118.63994 * 137.86374 * 18 17 16 20 20 H 1.07998 * 119.99587 * 205.53134 * 19 18 17 21 21 C 1.38814 * 120.00152 * 25.52222 * 19 18 17 22 22 N 1.31622 * 119.99792 * 17.91202 * 21 19 18 23 23 Si 1.86801 * 120.00002 * 197.91067 * 21 19 18 24 24 H 1.48502 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47225 * 120.00372 * 23 21 19 26 26 H 1.48500 * 109.47037 * 240.00437 * 23 21 19 27 27 C 1.44575 * 122.71420 * 317.83294 * 18 17 16 28 28 H 1.08996 * 109.47034 * 300.43333 * 1 2 3 29 29 H 1.09004 * 109.46551 * 60.43268 * 1 2 3 30 30 H 1.08994 * 109.47417 * 180.42958 * 1 2 3 31 31 H 1.08995 * 109.47051 * 179.56461 * 3 2 1 32 32 H 1.09003 * 109.46777 * 299.56973 * 3 2 1 33 33 H 1.08998 * 109.46630 * 59.56114 * 3 2 1 34 34 H 1.09001 * 108.51415 * 61.81184 * 4 2 1 35 35 H 1.09003 * 108.51557 * 304.31822 * 4 2 1 36 36 H 0.97001 * 120.00130 * 24.99090 * 7 5 4 37 37 H 1.09006 * 117.49618 * 0.02562 * 12 10 8 38 38 H 1.08999 * 117.50126 * 145.01846 * 12 10 8 39 39 H 1.08996 * 109.36947 * 212.07223 * 16 5 4 40 40 H 1.08999 * 109.36780 * 331.69601 * 16 5 4 41 41 H 1.09000 * 108.95910 * 198.77637 * 17 16 5 42 42 H 1.08998 * 108.87624 * 80.08441 * 17 16 5 43 43 H 0.97000 * 119.99537 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.45345 * 330.71101 * 27 18 17 45 45 H 1.08996 * 109.44859 * 210.79008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0329 1.4450 0.0000 4 6 2.0168 -0.6849 1.2072 5 6 3.5348 -0.6862 1.3602 6 1 3.9399 0.2496 0.9752 7 7 3.8834 -0.8245 2.7764 8 6 5.0666 -0.3628 3.2273 9 8 5.8429 0.1667 2.4606 10 6 5.4248 -0.5046 4.6842 11 1 5.0571 -1.4067 5.1732 12 6 5.4973 0.7739 5.5216 13 6 6.7823 0.0394 5.1341 14 9 7.4563 -0.6588 6.1418 15 9 7.5958 0.6303 4.1614 16 6 4.1147 -1.8428 0.5839 17 6 4.4800 -1.3927 -0.8427 18 7 3.4624 -0.4922 -1.4192 19 6 3.8805 0.6049 -2.1240 20 1 3.2421 1.4726 -2.2009 21 6 5.1248 0.6019 -2.7392 22 7 5.7495 -0.5364 -2.9549 23 14 5.9127 2.2132 -3.2610 24 1 5.0135 3.3411 -2.9080 25 1 7.2118 2.3787 -2.5609 26 1 6.1394 2.2010 -4.7286 27 6 2.0426 -0.7211 -1.2711 28 1 -0.3633 0.5205 0.8860 29 1 -0.3632 0.5071 -0.8939 30 1 -0.3634 -1.0276 0.0077 31 1 3.1228 1.4504 0.0078 32 1 1.6733 1.9548 -0.8939 33 1 1.6606 1.9592 0.8860 34 1 1.6706 -1.7182 1.1823 35 1 1.5815 -0.1988 2.0803 36 1 3.2625 -1.2481 3.3895 37 1 5.2855 1.7175 5.0187 38 1 5.1770 0.7132 6.5616 39 1 5.0101 -2.2046 1.0892 40 1 3.3811 -2.6473 0.5321 41 1 4.5746 -2.2730 -1.4784 42 1 5.4375 -0.8726 -0.8140 43 1 6.6189 -0.5385 -3.3851 44 1 1.8547 -1.7911 -1.1821 45 1 1.5193 -0.3326 -2.1447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089383484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:54 Heat of formation + Delta-G solvation = -79.340186 kcal Electronic energy + Delta-G solvation = -28550.641777 eV Core-core repulsion = 24433.770740 eV Total energy + Delta-G solvation = -4116.871036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.74179 -47.36591 -40.07117 -38.64198 -35.80808 -34.71197 -34.36410 -31.49564 -30.46195 -27.54704 -26.69909 -25.51758 -25.00478 -23.56493 -22.72625 -21.83508 -20.29658 -19.51665 -18.50355 -17.90926 -17.08875 -16.63069 -16.24158 -16.11437 -15.55060 -15.01402 -14.63073 -14.39214 -14.02212 -13.99970 -13.89329 -13.65469 -13.59093 -13.35944 -13.26200 -12.83035 -12.66444 -12.29389 -12.00904 -11.61497 -11.45093 -11.32064 -11.22672 -11.04760 -10.97702 -10.72850 -10.56901 -10.32522 -10.26506 -10.10785 -9.87323 -9.69732 -9.59421 -9.56309 -9.44234 -8.75850 -8.28485 -6.60206 -5.70375 -3.11837 2.30242 2.74742 3.01645 3.37434 3.45342 3.54116 3.54749 4.02478 4.24603 4.43609 4.58679 4.77378 5.06746 5.10981 5.21994 5.32044 5.45218 5.50618 5.52197 5.56976 5.70241 5.94327 5.99362 6.12327 6.16864 6.23205 6.25255 6.34254 6.39084 6.48984 6.58866 6.63883 6.76810 6.81973 6.86606 6.93820 7.08874 7.32950 7.47916 7.68067 7.77867 7.93399 8.38827 8.54842 9.31515 9.99170 10.43015 11.37442 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.004898 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.661352 B = 5715.058568 C = 7066.536497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.096 4.096 5 C 0.149 3.851 6 H 0.111 0.889 7 N -0.719 5.719 8 C 0.532 3.468 9 O -0.506 6.506 10 C -0.194 4.194 11 H 0.145 0.855 12 C -0.150 4.150 13 C 0.227 3.773 14 F -0.160 7.160 15 F -0.135 7.135 16 C -0.148 4.148 17 C 0.181 3.819 18 N -0.587 5.587 19 C -0.258 4.258 20 H 0.070 0.930 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.292 1.292 27 C 0.169 3.831 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.392 0.608 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.252 0.748 44 H 0.031 0.969 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -1.433 17.577 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.188 4.188 4 C -0.134 4.134 5 C 0.046 3.954 6 H 0.129 0.871 7 N -0.369 5.369 8 C 0.315 3.685 9 O -0.380 6.380 10 C -0.216 4.216 11 H 0.163 0.837 12 C -0.188 4.188 13 C 0.190 3.810 14 F -0.140 7.140 15 F -0.115 7.115 16 C -0.188 4.188 17 C 0.056 3.944 18 N -0.308 5.308 19 C -0.388 4.388 20 H 0.088 0.912 21 C -0.192 4.192 22 N -0.545 5.545 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.219 1.219 27 C 0.040 3.960 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.225 0.775 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.341 -1.101 16.891 18.076 hybrid contribution 0.353 0.340 0.161 0.516 sum -5.987 -0.761 17.052 18.089 Atomic orbital electron populations 1.21800 0.95645 1.00697 1.00950 1.20466 0.93908 0.97352 0.97962 1.21927 1.03549 0.94270 0.99024 1.20591 0.94051 1.00421 0.98311 1.20695 0.94889 1.02183 0.77602 0.87102 1.46207 1.18298 1.60867 1.11568 1.19147 0.82607 0.79471 0.87293 1.90886 1.48755 1.41731 1.56592 1.23693 0.99202 1.01719 0.96997 0.83695 1.24266 0.95222 0.96996 1.02359 1.19471 0.81386 0.96992 0.83158 1.93035 1.82413 1.79377 1.59182 1.93157 1.74386 1.83037 1.60963 1.22457 0.99652 0.96757 0.99895 1.20957 0.93218 0.93624 0.86610 1.43658 0.98967 1.28439 1.59701 1.19288 1.01357 0.92594 1.25522 0.91186 1.24979 0.99687 0.96251 0.98250 1.70082 1.15711 1.23650 1.45057 0.86363 0.79673 0.83962 0.77632 1.20275 1.21524 1.21930 1.20707 0.86130 0.95675 0.93472 0.93778 0.92799 0.93422 0.89942 0.93407 0.95524 0.92822 0.93253 0.77451 0.85356 0.85128 0.92668 0.93582 0.95634 0.90374 0.93814 0.95102 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.37 37.16 0.31 -1.46 16 2 C -0.09 -1.51 0.72 -156.36 -0.11 -1.63 16 3 C -0.13 -2.33 6.77 37.16 0.25 -2.08 16 4 C -0.10 -1.40 3.40 -29.79 -0.10 -1.50 16 5 C 0.15 2.52 1.98 -69.21 -0.14 2.39 16 6 H 0.11 2.37 4.73 -51.93 -0.25 2.12 16 7 N -0.72 -9.66 4.93 -55.06 -0.27 -9.93 16 8 C 0.53 8.04 7.43 -10.98 -0.08 7.95 16 9 O -0.51 -10.47 14.81 5.56 0.08 -10.39 16 10 C -0.19 -2.04 6.17 -91.77 -0.57 -2.61 16 11 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 12 C -0.15 -1.28 10.20 -26.73 -0.27 -1.55 16 13 C 0.23 2.80 5.19 -26.73 -0.14 2.66 16 14 F -0.16 -1.91 17.60 2.25 0.04 -1.87 16 15 F -0.14 -2.24 15.71 2.25 0.04 -2.20 16 16 C -0.15 -2.79 5.39 -27.28 -0.15 -2.94 16 17 C 0.18 4.34 4.68 -2.92 -0.01 4.33 16 18 N -0.59 -13.95 1.86 -172.06 -0.32 -14.27 16 19 C -0.26 -6.85 7.64 -15.06 -0.12 -6.96 16 20 H 0.07 1.83 6.44 -52.49 -0.34 1.49 16 21 C 0.01 0.20 4.81 -17.43 -0.08 0.12 16 22 N -0.90 -26.48 11.10 55.49 0.62 -25.86 16 23 Si 0.89 22.37 29.59 -169.99 -5.03 17.34 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.17 3.33 4.70 -4.08 -0.02 3.31 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.75 4.48 -51.93 -0.23 1.52 16 32 H 0.05 0.87 7.50 -51.93 -0.39 0.48 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.74 7.36 -51.93 -0.38 0.35 16 35 H 0.05 0.63 8.01 -51.93 -0.42 0.22 16 36 H 0.39 3.75 8.60 -40.82 -0.35 3.39 16 37 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 1.07 7.85 -51.93 -0.41 0.66 16 40 H 0.05 0.79 7.32 -51.93 -0.38 0.41 16 41 H 0.03 0.66 8.05 -51.93 -0.42 0.25 16 42 H 0.08 2.18 6.33 -51.93 -0.33 1.85 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 45 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -32.09 352.34 -7.58 -39.67 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.81 Total: 2.17 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.23 Total: 0.03 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.02 Total: -50.06 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.08 Total: -4.07 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.09 -7.58 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089383484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.672 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds