Wall clock time and date at job start Tue Mar 31 2020 11:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.26228 * 2 1 4 4 C 1.50882 * 109.36474 * 119.68023 * 2 1 3 5 5 C 1.52567 * 109.35804 * 212.07949 * 4 2 1 6 6 H 1.08997 * 108.51202 * 36.24467 * 5 4 2 7 7 N 1.46498 * 108.38977 * 153.82120 * 5 4 2 8 8 C 1.34775 * 120.00553 * 209.68520 * 7 5 4 9 9 O 1.21283 * 119.99440 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00538 * 180.02562 * 8 7 5 11 11 H 1.08999 * 115.54956 * 325.67636 * 10 8 7 12 12 C 1.53003 * 117.49464 * 111.38172 * 10 8 7 13 13 C 1.52998 * 60.00194 * 107.49210 * 12 10 8 14 14 F 1.39900 * 117.49734 * 252.51253 * 13 12 10 15 15 F 1.39892 * 117.50233 * 107.48394 * 13 12 10 16 16 C 1.47092 * 114.32749 * 274.98936 * 5 4 2 17 17 C 1.54855 * 110.32498 * 62.79839 * 16 5 4 18 18 N 1.44584 * 109.60474 * 288.73779 * 17 16 5 19 19 C 1.36936 * 118.64174 * 270.70485 * 18 17 16 20 20 H 1.07993 * 119.99707 * 144.92711 * 19 18 17 21 21 C 1.38812 * 119.99766 * 324.92882 * 19 18 17 22 22 N 1.31618 * 120.00140 * 329.11599 * 21 19 18 23 23 Si 1.86802 * 119.99720 * 149.11959 * 21 19 18 24 24 H 1.48498 * 109.47193 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46981 * 59.99948 * 23 21 19 26 26 H 1.48499 * 109.47261 * 299.99861 * 23 21 19 27 27 C 1.47602 * 122.70966 * 90.97724 * 18 17 16 28 28 H 1.08995 * 109.47115 * 300.32152 * 1 2 3 29 29 H 1.09001 * 109.46732 * 60.32119 * 1 2 3 30 30 H 1.09004 * 109.46979 * 180.31756 * 1 2 3 31 31 H 1.08997 * 109.47090 * 185.76209 * 3 2 1 32 32 H 1.09004 * 109.46755 * 305.76434 * 3 2 1 33 33 H 1.09000 * 109.46877 * 65.75826 * 3 2 1 34 34 H 1.08996 * 109.49144 * 92.11579 * 4 2 1 35 35 H 1.09000 * 109.50830 * 332.05428 * 4 2 1 36 36 H 0.97005 * 119.99878 * 29.69667 * 7 5 4 37 37 H 1.09011 * 117.49707 * 214.98116 * 12 10 8 38 38 H 1.08999 * 117.50343 * 359.97438 * 12 10 8 39 39 H 1.09006 * 109.32630 * 302.54325 * 16 5 4 40 40 H 1.08999 * 109.19096 * 182.97954 * 16 5 4 41 41 H 1.09003 * 109.45614 * 168.69416 * 17 16 5 42 42 H 1.09001 * 109.44701 * 48.77335 * 17 16 5 43 43 H 0.96997 * 119.99953 * 352.50134 * 22 21 19 44 44 H 1.09003 * 108.94659 * 78.30825 * 27 18 17 45 45 H 1.09008 * 108.94415 * 196.92676 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4444 0.0000 4 6 2.0303 -0.7048 1.2367 5 6 3.3487 -0.0767 1.6784 6 1 3.3016 0.9957 1.4891 7 7 3.5004 -0.2866 3.1203 8 6 4.1865 0.6049 3.8626 9 8 4.6779 1.5812 3.3369 10 6 4.3432 0.3887 5.3458 11 1 3.4959 -0.0822 5.8443 12 6 5.7431 0.0586 5.8675 13 6 5.1330 1.4363 6.1330 14 9 5.6543 2.5218 5.4207 15 9 4.7126 1.7163 7.4375 16 6 4.5357 -0.6191 0.9999 17 6 4.4646 -0.3320 -0.5201 18 7 3.4428 -1.1586 -1.1227 19 6 3.7905 -2.4003 -1.5837 20 1 3.0915 -3.2199 -1.5069 21 6 5.0413 -2.6054 -2.1496 22 7 5.6403 -1.6269 -2.7945 23 14 5.8743 -4.2703 -1.9958 24 1 7.1911 -4.2302 -2.6812 25 1 5.0212 -5.3106 -2.6244 26 1 6.0727 -4.5939 -0.5601 27 6 2.0418 -0.7170 -1.2667 28 1 -0.3633 0.5188 0.8870 29 1 -0.3633 0.5089 -0.8929 30 1 -0.3633 -1.0277 0.0057 31 1 3.1198 1.4500 -0.1032 32 1 1.5876 1.9855 -0.8339 33 1 1.7563 1.9265 0.9371 34 1 2.1867 -1.7606 1.0154 35 1 1.2948 -0.6056 2.0349 36 1 3.1072 -1.0673 3.5408 37 1 5.8171 -0.6298 6.7096 38 1 6.5507 -0.0026 5.1381 39 1 4.5831 -1.6960 1.1618 40 1 5.4295 -0.1524 1.4139 41 1 5.4286 -0.5555 -0.9773 42 1 4.2224 0.7187 -0.6800 43 1 5.1658 -0.7991 -2.9690 44 1 1.9706 -0.0371 -2.1157 45 1 1.4144 -1.5874 -1.4589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089383485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:58 Heat of formation + Delta-G solvation = -72.597717 kcal Electronic energy + Delta-G solvation = -28312.624280 eV Core-core repulsion = 24196.045619 eV Total energy + Delta-G solvation = -4116.578661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.83122 -47.46142 -40.34550 -38.81697 -35.89145 -34.91314 -34.63353 -31.53682 -30.48252 -27.78696 -27.06287 -25.21922 -25.16025 -23.88145 -22.80575 -21.78892 -20.40536 -19.66243 -18.58127 -17.97881 -17.29022 -17.03445 -16.52767 -16.21013 -15.69177 -15.04962 -14.91791 -14.41055 -14.10155 -14.08204 -13.82156 -13.78881 -13.67639 -13.48263 -13.19912 -12.97142 -12.84900 -12.68969 -12.36054 -12.02968 -11.64755 -11.56566 -11.46089 -11.01046 -10.79390 -10.72394 -10.56806 -10.40939 -10.40153 -10.15902 -10.07289 -9.95397 -9.67455 -9.64554 -9.18844 -8.79149 -8.31888 -6.80651 -6.03035 -3.33147 2.20356 2.67356 2.90869 3.31152 3.47495 3.50982 3.69026 3.96222 4.17371 4.35349 4.57740 4.69309 4.99823 5.08357 5.11361 5.19634 5.26610 5.31602 5.44874 5.47246 5.59006 5.76003 5.78639 5.89537 5.97388 6.04638 6.13717 6.22368 6.26973 6.29789 6.42972 6.51808 6.56256 6.64036 6.78915 6.80532 6.86076 6.92741 7.11451 7.37642 7.57672 8.10345 8.24901 8.59345 9.17548 9.84599 10.25979 11.13001 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.004118 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.183079 B = 6797.203624 C = 7986.461925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.158 4.158 4 C -0.101 4.101 5 C 0.143 3.857 6 H 0.095 0.905 7 N -0.717 5.717 8 C 0.535 3.465 9 O -0.522 6.522 10 C -0.195 4.195 11 H 0.146 0.854 12 C -0.148 4.148 13 C 0.227 3.773 14 F -0.137 7.137 15 F -0.159 7.159 16 C -0.148 4.148 17 C 0.144 3.856 18 N -0.588 5.588 19 C -0.359 4.359 20 H 0.049 0.951 21 C -0.015 4.015 22 N -0.897 5.897 23 Si 1.053 2.947 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.158 3.842 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.396 0.604 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.269 0.731 44 H 0.013 0.987 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 2.358 16.361 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 C -0.214 4.214 4 C -0.139 4.139 5 C 0.041 3.959 6 H 0.113 0.887 7 N -0.367 5.367 8 C 0.319 3.681 9 O -0.398 6.398 10 C -0.217 4.217 11 H 0.164 0.836 12 C -0.186 4.186 13 C 0.189 3.811 14 F -0.117 7.117 15 F -0.140 7.140 16 C -0.189 4.189 17 C 0.016 3.984 18 N -0.310 5.310 19 C -0.488 4.488 20 H 0.067 0.933 21 C -0.219 4.219 22 N -0.535 5.535 23 Si 0.882 3.118 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.033 3.967 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.229 0.771 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.031 0.969 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.100 2.300 15.626 16.318 hybrid contribution -1.800 0.459 0.765 2.009 sum -5.900 2.759 16.392 17.638 Atomic orbital electron populations 1.21843 0.94934 1.01317 1.01062 1.20725 0.94699 0.95608 0.96877 1.22401 1.02998 0.95610 1.00407 1.21275 0.94540 1.01633 0.96411 1.20453 0.95850 1.02747 0.76885 0.88719 1.46392 1.54730 1.25603 1.09987 1.19160 0.79276 0.83454 0.86215 1.90798 1.47203 1.28981 1.72814 1.23695 0.99473 1.02746 0.95789 0.83636 1.24282 0.95501 0.94644 1.04212 1.19479 1.01597 0.82603 0.77372 1.93138 1.86331 1.55884 1.76392 1.93037 1.90425 1.94839 1.35667 1.21736 0.95770 1.01470 0.99941 1.20983 0.95663 0.92647 0.89114 1.43647 1.03282 1.16817 1.67214 1.19853 1.03720 0.86207 1.39045 0.93320 1.25756 0.97425 1.04422 0.94313 1.70757 1.42031 1.07507 1.33203 0.83717 0.76484 0.75462 0.76087 1.21169 1.21978 1.22105 1.21358 0.87083 0.96124 0.92149 0.93275 0.92866 0.92821 0.90324 0.93297 0.93481 0.90301 0.92724 0.77096 0.84990 0.85241 0.91742 0.93105 0.90250 0.94477 0.92006 0.96879 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.15 37.16 0.30 -1.47 16 2 C -0.08 -1.23 0.75 -154.89 -0.12 -1.35 16 3 C -0.16 -2.51 6.78 37.16 0.25 -2.26 16 4 C -0.10 -1.55 4.38 -28.02 -0.12 -1.67 16 5 C 0.14 2.33 1.79 -70.99 -0.13 2.20 16 6 H 0.10 1.69 3.94 -51.93 -0.20 1.49 16 7 N -0.72 -9.52 4.88 -56.82 -0.28 -9.80 16 8 C 0.54 7.57 7.46 -10.99 -0.08 7.48 16 9 O -0.52 -9.65 14.64 5.55 0.08 -9.57 16 10 C -0.19 -1.95 6.17 -91.77 -0.57 -2.52 16 11 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.15 -1.25 10.20 -26.73 -0.27 -1.52 16 13 C 0.23 2.59 5.19 -26.73 -0.14 2.45 16 14 F -0.14 -2.06 15.71 2.25 0.04 -2.03 16 15 F -0.16 -1.77 17.60 2.25 0.04 -1.73 16 16 C -0.15 -2.91 5.20 -28.59 -0.15 -3.05 16 17 C 0.14 3.24 4.88 -4.09 -0.02 3.22 16 18 N -0.59 -13.73 2.01 -171.88 -0.35 -14.07 16 19 C -0.36 -9.51 9.15 -15.06 -0.14 -9.64 16 20 H 0.05 1.32 7.98 -52.49 -0.42 0.90 16 21 C -0.02 -0.41 4.65 -17.43 -0.08 -0.50 16 22 N -0.90 -26.09 12.11 55.49 0.67 -25.42 16 23 Si 1.05 24.50 30.02 -169.99 -5.10 19.40 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 27 C 0.16 3.17 5.16 -2.76 -0.01 3.15 16 28 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.41 3.31 -51.93 -0.17 1.24 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 34 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 35 H 0.05 0.72 7.64 -51.93 -0.40 0.32 16 36 H 0.40 4.05 8.61 -40.82 -0.35 3.70 16 37 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 41 H 0.08 2.08 5.39 -51.93 -0.28 1.80 16 42 H 0.04 0.81 5.12 -51.93 -0.27 0.55 16 43 H 0.27 7.96 7.64 -40.82 -0.31 7.65 16 44 H 0.01 0.28 7.99 -51.93 -0.41 -0.14 16 45 H 0.05 1.01 7.71 -51.92 -0.40 0.61 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -31.16 351.69 -7.46 -38.62 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.59 Total: 4.75 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.27 Total: -5.46 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.05 Total: -49.29 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.10 Total: 19.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.16 -7.46 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089383485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.973 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds