Wall clock time and date at job start Tue Mar 31 2020 11:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.19004 * 2 1 4 4 C 1.47090 * 109.32856 * 119.56784 * 2 1 3 5 5 C 1.52571 * 114.32929 * 183.06495 * 4 2 1 6 6 H 1.08992 * 109.48786 * 34.94727 * 5 4 2 7 7 N 1.46499 * 109.49263 * 155.02288 * 5 4 2 8 8 C 1.34777 * 119.99778 * 205.00333 * 7 5 4 9 9 O 1.21278 * 120.00072 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99670 * 179.97438 * 8 7 5 11 11 H 1.09004 * 115.55271 * 34.33005 * 10 8 7 12 12 C 1.52996 * 117.50197 * 248.61665 * 10 8 7 13 13 C 1.52996 * 60.00334 * 252.51367 * 12 10 8 14 14 F 1.39895 * 117.49975 * 252.50917 * 13 12 10 15 15 F 1.39893 * 117.49821 * 107.48684 * 13 12 10 16 16 C 1.50881 * 109.35637 * 274.98294 * 5 4 2 17 17 C 1.53988 * 110.10633 * 91.87838 * 16 5 4 18 18 N 1.47610 * 112.12089 * 319.45788 * 17 16 5 19 19 C 1.36938 * 118.63994 * 137.86374 * 18 17 16 20 20 H 1.07998 * 119.99587 * 205.53134 * 19 18 17 21 21 C 1.38814 * 120.00152 * 25.52222 * 19 18 17 22 22 N 1.31622 * 119.99792 * 17.91202 * 21 19 18 23 23 Si 1.86801 * 120.00002 * 197.91067 * 21 19 18 24 24 H 1.48502 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47225 * 120.00372 * 23 21 19 26 26 H 1.48500 * 109.47037 * 240.00437 * 23 21 19 27 27 C 1.44575 * 122.71420 * 317.83294 * 18 17 16 28 28 H 1.08996 * 109.47034 * 300.43333 * 1 2 3 29 29 H 1.09004 * 109.46551 * 60.43268 * 1 2 3 30 30 H 1.08994 * 109.47417 * 180.42958 * 1 2 3 31 31 H 1.08995 * 109.47051 * 179.56461 * 3 2 1 32 32 H 1.09003 * 109.46777 * 299.56973 * 3 2 1 33 33 H 1.08998 * 109.46630 * 59.56114 * 3 2 1 34 34 H 1.09001 * 108.51415 * 61.81184 * 4 2 1 35 35 H 1.09003 * 108.51557 * 304.31822 * 4 2 1 36 36 H 0.97001 * 120.00130 * 24.99090 * 7 5 4 37 37 H 1.09006 * 117.49618 * 0.02562 * 12 10 8 38 38 H 1.08999 * 117.50126 * 145.01846 * 12 10 8 39 39 H 1.08996 * 109.36947 * 212.07223 * 16 5 4 40 40 H 1.08999 * 109.36780 * 331.69601 * 16 5 4 41 41 H 1.09000 * 108.95910 * 198.77637 * 17 16 5 42 42 H 1.08998 * 108.87624 * 80.08441 * 17 16 5 43 43 H 0.97000 * 119.99537 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.45345 * 330.71101 * 27 18 17 45 45 H 1.08996 * 109.44859 * 210.79008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0329 1.4450 0.0000 4 6 2.0168 -0.6849 1.2072 5 6 3.5348 -0.6862 1.3602 6 1 3.9399 0.2496 0.9752 7 7 3.8834 -0.8245 2.7764 8 6 5.0666 -0.3628 3.2273 9 8 5.8429 0.1667 2.4606 10 6 5.4248 -0.5046 4.6842 11 1 5.0571 -1.4067 5.1732 12 6 5.4973 0.7739 5.5216 13 6 6.7823 0.0394 5.1341 14 9 7.4563 -0.6588 6.1418 15 9 7.5958 0.6303 4.1614 16 6 4.1147 -1.8428 0.5839 17 6 4.4800 -1.3927 -0.8427 18 7 3.4624 -0.4922 -1.4192 19 6 3.8805 0.6049 -2.1240 20 1 3.2421 1.4726 -2.2009 21 6 5.1248 0.6019 -2.7392 22 7 5.7495 -0.5364 -2.9549 23 14 5.9127 2.2132 -3.2610 24 1 5.0135 3.3411 -2.9080 25 1 7.2118 2.3787 -2.5609 26 1 6.1394 2.2010 -4.7286 27 6 2.0426 -0.7211 -1.2711 28 1 -0.3633 0.5205 0.8860 29 1 -0.3632 0.5071 -0.8939 30 1 -0.3634 -1.0276 0.0077 31 1 3.1228 1.4504 0.0078 32 1 1.6733 1.9548 -0.8939 33 1 1.6606 1.9592 0.8860 34 1 1.6706 -1.7182 1.1823 35 1 1.5815 -0.1988 2.0803 36 1 3.2625 -1.2481 3.3895 37 1 5.2855 1.7175 5.0187 38 1 5.1770 0.7132 6.5616 39 1 5.0101 -2.2046 1.0892 40 1 3.3811 -2.6473 0.5321 41 1 4.5746 -2.2730 -1.4784 42 1 5.4375 -0.8726 -0.8140 43 1 6.6189 -0.5385 -3.3851 44 1 1.8547 -1.7911 -1.1821 45 1 1.5193 -0.3326 -2.1447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089383484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:53 Heat of formation + Delta-G solvation = -100.197848 kcal Electronic energy + Delta-G solvation = -28551.546233 eV Core-core repulsion = 24433.770740 eV Total energy + Delta-G solvation = -4117.775493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.69056 -48.37483 -41.37282 -40.01456 -36.79154 -36.26720 -35.91966 -33.27656 -32.16328 -28.94023 -28.18157 -27.20624 -26.13321 -25.19863 -23.63409 -23.29182 -21.47887 -21.13219 -19.71064 -19.10710 -18.59677 -18.08571 -17.42232 -17.18458 -16.85860 -16.50030 -16.20512 -15.76538 -15.57782 -15.28189 -15.14546 -15.02401 -14.74789 -14.57373 -14.52971 -14.37970 -13.80764 -13.47029 -13.45646 -13.14058 -13.03126 -12.75670 -12.73016 -12.57871 -12.42599 -12.30257 -12.20845 -12.00007 -11.77295 -11.45969 -11.38071 -11.25451 -11.19593 -11.02189 -10.80141 -10.40138 -10.05425 -8.60849 -7.83677 -5.24896 1.27052 1.38523 1.44218 1.50464 1.83857 2.08539 2.35331 2.51144 3.23138 3.30952 3.37583 3.54793 3.69025 3.80188 3.91592 4.03661 4.19719 4.36445 4.45076 4.49201 4.58799 4.61979 4.73778 4.78407 4.86114 4.91240 4.92660 5.00134 5.02008 5.11337 5.13885 5.23926 5.32656 5.39937 5.49471 5.55812 5.60836 5.69085 5.74213 5.80720 5.88192 6.43945 6.59054 7.21475 7.30998 7.99842 8.37783 9.21889 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012210 B = 0.004898 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.661352 B = 5715.058568 C = 7066.536497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.092 4.092 5 C 0.156 3.844 6 H 0.065 0.935 7 N -0.699 5.699 8 C 0.524 3.476 9 O -0.573 6.573 10 C -0.182 4.182 11 H 0.190 0.810 12 C -0.109 4.109 13 C 0.185 3.815 14 F -0.160 7.160 15 F -0.172 7.172 16 C -0.133 4.133 17 C 0.195 3.805 18 N -0.596 5.596 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.305 1.305 26 H -0.290 1.290 27 C 0.161 3.839 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.418 0.582 37 H 0.123 0.877 38 H 0.179 0.821 39 H 0.044 0.956 40 H 0.074 0.926 41 H -0.007 1.007 42 H 0.026 0.974 43 H 0.243 0.757 44 H 0.043 0.957 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 -1.705 21.050 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.183 4.183 4 C -0.130 4.130 5 C 0.052 3.948 6 H 0.083 0.917 7 N -0.350 5.350 8 C 0.310 3.690 9 O -0.452 6.452 10 C -0.204 4.204 11 H 0.207 0.793 12 C -0.147 4.147 13 C 0.148 3.852 14 F -0.141 7.141 15 F -0.153 7.153 16 C -0.172 4.172 17 C 0.069 3.931 18 N -0.318 5.318 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.774 3.226 24 H -0.188 1.188 25 H -0.232 1.232 26 H -0.217 1.217 27 C 0.035 3.965 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.256 0.744 37 H 0.141 0.859 38 H 0.197 0.803 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.202 -1.382 20.414 22.863 hybrid contribution 1.484 0.413 -0.909 1.788 sum -8.718 -0.969 19.505 21.387 Atomic orbital electron populations 1.21727 0.92367 1.02291 1.01951 1.20321 0.96314 0.95599 0.96412 1.21835 1.00933 0.95906 0.99649 1.20538 0.91706 1.02080 0.98689 1.20316 0.96529 0.98774 0.79170 0.91728 1.45899 1.18403 1.60269 1.10471 1.19965 0.82024 0.78027 0.88996 1.90880 1.50769 1.44632 1.58881 1.23726 0.97666 1.04873 0.94131 0.79254 1.24475 0.90404 0.95532 1.04267 1.20085 0.81867 0.99623 0.83618 1.93024 1.82624 1.79574 1.58834 1.93074 1.75631 1.83826 1.62750 1.22246 1.00139 0.98317 0.96538 1.20584 0.91588 0.91573 0.89395 1.43775 1.00763 1.27649 1.59569 1.19566 1.00875 0.93383 1.23370 0.90937 1.25614 1.00845 0.98438 0.99918 1.70225 1.15697 1.25214 1.47233 0.85529 0.78292 0.81728 0.77011 1.18776 1.23249 1.21742 1.20964 0.83389 0.96944 0.95217 0.91411 0.93257 0.91577 0.93978 0.94636 0.92936 0.90432 0.89848 0.74371 0.85866 0.80324 0.93679 0.90794 0.98849 0.95537 0.94789 0.93868 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.37 71.98 0.60 -2.14 16 2 C -0.08 -2.46 0.72 -53.38 -0.04 -2.49 16 3 C -0.13 -4.32 6.77 71.98 0.49 -3.83 16 4 C -0.09 -2.31 3.40 28.61 0.10 -2.22 16 5 C 0.16 5.08 1.98 44.16 0.09 5.17 16 6 H 0.06 2.82 4.73 -2.39 -0.01 2.81 16 7 N -0.70 -16.83 4.93 -446.52 -2.20 -19.03 16 8 C 0.52 15.27 7.43 87.66 0.65 15.92 16 9 O -0.57 -24.81 14.81 -3.02 -0.04 -24.86 16 10 C -0.18 -3.28 6.17 -11.54 -0.07 -3.35 16 11 H 0.19 1.67 8.14 -2.39 -0.02 1.65 16 12 C -0.11 -1.46 10.20 30.59 0.31 -1.14 16 13 C 0.19 4.34 5.19 30.59 0.16 4.50 16 14 F -0.16 -3.59 17.60 44.97 0.79 -2.79 16 15 F -0.17 -5.99 15.71 44.97 0.71 -5.28 16 16 C -0.13 -5.00 5.39 30.24 0.16 -4.84 16 17 C 0.19 9.82 4.68 86.50 0.40 10.23 16 18 N -0.60 -29.17 1.86 -698.28 -1.30 -30.46 16 19 C -0.24 -13.30 7.64 84.03 0.64 -12.65 16 20 H 0.07 3.89 6.44 -2.91 -0.02 3.87 16 21 C -0.05 -3.15 4.81 84.86 0.41 -2.74 16 22 N -0.94 -58.68 11.10 21.65 0.24 -58.44 16 23 Si 0.94 48.31 29.59 68.60 2.03 50.34 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.30 -16.23 7.11 99.48 0.71 -15.53 16 26 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 27 C 0.16 6.21 4.70 87.38 0.41 6.62 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.80 4.48 -2.39 -0.01 1.79 16 32 H 0.03 1.26 7.50 -2.39 -0.02 1.24 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.66 7.36 -2.39 -0.02 1.65 16 35 H 0.08 1.61 8.01 -2.39 -0.02 1.60 16 36 H 0.42 5.83 8.60 -92.71 -0.80 5.04 16 37 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.18 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.04 1.77 7.85 -2.39 -0.02 1.75 16 40 H 0.07 2.38 7.32 -2.39 -0.02 2.36 16 41 H -0.01 -0.36 8.05 -2.39 -0.02 -0.38 16 42 H 0.03 1.59 6.33 -2.39 -0.02 1.57 16 43 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 45 H 0.04 1.42 7.95 -2.39 -0.02 1.40 16 Total: -1.00 -80.02 352.34 4.75 -75.27 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.21 Total: 8.23 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.32 Total: 7.04 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -3.26 Total: -107.94 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.04 Total: -24.86 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 1.50 Total: -8.07 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -80.02 4.75 -75.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089383484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.933 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds