Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.26228 * 2 1 4 4 C 1.50882 * 109.36474 * 119.68023 * 2 1 3 5 5 C 1.52567 * 109.35804 * 212.07949 * 4 2 1 6 6 H 1.08997 * 108.51202 * 36.24467 * 5 4 2 7 7 N 1.46498 * 108.38977 * 153.82120 * 5 4 2 8 8 C 1.34775 * 120.00553 * 209.68520 * 7 5 4 9 9 O 1.21283 * 119.99440 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00538 * 180.02562 * 8 7 5 11 11 H 1.08999 * 115.54956 * 325.67636 * 10 8 7 12 12 C 1.53003 * 117.49464 * 111.38172 * 10 8 7 13 13 C 1.52998 * 60.00194 * 107.49210 * 12 10 8 14 14 F 1.39900 * 117.49734 * 252.51253 * 13 12 10 15 15 F 1.39892 * 117.50233 * 107.48394 * 13 12 10 16 16 C 1.47092 * 114.32749 * 274.98936 * 5 4 2 17 17 C 1.54855 * 110.32498 * 62.79839 * 16 5 4 18 18 N 1.44584 * 109.60474 * 288.73779 * 17 16 5 19 19 C 1.36936 * 118.64174 * 270.70485 * 18 17 16 20 20 H 1.07993 * 119.99707 * 144.92711 * 19 18 17 21 21 C 1.38812 * 119.99766 * 324.92882 * 19 18 17 22 22 N 1.31618 * 120.00140 * 329.11599 * 21 19 18 23 23 Si 1.86802 * 119.99720 * 149.11959 * 21 19 18 24 24 H 1.48498 * 109.47193 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46981 * 59.99948 * 23 21 19 26 26 H 1.48499 * 109.47261 * 299.99861 * 23 21 19 27 27 C 1.47602 * 122.70966 * 90.97724 * 18 17 16 28 28 H 1.08995 * 109.47115 * 300.32152 * 1 2 3 29 29 H 1.09001 * 109.46732 * 60.32119 * 1 2 3 30 30 H 1.09004 * 109.46979 * 180.31756 * 1 2 3 31 31 H 1.08997 * 109.47090 * 185.76209 * 3 2 1 32 32 H 1.09004 * 109.46755 * 305.76434 * 3 2 1 33 33 H 1.09000 * 109.46877 * 65.75826 * 3 2 1 34 34 H 1.08996 * 109.49144 * 92.11579 * 4 2 1 35 35 H 1.09000 * 109.50830 * 332.05428 * 4 2 1 36 36 H 0.97005 * 119.99878 * 29.69667 * 7 5 4 37 37 H 1.09011 * 117.49707 * 214.98116 * 12 10 8 38 38 H 1.08999 * 117.50343 * 359.97438 * 12 10 8 39 39 H 1.09006 * 109.32630 * 302.54325 * 16 5 4 40 40 H 1.08999 * 109.19096 * 182.97954 * 16 5 4 41 41 H 1.09003 * 109.45614 * 168.69416 * 17 16 5 42 42 H 1.09001 * 109.44701 * 48.77335 * 17 16 5 43 43 H 0.96997 * 119.99953 * 352.50134 * 22 21 19 44 44 H 1.09003 * 108.94659 * 78.30825 * 27 18 17 45 45 H 1.09008 * 108.94415 * 196.92676 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4444 0.0000 4 6 2.0303 -0.7048 1.2367 5 6 3.3487 -0.0767 1.6784 6 1 3.3016 0.9957 1.4891 7 7 3.5004 -0.2866 3.1203 8 6 4.1865 0.6049 3.8626 9 8 4.6779 1.5812 3.3369 10 6 4.3432 0.3887 5.3458 11 1 3.4959 -0.0822 5.8443 12 6 5.7431 0.0586 5.8675 13 6 5.1330 1.4363 6.1330 14 9 5.6543 2.5218 5.4207 15 9 4.7126 1.7163 7.4375 16 6 4.5357 -0.6191 0.9999 17 6 4.4646 -0.3320 -0.5201 18 7 3.4428 -1.1586 -1.1227 19 6 3.7905 -2.4003 -1.5837 20 1 3.0915 -3.2199 -1.5069 21 6 5.0413 -2.6054 -2.1496 22 7 5.6403 -1.6269 -2.7945 23 14 5.8743 -4.2703 -1.9958 24 1 7.1911 -4.2302 -2.6812 25 1 5.0212 -5.3106 -2.6244 26 1 6.0727 -4.5939 -0.5601 27 6 2.0418 -0.7170 -1.2667 28 1 -0.3633 0.5188 0.8870 29 1 -0.3633 0.5089 -0.8929 30 1 -0.3633 -1.0277 0.0057 31 1 3.1198 1.4500 -0.1032 32 1 1.5876 1.9855 -0.8339 33 1 1.7563 1.9265 0.9371 34 1 2.1867 -1.7606 1.0154 35 1 1.2948 -0.6056 2.0349 36 1 3.1072 -1.0673 3.5408 37 1 5.8171 -0.6298 6.7096 38 1 6.5507 -0.0026 5.1381 39 1 4.5831 -1.6960 1.1618 40 1 5.4295 -0.1524 1.4139 41 1 5.4286 -0.5555 -0.9773 42 1 4.2224 0.7187 -0.6800 43 1 5.1658 -0.7991 -2.9690 44 1 1.9706 -0.0371 -2.1157 45 1 1.4144 -1.5874 -1.4589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089383485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = -91.473138 kcal Electronic energy + Delta-G solvation = -28313.442780 eV Core-core repulsion = 24196.045619 eV Total energy + Delta-G solvation = -4117.397161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.70694 -48.38460 -41.63244 -40.12585 -36.90946 -36.51852 -35.98229 -33.22159 -32.20543 -29.20185 -28.28394 -27.02602 -26.34091 -25.39645 -23.64135 -23.25141 -21.57030 -21.26944 -19.66488 -19.23007 -19.10551 -18.06973 -17.72198 -17.18388 -16.81049 -16.49093 -16.14224 -15.83448 -15.67811 -15.47193 -15.05957 -14.99415 -14.81306 -14.72158 -14.55000 -14.42207 -14.17730 -13.80934 -13.50709 -13.48926 -12.97444 -12.87989 -12.66512 -12.56397 -12.35173 -12.30681 -12.00829 -11.95844 -11.79864 -11.73444 -11.61739 -11.23126 -11.19263 -10.86520 -10.80801 -10.36074 -10.10070 -8.83484 -8.11939 -5.44167 1.22886 1.58503 1.64397 1.77754 1.83592 2.04673 2.34899 2.67086 3.18373 3.20754 3.33409 3.52446 3.57085 3.66658 3.86324 3.90054 4.01881 4.14727 4.30674 4.39144 4.47940 4.57325 4.61095 4.65383 4.73521 4.75294 4.79532 4.82820 4.89800 4.91213 5.00969 5.08988 5.12722 5.22765 5.32296 5.34404 5.45879 5.47094 5.58092 5.62188 5.97418 6.41017 6.51483 7.17448 7.19662 7.85650 8.24130 8.96548 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.004118 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.183079 B = 6797.203624 C = 7986.461925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.152 4.152 4 C -0.091 4.091 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.705 5.705 8 C 0.530 3.470 9 O -0.572 6.572 10 C -0.185 4.185 11 H 0.188 0.812 12 C -0.120 4.120 13 C 0.197 3.803 14 F -0.167 7.167 15 F -0.159 7.159 16 C -0.128 4.128 17 C 0.147 3.853 18 N -0.597 5.597 19 C -0.358 4.358 20 H 0.044 0.956 21 C -0.065 4.065 22 N -0.925 5.925 23 Si 1.100 2.900 24 H -0.296 1.296 25 H -0.275 1.275 26 H -0.279 1.279 27 C 0.157 3.843 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.415 0.585 37 H 0.175 0.825 38 H 0.121 0.879 39 H 0.050 0.950 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.252 0.748 44 H -0.002 1.002 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 0.927 19.139 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.208 4.208 4 C -0.129 4.129 5 C 0.046 3.954 6 H 0.101 0.899 7 N -0.355 5.355 8 C 0.316 3.684 9 O -0.451 6.451 10 C -0.206 4.206 11 H 0.206 0.794 12 C -0.158 4.158 13 C 0.160 3.840 14 F -0.148 7.148 15 F -0.139 7.139 16 C -0.169 4.169 17 C 0.019 3.981 18 N -0.319 5.319 19 C -0.488 4.488 20 H 0.062 0.938 21 C -0.264 4.264 22 N -0.566 5.566 23 Si 0.925 3.075 24 H -0.223 1.223 25 H -0.201 1.201 26 H -0.205 1.205 27 C 0.032 3.968 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.192 0.808 38 H 0.139 0.861 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.033 0.845 18.443 19.424 hybrid contribution -1.234 0.957 -0.131 1.567 sum -7.268 1.802 18.312 19.784 Atomic orbital electron populations 1.21793 0.92049 1.02231 1.02448 1.20661 0.96862 0.94886 0.94834 1.22309 1.01151 0.95865 1.01499 1.21203 0.94577 1.00039 0.97118 1.20099 0.94937 1.01772 0.78575 0.89893 1.46137 1.54554 1.26299 1.08550 1.19856 0.78026 0.82516 0.88009 1.90790 1.49024 1.31058 1.74217 1.23736 1.02005 1.02293 0.92586 0.79444 1.24473 0.93978 0.92666 1.04678 1.19917 1.03811 0.82814 0.77486 1.93071 1.86912 1.57596 1.77210 1.93032 1.90564 1.94901 1.35404 1.21473 0.97196 1.00402 0.97871 1.20838 0.93615 0.92715 0.90885 1.43777 1.04678 1.16173 1.67265 1.20045 1.03619 0.87339 1.37758 0.93817 1.26992 0.98628 1.06670 0.94065 1.70883 1.42226 1.07655 1.35800 0.83072 0.75252 0.72389 0.76749 1.22277 1.20084 1.20543 1.21472 0.85165 0.95980 0.94169 0.90896 0.92540 0.92170 0.93019 0.92737 0.91849 0.92109 0.89115 0.74813 0.80781 0.86113 0.93109 0.94313 0.94324 0.94181 0.93879 0.98431 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.15 71.98 0.59 -2.37 16 2 C -0.07 -2.14 0.75 -52.43 -0.04 -2.18 16 3 C -0.15 -4.66 6.78 71.98 0.49 -4.17 16 4 C -0.09 -2.60 4.38 29.76 0.13 -2.47 16 5 C 0.15 4.72 1.79 43.01 0.08 4.80 16 6 H 0.08 2.92 3.94 -2.39 -0.01 2.91 16 7 N -0.70 -16.98 4.88 -452.06 -2.21 -19.19 16 8 C 0.53 14.04 7.46 87.66 0.65 14.69 16 9 O -0.57 -21.14 14.64 -3.04 -0.04 -21.19 16 10 C -0.18 -3.09 6.17 -11.54 -0.07 -3.16 16 11 H 0.19 1.52 8.14 -2.39 -0.02 1.50 16 12 C -0.12 -1.63 10.20 30.59 0.31 -1.32 16 13 C 0.20 4.14 5.19 30.60 0.16 4.30 16 14 F -0.17 -5.07 15.71 44.97 0.71 -4.36 16 15 F -0.16 -3.18 17.60 44.97 0.79 -2.39 16 16 C -0.13 -5.12 5.20 29.39 0.15 -4.97 16 17 C 0.15 6.93 4.88 87.37 0.43 7.35 16 18 N -0.60 -28.57 2.01 -697.69 -1.40 -29.98 16 19 C -0.36 -19.28 9.15 84.03 0.77 -18.51 16 20 H 0.04 2.38 7.98 -2.91 -0.02 2.35 16 21 C -0.07 -3.63 4.65 84.86 0.39 -3.24 16 22 N -0.93 -56.06 12.11 21.65 0.26 -55.80 16 23 Si 1.10 49.97 30.02 68.60 2.06 52.03 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.16 6.30 5.16 86.61 0.45 6.74 16 28 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.88 3.31 -2.39 -0.01 1.87 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.74 7.66 -2.39 -0.02 1.73 16 34 H 0.06 2.00 7.49 -2.39 -0.02 1.98 16 35 H 0.09 1.97 7.64 -2.39 -0.02 1.95 16 36 H 0.41 6.90 8.61 -92.70 -0.80 6.10 16 37 H 0.17 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.04 1.61 7.94 -2.39 -0.02 1.59 16 41 H 0.04 2.16 5.39 -2.39 -0.01 2.14 16 42 H 0.04 1.85 5.12 -2.39 -0.01 1.84 16 43 H 0.25 15.72 7.64 -92.71 -0.71 15.01 16 44 H 0.00 -0.10 7.99 -2.39 -0.02 -0.12 16 45 H 0.04 1.83 7.71 -2.38 -0.02 1.81 16 Total: -1.00 -72.52 351.69 4.93 -67.59 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.28 Total: 17.78 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 4.48 Total: -4.49 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.35 Total: -104.96 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.04 Total: -21.19 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.50 Total: -6.75 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.06 Total: 52.03 kcal Total: -72.52 4.93 -67.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089383485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.882 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds