Wall clock time and date at job start Tue Mar 31 2020 11:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.49655 * 2 1 4 4 C 1.53035 * 109.46878 * 239.92394 * 2 1 3 5 5 C 1.53042 * 109.54186 * 301.36199 * 4 2 1 6 6 C 1.53200 * 109.33694 * 298.68900 * 5 4 2 7 7 H 1.09001 * 109.57951 * 294.82508 * 6 5 4 8 8 C 1.53005 * 109.58541 * 174.54721 * 6 5 4 9 9 N 1.46497 * 109.47036 * 179.97438 * 8 6 5 10 10 C 1.34774 * 119.99947 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00276 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99830 * 179.97438 * 10 9 8 13 13 H 1.09007 * 115.55065 * 34.42038 * 12 10 9 14 14 C 1.53004 * 117.49678 * 180.08150 * 12 10 9 15 15 C 1.53002 * 117.50132 * 248.74371 * 12 10 9 16 16 F 1.39896 * 117.49463 * 0.02562 * 15 12 10 17 17 F 1.39895 * 117.49729 * 145.02237 * 15 12 10 18 18 N 1.46921 * 108.77770 * 54.61322 * 6 5 4 19 19 C 1.36938 * 120.62848 * 126.37096 * 18 6 5 20 20 H 1.07995 * 120.00293 * 328.35930 * 19 18 6 21 21 C 1.38816 * 119.99813 * 148.36544 * 19 18 6 22 22 N 1.31622 * 119.99911 * 345.34596 * 21 19 18 23 23 Si 1.86798 * 119.99903 * 165.35364 * 21 19 18 24 24 H 1.48494 * 109.47268 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47274 * 119.99602 * 23 21 19 26 26 H 1.48503 * 109.46859 * 239.99788 * 23 21 19 27 27 C 1.46925 * 118.73978 * 306.39277 * 18 6 5 28 28 H 1.09000 * 109.46947 * 299.92970 * 1 2 3 29 29 H 1.08995 * 109.47555 * 59.93076 * 1 2 3 30 30 H 1.09008 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47293 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47519 * 300.06682 * 3 2 1 33 33 H 1.09002 * 109.47260 * 60.06986 * 3 2 1 34 34 H 1.09002 * 109.43334 * 181.35806 * 4 2 1 35 35 H 1.08996 * 109.48915 * 61.39732 * 4 2 1 36 36 H 1.08994 * 109.50231 * 178.71679 * 5 4 2 37 37 H 1.09000 * 109.49392 * 58.64898 * 5 4 2 38 38 H 1.09003 * 109.46681 * 299.94233 * 8 6 5 39 39 H 1.08994 * 109.47296 * 59.93769 * 8 6 5 40 40 H 0.97004 * 119.99862 * 359.97438 * 9 8 6 41 41 H 1.09000 * 117.50009 * 214.97847 * 14 12 10 42 42 H 1.08998 * 117.49914 * 359.97438 * 14 12 10 43 43 H 0.96996 * 119.99711 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58941 * 173.39562 * 27 18 6 45 45 H 1.08999 * 109.58747 * 293.81752 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0400 -0.7231 -1.2486 5 6 1.5029 -2.1561 -1.2656 6 6 2.0140 -2.9040 -0.0301 7 1 3.0979 -3.0043 -0.0862 8 6 1.3730 -4.2920 0.0308 9 7 1.8638 -5.0051 1.2126 10 6 1.4330 -6.2555 1.4723 11 8 0.6388 -6.7901 0.7279 12 6 1.9384 -6.9893 2.6878 13 1 2.1324 -6.3702 3.5638 14 6 1.4131 -8.4063 2.9265 15 6 2.8542 -8.1928 2.4564 16 9 3.1589 -8.5276 1.1326 17 9 3.8763 -8.4148 3.3854 18 7 1.6516 -2.1379 1.1701 19 6 0.9632 -2.7307 2.1947 20 1 0.2589 -3.5222 1.9854 21 6 1.1706 -2.3142 3.5026 22 7 2.2148 -1.5693 3.7983 23 14 -0.0320 -2.8109 4.8428 24 1 -1.1129 -3.6421 4.2547 25 1 0.6824 -3.5919 5.8843 26 1 -0.6219 -1.5932 5.4547 27 6 2.0413 -0.7235 1.2497 28 1 -0.3633 0.5127 0.8906 29 1 -0.3634 0.5149 -0.8893 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1306 1.4418 -0.0005 32 1 1.6765 1.9566 -0.8893 33 1 1.6785 1.9559 0.8906 34 1 3.1298 -0.7439 -1.2359 35 1 1.6974 -0.1964 -2.1392 36 1 1.8479 -2.6633 -2.1665 37 1 0.4132 -2.1362 -1.2538 38 1 0.2896 -4.1894 0.0928 39 1 1.6340 -4.8524 -0.8668 40 1 2.4993 -4.5776 1.8078 41 1 1.2621 -8.7198 3.9595 42 1 0.7018 -8.8077 2.2047 43 1 2.3598 -1.2786 4.7122 44 1 1.6008 -0.2726 2.1389 45 1 3.1275 -0.6460 1.2982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089639830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:45 Heat of formation + Delta-G solvation = -105.271918 kcal Electronic energy + Delta-G solvation = -28413.236670 eV Core-core repulsion = 24295.241149 eV Total energy + Delta-G solvation = -4117.995521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.81066 -48.49196 -41.00749 -40.02792 -36.99917 -36.28845 -34.98703 -33.67514 -31.74374 -29.19536 -28.00857 -27.30693 -26.07823 -24.29991 -23.62956 -23.58635 -21.73439 -21.10076 -19.46647 -19.36572 -18.50642 -17.91508 -17.34831 -17.23995 -17.08694 -16.47266 -16.02235 -15.66287 -15.33191 -15.21207 -15.11983 -14.95861 -14.74307 -14.71482 -14.62216 -14.51088 -13.90079 -13.77499 -13.28088 -13.15272 -12.98226 -12.82067 -12.74266 -12.51368 -12.49164 -12.32224 -12.16506 -12.10754 -11.85062 -11.63885 -11.34207 -11.25666 -11.03343 -10.90086 -10.79780 -10.47725 -9.89170 -8.49824 -7.78659 -5.25553 1.15178 1.41664 1.49984 1.55471 1.89815 2.17308 2.36977 2.52173 3.15402 3.35174 3.42452 3.49265 3.60793 3.93956 3.99784 4.04493 4.20712 4.32662 4.41463 4.46930 4.52944 4.57883 4.68526 4.74770 4.80184 4.87167 4.93329 4.96214 5.06096 5.10526 5.14700 5.16644 5.26228 5.40290 5.47252 5.53525 5.57837 5.64153 5.74599 5.83123 5.89054 6.48398 6.61455 7.21035 7.24154 7.92593 8.47316 9.25358 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.004818 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.245645 B = 5810.004817 C = 6925.280927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.160 3.840 7 H 0.027 0.973 8 C 0.140 3.860 9 N -0.686 5.686 10 C 0.533 3.467 11 O -0.578 6.578 12 C -0.203 4.203 13 H 0.159 0.841 14 C -0.114 4.114 15 C 0.211 3.789 16 F -0.167 7.167 17 F -0.157 7.157 18 N -0.594 5.594 19 C -0.230 4.230 20 H 0.062 0.938 21 C -0.032 4.032 22 N -0.924 5.924 23 Si 0.934 3.066 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.301 1.301 27 C 0.198 3.802 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.413 0.587 41 H 0.166 0.834 42 H 0.133 0.867 43 H 0.246 0.754 44 H 0.046 0.954 45 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -4.862 -5.449 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.187 4.187 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.054 3.946 7 H 0.045 0.955 8 C 0.016 3.984 9 N -0.334 5.334 10 C 0.319 3.681 11 O -0.459 6.459 12 C -0.225 4.225 13 H 0.177 0.823 14 C -0.151 4.151 15 C 0.174 3.826 16 F -0.148 7.148 17 F -0.137 7.137 18 N -0.318 5.318 19 C -0.361 4.361 20 H 0.080 0.920 21 C -0.228 4.228 22 N -0.570 5.570 23 Si 0.765 3.235 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.229 1.229 27 C 0.073 3.927 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.250 0.750 41 H 0.183 0.817 42 H 0.152 0.848 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -0.029 -5.179 -5.850 7.813 hybrid contribution 0.094 0.305 1.500 1.534 sum 0.064 -4.874 -4.350 6.533 Atomic orbital electron populations 1.21617 0.94908 1.01044 0.99832 1.21148 0.95928 0.95385 0.96891 1.21713 1.00507 0.95103 1.01367 1.21383 0.99592 0.94986 0.96891 1.21952 1.01053 0.96281 0.97094 1.20859 0.95817 0.89393 0.88538 0.95497 1.21292 0.98423 0.91794 0.86890 1.45969 1.45700 1.13937 1.27832 1.19496 0.81239 0.81993 0.85373 1.90635 1.36315 1.68476 1.50518 1.23790 1.03326 0.94229 1.01108 0.82294 1.24467 0.90679 0.92579 1.07402 1.19858 0.85247 1.03514 0.73969 1.93026 1.94417 1.93112 1.34197 1.93044 1.61975 1.95158 1.63555 1.44173 1.65350 1.06151 1.16130 1.19194 1.14799 1.16930 0.85182 0.92047 1.25489 0.97562 1.01179 0.98594 1.70131 1.27677 1.41041 1.18117 0.85712 0.79854 0.77180 0.80801 1.20171 1.21382 1.22852 1.20541 0.94229 0.83389 0.94557 0.95240 0.92216 0.93391 0.93149 0.91298 0.94000 0.92931 0.90836 0.90389 0.91945 0.93075 0.91100 0.75000 0.81654 0.84845 0.94428 0.93550 0.98934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 7.98 71.98 0.57 -3.30 16 2 C -0.09 -3.07 0.77 -52.11 -0.04 -3.11 16 3 C -0.13 -3.75 8.48 71.98 0.61 -3.14 16 4 C -0.09 -2.62 4.71 30.62 0.14 -2.47 16 5 C -0.12 -3.70 5.03 30.68 0.15 -3.55 16 6 C 0.16 5.77 3.00 44.98 0.13 5.90 16 7 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 8 C 0.14 5.00 4.43 86.38 0.38 5.38 16 9 N -0.69 -25.22 3.88 -463.07 -1.80 -27.02 16 10 C 0.53 19.11 7.25 87.66 0.64 19.75 16 11 O -0.58 -23.38 16.26 -3.03 -0.05 -23.43 16 12 C -0.20 -5.77 6.17 -11.54 -0.07 -5.84 16 13 H 0.16 4.22 8.14 -2.38 -0.02 4.20 16 14 C -0.11 -2.48 10.02 30.62 0.31 -2.17 16 15 C 0.21 5.68 5.20 30.62 0.16 5.84 16 16 F -0.17 -5.20 17.13 44.97 0.77 -4.43 16 17 F -0.16 -4.17 17.60 44.97 0.79 -3.38 16 18 N -0.59 -25.60 2.41 -675.22 -1.62 -27.22 16 19 C -0.23 -10.94 6.98 84.03 0.59 -10.36 16 20 H 0.06 3.01 5.91 -2.91 -0.02 3.00 16 21 C -0.03 -1.59 4.95 84.86 0.42 -1.17 16 22 N -0.92 -49.48 11.32 21.65 0.25 -49.24 16 23 Si 0.93 41.92 29.58 68.60 2.03 43.95 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 C 0.20 8.59 3.95 86.36 0.34 8.93 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.75 5.97 -2.38 -0.01 1.74 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.93 6.34 -2.39 -0.02 1.92 16 38 H 0.05 2.01 7.39 -2.39 -0.02 1.99 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.41 15.97 7.44 -92.71 -0.69 15.28 16 41 H 0.17 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.13 3.01 7.67 -2.39 -0.02 2.99 16 43 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 44 H 0.05 2.35 6.26 -2.39 -0.01 2.33 16 45 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: -1.00 -58.75 359.55 5.01 -53.74 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.31 Total: 26.35 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.34 Total: 10.69 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.18 Total: -103.48 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 1.56 Total: -7.81 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -58.75 5.01 -53.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.536 kcal (2) G-P(sol) polarization free energy of solvation -58.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds