Wall clock time and date at job start Tue Mar 31 2020 11:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.52499 * 2 1 4 4 C 1.53038 * 109.49800 * 120.08319 * 2 1 3 5 5 C 1.53042 * 109.53812 * 181.31413 * 4 2 1 6 6 C 1.53183 * 109.31374 * 298.63470 * 5 4 2 7 7 H 1.08997 * 109.58999 * 294.70518 * 6 5 4 8 8 C 1.53002 * 109.58749 * 174.42106 * 6 5 4 9 9 N 1.46498 * 109.47169 * 179.97438 * 8 6 5 10 10 C 1.34773 * 120.00345 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99617 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.00330 * 179.97438 * 10 9 8 13 13 H 1.08993 * 115.55916 * 34.31849 * 12 10 9 14 14 C 1.53005 * 117.49815 * 248.62068 * 12 10 9 15 15 C 1.52998 * 60.00073 * 252.51436 * 14 12 10 16 16 F 1.39905 * 117.49888 * 252.51449 * 15 14 12 17 17 F 1.39895 * 117.51869 * 107.48327 * 15 14 12 18 18 N 1.46930 * 108.77536 * 54.63327 * 6 5 4 19 19 C 1.36934 * 120.62883 * 126.41416 * 18 6 5 20 20 H 1.07998 * 120.00320 * 328.32284 * 19 18 6 21 21 C 1.38816 * 120.00135 * 148.32268 * 19 18 6 22 22 N 1.31622 * 119.99689 * 345.31953 * 21 19 18 23 23 Si 1.86797 * 120.00071 * 165.32361 * 21 19 18 24 24 H 1.48496 * 109.47578 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47212 * 120.00113 * 23 21 19 26 26 H 1.48503 * 109.46852 * 239.99797 * 23 21 19 27 27 C 1.46919 * 118.73847 * 306.39138 * 18 6 5 28 28 H 1.09007 * 109.47039 * 299.91884 * 1 2 3 29 29 H 1.09002 * 109.47446 * 59.91532 * 1 2 3 30 30 H 1.09001 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46946 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46661 * 300.08354 * 3 2 1 33 33 H 1.08994 * 109.46921 * 60.08299 * 3 2 1 34 34 H 1.08994 * 109.46434 * 61.29459 * 4 2 1 35 35 H 1.09006 * 109.44825 * 301.32510 * 4 2 1 36 36 H 1.08999 * 109.49559 * 178.67870 * 5 4 2 37 37 H 1.09004 * 109.51981 * 58.60535 * 5 4 2 38 38 H 1.09000 * 109.47091 * 59.92566 * 8 6 5 39 39 H 1.08999 * 109.47342 * 299.91987 * 8 6 5 40 40 H 0.97007 * 120.00159 * 359.97438 * 9 8 6 41 41 H 1.08999 * 117.49858 * 0.02562 * 14 12 10 42 42 H 1.09000 * 117.48955 * 145.01981 * 14 12 10 43 43 H 0.97002 * 119.99687 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.59076 * 293.81729 * 27 18 6 45 45 H 1.09006 * 109.58441 * 173.39398 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5708 -0.6951 1.2659 6 6 4.1052 -1.4267 0.0307 7 1 3.8397 -2.4823 0.0879 8 6 5.6272 -1.2834 -0.0318 9 7 6.1356 -1.9844 -1.2135 10 6 7.4577 -1.9931 -1.4751 11 8 8.2266 -1.4209 -0.7319 12 6 7.9807 -2.7147 -2.6904 13 1 7.3305 -2.6951 -3.5649 14 6 8.8152 -3.9759 -2.4583 15 6 9.4912 -2.6878 -2.9322 16 9 9.9321 -2.6401 -4.2591 17 9 10.2810 -1.9948 -2.0087 18 7 3.5045 -0.8291 -1.1696 19 6 4.2934 -0.3793 -2.1945 20 1 5.2748 0.0200 -1.9853 21 6 3.8318 -0.4365 -3.5024 22 7 2.7811 -1.1723 -3.7978 23 14 4.7017 0.5305 -4.8430 24 1 5.8459 1.2724 -4.2553 25 1 5.1995 -0.4043 -5.8840 26 1 3.7508 1.4927 -5.4557 27 6 2.0413 -0.7238 -1.2496 28 1 -0.3633 0.5126 0.8908 29 1 -0.3634 0.5151 -0.8892 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1313 1.4410 -0.0005 32 1 1.6772 1.9566 -0.8893 33 1 1.6797 1.9557 0.8907 34 1 1.6967 -1.7573 1.2353 35 1 1.6582 -0.2243 2.1388 36 1 3.9334 -1.1897 2.1670 37 1 3.9163 0.3387 1.2544 38 1 6.0700 -1.7149 0.8659 39 1 5.8905 -0.2276 -0.0955 40 1 5.5206 -2.4424 -1.8077 41 1 8.9856 -4.2840 -1.4267 42 1 8.7139 -4.7862 -3.1804 43 1 2.4588 -1.2125 -4.7118 44 1 1.6051 -1.7215 -1.2981 45 1 1.7637 -0.1579 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089639831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:53 Heat of formation + Delta-G solvation = -90.132900 kcal Electronic energy + Delta-G solvation = -28395.900976 eV Core-core repulsion = 24278.561932 eV Total energy + Delta-G solvation = -4117.339044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.52564 -47.16618 -39.52636 -38.54891 -35.70181 -34.92439 -33.24996 -32.17054 -30.05276 -27.76769 -26.64047 -25.53192 -24.74341 -22.89427 -22.42665 -22.15648 -20.17976 -19.72281 -18.05837 -17.93873 -17.01600 -16.37840 -15.85829 -15.83520 -15.58143 -14.85226 -14.52070 -14.16055 -13.88573 -13.85262 -13.77090 -13.57438 -13.39894 -13.32229 -13.20358 -12.96633 -12.47944 -12.35905 -12.21005 -11.74315 -11.45633 -11.32723 -11.18868 -11.08861 -10.91834 -10.82560 -10.65427 -10.44802 -10.15947 -10.10211 -10.05970 -9.83789 -9.55415 -9.42006 -9.26052 -8.64305 -8.31110 -6.69386 -5.90102 -3.36488 2.59248 2.98905 3.27297 3.35576 3.38426 3.42718 3.69827 4.32525 4.37973 4.57616 4.69026 5.13515 5.21298 5.24796 5.36692 5.41772 5.44973 5.57238 5.66368 5.72105 5.73946 5.83913 5.98735 6.06398 6.13895 6.20274 6.29009 6.33055 6.41483 6.44470 6.45079 6.49146 6.62304 6.87105 6.89577 6.96929 7.08530 7.09414 7.33703 7.60197 7.74661 8.12412 8.35247 8.72176 9.10686 9.72157 10.30852 11.16232 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.004685 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.711468 B = 5975.034550 C = 7136.774715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.124 4.124 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.161 3.839 7 H 0.032 0.968 8 C 0.135 3.865 9 N -0.682 5.682 10 C 0.534 3.466 11 O -0.546 6.546 12 C -0.188 4.188 13 H 0.150 0.850 14 C -0.150 4.150 15 C 0.223 3.777 16 F -0.160 7.160 17 F -0.140 7.140 18 N -0.584 5.584 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.011 3.989 22 N -0.896 5.896 23 Si 0.886 3.114 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.288 1.288 27 C 0.189 3.811 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.417 0.583 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.253 0.747 44 H 0.018 0.982 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -4.805 5.234 7.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.182 4.182 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.054 3.946 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.333 5.333 10 C 0.318 3.682 11 O -0.425 6.425 12 C -0.210 4.210 13 H 0.167 0.833 14 C -0.188 4.188 15 C 0.186 3.814 16 F -0.141 7.141 17 F -0.121 7.121 18 N -0.308 5.308 19 C -0.380 4.380 20 H 0.087 0.913 21 C -0.188 4.188 22 N -0.540 5.540 23 Si 0.716 3.284 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.215 1.215 27 C 0.063 3.937 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.255 0.745 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.102 -4.394 5.587 7.755 hybrid contribution 0.058 0.509 -1.335 1.430 sum 3.160 -3.885 4.251 6.569 Atomic orbital electron populations 1.21762 0.96031 1.00837 1.00534 1.21241 0.93849 0.96407 0.98164 1.21702 1.02125 0.95087 0.99244 1.21404 0.95283 0.99616 0.96982 1.22007 0.96103 1.01323 0.97568 1.20728 0.90010 0.95218 0.88678 0.95082 1.21327 0.93918 0.97365 0.86263 1.45885 1.06233 1.53214 1.27925 1.19064 0.83229 0.81067 0.84872 1.90730 1.56836 1.45556 1.49385 1.23677 0.93741 1.01167 1.02388 0.83254 1.24239 0.97525 0.91486 1.05547 1.19520 0.88305 0.99525 0.74045 1.93033 1.90738 1.96946 1.33358 1.93105 1.75262 1.80224 1.63467 1.44027 1.01716 1.69423 1.15616 1.19193 1.00054 1.34015 0.84774 0.91324 1.25051 0.98260 0.98381 0.97154 1.70017 1.26142 1.39328 1.18492 0.86469 0.79385 0.80148 0.82397 1.20147 1.21594 1.21495 1.20776 0.82645 0.96473 0.93798 0.93957 0.93049 0.93327 0.91587 0.93660 0.95044 0.92936 0.93637 0.93120 0.91602 0.92581 0.91437 0.74507 0.85637 0.85232 0.93652 0.96433 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.48 37.16 0.32 -1.73 16 2 C -0.09 -1.63 0.77 -154.39 -0.12 -1.75 16 3 C -0.12 -2.15 7.99 37.16 0.30 -1.86 16 4 C -0.10 -1.48 4.71 -26.69 -0.13 -1.61 16 5 C -0.13 -2.06 5.03 -26.61 -0.13 -2.19 16 6 C 0.16 2.89 3.00 -67.60 -0.20 2.69 16 7 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.14 2.40 4.43 -4.04 -0.02 2.39 16 9 N -0.68 -12.17 3.87 -60.29 -0.23 -12.41 16 10 C 0.53 9.61 7.61 -10.99 -0.08 9.53 16 11 O -0.55 -11.47 15.14 5.55 0.08 -11.39 16 12 C -0.19 -2.77 6.17 -91.77 -0.57 -3.34 16 13 H 0.15 2.07 8.14 -51.93 -0.42 1.65 16 14 C -0.15 -1.68 10.20 -26.73 -0.27 -1.95 16 15 C 0.22 3.33 5.19 -26.73 -0.14 3.19 16 16 F -0.16 -2.40 17.60 2.25 0.04 -2.36 16 17 F -0.14 -2.46 15.71 2.25 0.04 -2.43 16 18 N -0.58 -12.36 2.41 -164.78 -0.40 -12.75 16 19 C -0.25 -5.88 6.97 -15.06 -0.10 -5.99 16 20 H 0.07 1.69 5.89 -52.49 -0.31 1.38 16 21 C 0.01 0.28 4.94 -17.43 -0.09 0.19 16 22 N -0.90 -23.20 11.32 55.49 0.63 -22.57 16 23 Si 0.89 20.47 29.58 -169.99 -5.03 15.44 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.19 3.98 3.94 -3.71 -0.01 3.97 16 28 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.34 7.38 -51.93 -0.38 0.96 16 40 H 0.42 7.64 7.44 -40.82 -0.30 7.34 16 41 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 2.02 6.27 -51.93 -0.33 1.69 16 LS Contribution 358.00 15.07 5.40 5.40 Total: -1.00 -27.45 358.00 -7.75 -35.20 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.01 Total: 6.33 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.26 Total: 1.53 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.00 Total: -47.73 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.08 Total: -4.78 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.45 -7.75 -35.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.937 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds