Wall clock time and date at job start Tue Mar 31 2020 11:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.49655 * 2 1 4 4 C 1.53035 * 109.46878 * 239.92394 * 2 1 3 5 5 C 1.53042 * 109.54186 * 301.36199 * 4 2 1 6 6 C 1.53200 * 109.33694 * 298.68900 * 5 4 2 7 7 H 1.09001 * 109.57951 * 294.82508 * 6 5 4 8 8 C 1.53005 * 109.58541 * 174.54721 * 6 5 4 9 9 N 1.46497 * 109.47036 * 179.97438 * 8 6 5 10 10 C 1.34774 * 119.99947 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00276 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99830 * 179.97438 * 10 9 8 13 13 H 1.09007 * 115.55065 * 34.42038 * 12 10 9 14 14 C 1.53004 * 117.49678 * 180.08150 * 12 10 9 15 15 C 1.53002 * 117.50132 * 248.74371 * 12 10 9 16 16 F 1.39896 * 117.49463 * 0.02562 * 15 12 10 17 17 F 1.39895 * 117.49729 * 145.02237 * 15 12 10 18 18 N 1.46921 * 108.77770 * 54.61322 * 6 5 4 19 19 C 1.36938 * 120.62848 * 126.37096 * 18 6 5 20 20 H 1.07995 * 120.00293 * 328.35930 * 19 18 6 21 21 C 1.38816 * 119.99813 * 148.36544 * 19 18 6 22 22 N 1.31622 * 119.99911 * 345.34596 * 21 19 18 23 23 Si 1.86798 * 119.99903 * 165.35364 * 21 19 18 24 24 H 1.48494 * 109.47268 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47274 * 119.99602 * 23 21 19 26 26 H 1.48503 * 109.46859 * 239.99788 * 23 21 19 27 27 C 1.46925 * 118.73978 * 306.39277 * 18 6 5 28 28 H 1.09000 * 109.46947 * 299.92970 * 1 2 3 29 29 H 1.08995 * 109.47555 * 59.93076 * 1 2 3 30 30 H 1.09008 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47293 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47519 * 300.06682 * 3 2 1 33 33 H 1.09002 * 109.47260 * 60.06986 * 3 2 1 34 34 H 1.09002 * 109.43334 * 181.35806 * 4 2 1 35 35 H 1.08996 * 109.48915 * 61.39732 * 4 2 1 36 36 H 1.08994 * 109.50231 * 178.71679 * 5 4 2 37 37 H 1.09000 * 109.49392 * 58.64898 * 5 4 2 38 38 H 1.09003 * 109.46681 * 299.94233 * 8 6 5 39 39 H 1.08994 * 109.47296 * 59.93769 * 8 6 5 40 40 H 0.97004 * 119.99862 * 359.97438 * 9 8 6 41 41 H 1.09000 * 117.50009 * 214.97847 * 14 12 10 42 42 H 1.08998 * 117.49914 * 359.97438 * 14 12 10 43 43 H 0.96996 * 119.99711 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58941 * 173.39562 * 27 18 6 45 45 H 1.08999 * 109.58747 * 293.81752 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0400 -0.7231 -1.2486 5 6 1.5029 -2.1561 -1.2656 6 6 2.0140 -2.9040 -0.0301 7 1 3.0979 -3.0043 -0.0862 8 6 1.3730 -4.2920 0.0308 9 7 1.8638 -5.0051 1.2126 10 6 1.4330 -6.2555 1.4723 11 8 0.6388 -6.7901 0.7279 12 6 1.9384 -6.9893 2.6878 13 1 2.1324 -6.3702 3.5638 14 6 1.4131 -8.4063 2.9265 15 6 2.8542 -8.1928 2.4564 16 9 3.1589 -8.5276 1.1326 17 9 3.8763 -8.4148 3.3854 18 7 1.6516 -2.1379 1.1701 19 6 0.9632 -2.7307 2.1947 20 1 0.2589 -3.5222 1.9854 21 6 1.1706 -2.3142 3.5026 22 7 2.2148 -1.5693 3.7983 23 14 -0.0320 -2.8109 4.8428 24 1 -1.1129 -3.6421 4.2547 25 1 0.6824 -3.5919 5.8843 26 1 -0.6219 -1.5932 5.4547 27 6 2.0413 -0.7235 1.2497 28 1 -0.3633 0.5127 0.8906 29 1 -0.3634 0.5149 -0.8893 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1306 1.4418 -0.0005 32 1 1.6765 1.9566 -0.8893 33 1 1.6785 1.9559 0.8906 34 1 3.1298 -0.7439 -1.2359 35 1 1.6974 -0.1964 -2.1392 36 1 1.8479 -2.6633 -2.1665 37 1 0.4132 -2.1362 -1.2538 38 1 0.2896 -4.1894 0.0928 39 1 1.6340 -4.8524 -0.8668 40 1 2.4993 -4.5776 1.8078 41 1 1.2621 -8.7198 3.9595 42 1 0.7018 -8.8077 2.2047 43 1 2.3598 -1.2786 4.7122 44 1 1.6008 -0.2726 2.1389 45 1 3.1275 -0.6460 1.2982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089639830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:47 Heat of formation + Delta-G solvation = -91.850051 kcal Electronic energy + Delta-G solvation = -28412.654654 eV Core-core repulsion = 24295.241149 eV Total energy + Delta-G solvation = -4117.413505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -48.66163 -47.33332 -39.55268 -38.56061 -35.71657 -34.89228 -33.25993 -32.18770 -30.05217 -27.79313 -26.63676 -25.53313 -24.75362 -22.76825 -22.52391 -22.19372 -20.18481 -19.72015 -18.12046 -17.94288 -17.20578 -16.40207 -15.97958 -15.86230 -15.61997 -15.07423 -14.32058 -14.11973 -13.99629 -13.89778 -13.67000 -13.64592 -13.47824 -13.44059 -13.31488 -12.98357 -12.45303 -12.25903 -12.16169 -11.73520 -11.44132 -11.32769 -11.19349 -11.16638 -10.93769 -10.82998 -10.64671 -10.45062 -10.18446 -10.14123 -10.09277 -9.83510 -9.59391 -9.44420 -9.28070 -8.64895 -8.32589 -6.69297 -5.90072 -3.36558 2.44162 2.98695 3.25215 3.36593 3.39115 3.48141 3.63838 4.26263 4.36644 4.57150 4.63943 5.13277 5.22688 5.25054 5.42125 5.44468 5.45415 5.57684 5.63992 5.72334 5.78606 5.84349 5.99373 6.06972 6.14189 6.20561 6.29499 6.33417 6.42098 6.44719 6.45741 6.49245 6.62551 6.87537 6.89849 6.96716 7.08075 7.09177 7.34042 7.60533 7.73737 8.10489 8.35087 8.68932 9.10315 9.71985 10.31054 11.16379 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.004818 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.245645 B = 5810.004817 C = 6925.280927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.032 0.968 8 C 0.135 3.865 9 N -0.681 5.681 10 C 0.537 3.463 11 O -0.552 6.552 12 C -0.185 4.185 13 H 0.151 0.849 14 C -0.143 4.143 15 C 0.216 3.784 16 F -0.153 7.153 17 F -0.158 7.158 18 N -0.585 5.585 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.010 3.990 22 N -0.896 5.896 23 Si 0.888 3.112 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.189 3.811 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.254 0.746 44 H 0.083 0.917 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -4.399 -4.243 6.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.331 5.331 10 C 0.321 3.679 11 O -0.431 6.431 12 C -0.208 4.208 13 H 0.169 0.831 14 C -0.181 4.181 15 C 0.179 3.821 16 F -0.134 7.134 17 F -0.138 7.138 18 N -0.308 5.308 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.190 4.190 22 N -0.539 5.539 23 Si 0.718 3.282 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.215 1.215 27 C 0.063 3.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.361 -4.704 -4.623 6.605 hybrid contribution -0.039 0.176 1.180 1.194 sum 0.322 -4.529 -3.443 5.698 Atomic orbital electron populations 1.21701 0.95127 1.02072 0.99242 1.21238 0.95866 0.94394 0.98160 1.21761 1.00385 0.96488 1.00531 1.21403 0.99612 0.95309 0.96974 1.22006 1.01321 0.96079 0.97572 1.20733 0.96043 0.89220 0.88697 0.95067 1.21339 0.99609 0.91679 0.86273 1.45893 1.45807 1.13540 1.27817 1.19001 0.81871 0.82243 0.84777 1.90658 1.35183 1.68011 1.49295 1.23777 1.01571 0.93111 1.02297 0.83147 1.24272 0.92788 0.95647 1.05390 1.19729 0.84276 1.03719 0.74400 1.93056 1.94224 1.93062 1.33033 1.93041 1.61795 1.95228 1.63765 1.44026 1.65498 1.05649 1.15635 1.19190 1.15905 1.18186 0.84798 0.91323 1.25072 0.96463 1.00250 0.97179 1.70016 1.26186 1.39239 1.18496 0.86441 0.81276 0.78146 0.82345 1.20154 1.21641 1.21533 1.20777 0.96044 0.83073 0.93793 0.93675 0.95034 0.91591 0.93326 0.93941 0.93061 0.92935 0.93617 0.93099 0.91600 0.91355 0.92512 0.74457 0.85368 0.84816 0.93632 0.89887 0.96433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 7.98 37.16 0.30 -1.85 16 2 C -0.09 -1.64 0.77 -154.39 -0.12 -1.76 16 3 C -0.13 -2.06 8.48 37.16 0.32 -1.74 16 4 C -0.10 -1.50 4.71 -26.69 -0.13 -1.63 16 5 C -0.13 -2.09 5.03 -26.61 -0.13 -2.22 16 6 C 0.16 2.94 3.00 -67.60 -0.20 2.73 16 7 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 8 C 0.13 2.44 4.43 -4.04 -0.02 2.42 16 9 N -0.68 -12.51 3.88 -60.30 -0.23 -12.75 16 10 C 0.54 9.73 7.25 -10.99 -0.08 9.65 16 11 O -0.55 -11.29 16.26 5.56 0.09 -11.20 16 12 C -0.19 -2.75 6.17 -91.77 -0.57 -3.32 16 13 H 0.15 2.08 8.14 -51.92 -0.42 1.66 16 14 C -0.14 -1.73 10.02 -26.69 -0.27 -2.00 16 15 C 0.22 3.06 5.20 -26.69 -0.14 2.92 16 16 F -0.15 -2.45 17.13 2.25 0.04 -2.41 16 17 F -0.16 -2.22 17.60 2.25 0.04 -2.18 16 18 N -0.58 -12.47 2.41 -164.77 -0.40 -12.86 16 19 C -0.25 -5.88 6.98 -15.06 -0.11 -5.98 16 20 H 0.07 1.67 5.91 -52.49 -0.31 1.36 16 21 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 22 N -0.90 -23.27 11.32 55.49 0.63 -22.64 16 23 Si 0.89 20.08 29.58 -169.99 -5.03 15.05 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.19 4.01 3.95 -3.71 -0.01 4.00 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.24 5.97 -51.92 -0.31 0.93 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 38 H 0.07 1.35 7.39 -51.93 -0.38 0.96 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.42 7.97 7.44 -40.82 -0.30 7.67 16 41 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.13 1.66 7.67 -51.93 -0.40 1.26 16 43 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 44 H 0.08 2.03 6.26 -51.93 -0.33 1.70 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -26.75 359.55 -7.68 -34.43 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.99 Total: 7.76 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.25 Total: 1.38 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.00 Total: -48.25 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.08 Total: -4.59 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.75 -7.68 -34.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.420 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds