Wall clock time and date at job start Tue Mar 31 2020 11:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.49838 * 2 1 4 4 C 1.53041 * 109.49697 * 120.06117 * 2 1 3 5 5 C 1.53045 * 109.54008 * 58.58600 * 4 2 1 6 6 C 1.53190 * 109.30832 * 61.36608 * 5 4 2 7 7 H 1.08995 * 109.58962 * 65.15346 * 6 5 4 8 8 C 1.53006 * 109.58025 * 185.57982 * 6 5 4 9 9 N 1.46504 * 109.46722 * 179.41154 * 8 6 5 10 10 C 1.34774 * 120.00012 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00005 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00272 * 179.97438 * 10 9 8 13 13 H 1.09001 * 115.54306 * 34.42566 * 12 10 9 14 14 C 1.52993 * 117.50055 * 248.75533 * 12 10 9 15 15 C 1.52994 * 117.49802 * 180.09053 * 12 10 9 16 16 F 1.39901 * 117.49992 * 214.97923 * 15 12 10 17 17 F 1.39902 * 117.50188 * 359.97438 * 15 12 10 18 18 N 1.46922 * 108.77656 * 305.36458 * 6 5 4 19 19 C 1.36939 * 120.63140 * 233.59073 * 18 6 5 20 20 H 1.07996 * 120.00133 * 32.71171 * 19 18 6 21 21 C 1.38811 * 120.00245 * 212.71752 * 19 18 6 22 22 N 1.31625 * 119.99834 * 10.36872 * 21 19 18 23 23 Si 1.86796 * 120.00564 * 190.37355 * 21 19 18 24 24 H 1.48505 * 109.47282 * 89.99667 * 23 21 19 25 25 H 1.48497 * 109.47573 * 209.99914 * 23 21 19 26 26 H 1.48501 * 109.46972 * 330.00036 * 23 21 19 27 27 C 1.46925 * 118.74127 * 53.86209 * 18 6 5 28 28 H 1.09004 * 109.47120 * 299.93875 * 1 2 3 29 29 H 1.09002 * 109.47354 * 59.94035 * 1 2 3 30 30 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47100 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.06268 * 3 2 1 33 33 H 1.08993 * 109.47238 * 60.05978 * 3 2 1 34 34 H 1.09005 * 109.45947 * 298.56823 * 4 2 1 35 35 H 1.09006 * 109.44948 * 178.60466 * 4 2 1 36 36 H 1.09000 * 109.49397 * 301.41681 * 5 4 2 37 37 H 1.08997 * 109.49264 * 181.31755 * 5 4 2 38 38 H 1.08994 * 109.47234 * 299.40828 * 8 6 5 39 39 H 1.08997 * 109.47178 * 59.41523 * 8 6 5 40 40 H 0.97003 * 119.99796 * 359.97438 * 9 8 6 41 41 H 1.08997 * 117.50088 * 359.97438 * 14 12 10 42 42 H 1.09007 * 117.49960 * 145.02103 * 14 12 10 43 43 H 0.97000 * 120.00251 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.58601 * 65.92582 * 27 18 6 45 45 H 1.08998 * 109.59271 * 186.35204 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1554 1.2668 6 6 2.0140 -2.9040 0.0318 7 1 3.0979 -3.0042 0.0878 8 6 1.3702 -4.2906 -0.0301 9 7 1.8499 -4.9989 -1.2195 10 6 1.4149 -6.2474 -1.4814 11 8 0.6261 -6.7842 -0.7329 12 6 1.9079 -6.9758 -2.7052 13 1 2.9397 -6.7708 -2.9904 14 6 0.9014 -7.2304 -3.8290 15 6 1.3752 -8.3893 -2.9482 16 9 2.2496 -9.3196 -3.5203 17 9 0.4683 -8.9069 -2.0172 18 7 1.6516 -2.1386 -1.1687 19 6 0.9639 -2.7322 -2.1934 20 1 0.2473 -3.5121 -1.9824 21 6 1.1880 -2.3316 -3.5035 22 7 2.1970 -1.5344 -3.7844 23 14 0.0576 -2.9236 -4.8677 24 1 -1.0664 -1.9666 -5.0295 25 1 0.8198 -3.0115 -6.1390 26 1 -0.4795 -4.2634 -4.5189 27 6 2.0462 -0.7257 -1.2517 28 1 -0.3633 0.5129 0.8906 29 1 -0.3634 0.5148 -0.8894 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6766 1.9565 -0.8895 33 1 1.6785 1.9559 0.8905 34 1 1.6987 -0.1951 2.1390 35 1 3.1305 -0.7439 1.2354 36 1 0.4132 -2.1350 1.2548 37 1 1.8480 -2.6620 2.1681 38 1 1.6385 -4.8560 0.8623 39 1 0.2865 -4.1860 -0.0819 40 1 2.4805 -4.5693 -1.8184 41 1 -0.1173 -6.8715 -3.6832 42 1 1.2712 -7.1934 -4.8538 43 1 2.3538 -1.2547 -4.6999 44 1 3.1327 -0.6519 -1.2982 45 1 1.6089 -0.2759 -2.1430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089639832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:58 Heat of formation + Delta-G solvation = -90.049679 kcal Electronic energy + Delta-G solvation = -28477.899533 eV Core-core repulsion = 24360.564099 eV Total energy + Delta-G solvation = -4117.335435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.52672 -47.16003 -39.51688 -38.52331 -35.65980 -34.91143 -33.25528 -32.16413 -30.04048 -27.76049 -26.63243 -25.53956 -24.73808 -22.84359 -22.40347 -22.13963 -20.18386 -19.72194 -18.03829 -17.94109 -16.99197 -16.38362 -15.83757 -15.81055 -15.59512 -14.87904 -14.46394 -14.18848 -13.93979 -13.83323 -13.79930 -13.45907 -13.41338 -13.31000 -13.17751 -12.96652 -12.51082 -12.30154 -12.20414 -11.71508 -11.45051 -11.33913 -11.17581 -11.03861 -10.93375 -10.83610 -10.66292 -10.45157 -10.17093 -10.12098 -10.03032 -9.83039 -9.54849 -9.41288 -9.27254 -8.64976 -8.30360 -6.68167 -5.89886 -3.39098 2.62871 3.03398 3.23965 3.28954 3.33414 3.35694 3.79944 4.35031 4.38788 4.58519 4.71296 5.15167 5.19814 5.24348 5.42382 5.45716 5.50021 5.57917 5.68344 5.72942 5.81215 5.84565 5.99017 6.06799 6.14315 6.20816 6.29685 6.33716 6.42157 6.45041 6.45699 6.49388 6.62759 6.88300 6.89853 6.97378 7.09090 7.09849 7.35189 7.64055 7.72342 8.12935 8.35916 8.72623 9.10439 9.71026 10.30325 11.16042 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016013 B = 0.004710 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.193027 B = 5943.817557 C = 7101.605274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.032 0.968 8 C 0.136 3.864 9 N -0.682 5.682 10 C 0.533 3.467 11 O -0.546 6.546 12 C -0.184 4.184 13 H 0.146 0.854 14 C -0.146 4.146 15 C 0.221 3.779 16 F -0.162 7.162 17 F -0.141 7.141 18 N -0.585 5.585 19 C -0.249 4.249 20 H 0.068 0.932 21 C 0.010 3.990 22 N -0.899 5.899 23 Si 0.891 3.109 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.188 3.812 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -2.978 3.428 4.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 C -0.192 4.192 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.049 0.951 8 C 0.012 3.988 9 N -0.333 5.333 10 C 0.317 3.683 11 O -0.425 6.425 12 C -0.206 4.206 13 H 0.164 0.836 14 C -0.185 4.185 15 C 0.183 3.817 16 F -0.142 7.142 17 F -0.121 7.121 18 N -0.309 5.309 19 C -0.379 4.379 20 H 0.086 0.914 21 C -0.189 4.189 22 N -0.543 5.543 23 Si 0.721 3.279 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.202 1.202 27 C 0.063 3.937 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.787 -3.331 3.810 5.122 hybrid contribution -0.170 -0.051 -1.123 1.137 sum 0.617 -3.383 2.688 4.364 Atomic orbital electron populations 1.21689 0.95154 1.02032 0.99209 1.21328 0.95817 0.94368 0.98210 1.21760 1.00357 0.96540 1.00498 1.21409 0.99574 0.95321 0.97004 1.22007 1.01314 0.96087 0.97575 1.20740 0.95991 0.89244 0.88709 0.95071 1.21319 0.99661 0.91719 0.86125 1.45896 1.46604 1.13572 1.27186 1.19080 0.81865 0.82272 0.85064 1.90727 1.34914 1.67588 1.49300 1.23607 1.02815 0.95455 0.98719 0.83649 1.24265 1.01723 0.95311 0.97163 1.19596 0.88106 0.81076 0.92878 1.93019 1.68932 1.68095 1.84182 1.93104 1.65591 1.88139 1.65244 1.44034 1.65311 1.05850 1.15676 1.19158 1.15339 1.18673 0.84694 0.91408 1.25117 0.96644 0.99863 0.97314 1.69972 1.28238 1.37429 1.18634 0.86473 0.80494 0.78932 0.82031 1.21503 1.21692 1.20180 1.20908 0.95922 0.83056 0.93850 0.95081 0.93672 0.91636 0.93354 0.93053 0.94007 0.93676 0.92961 0.91622 0.93137 0.92576 0.91491 0.74500 0.85472 0.85234 0.93586 0.96475 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 7.99 37.16 0.30 -1.84 16 2 C -0.10 -1.64 0.77 -154.17 -0.12 -1.76 16 3 C -0.13 -2.05 8.48 37.16 0.32 -1.73 16 4 C -0.10 -1.49 4.71 -26.69 -0.13 -1.62 16 5 C -0.13 -2.06 5.03 -26.61 -0.13 -2.20 16 6 C 0.16 2.88 3.01 -67.60 -0.20 2.68 16 7 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.14 2.41 4.43 -4.04 -0.02 2.39 16 9 N -0.68 -12.19 3.87 -60.29 -0.23 -12.43 16 10 C 0.53 9.64 7.61 -10.98 -0.08 9.55 16 11 O -0.55 -11.50 15.14 5.56 0.08 -11.42 16 12 C -0.18 -2.73 6.17 -91.78 -0.57 -3.30 16 13 H 0.15 1.78 8.14 -51.93 -0.42 1.36 16 14 C -0.15 -2.00 10.21 -26.70 -0.27 -2.27 16 15 C 0.22 3.31 5.19 -26.69 -0.14 3.17 16 16 F -0.16 -2.31 17.60 2.25 0.04 -2.27 16 17 F -0.14 -2.48 15.71 2.25 0.04 -2.44 16 18 N -0.59 -12.28 2.40 -164.52 -0.39 -12.67 16 19 C -0.25 -5.72 6.90 -15.06 -0.10 -5.83 16 20 H 0.07 1.62 5.93 -52.49 -0.31 1.31 16 21 C 0.01 0.24 5.05 -17.43 -0.09 0.16 16 22 N -0.90 -22.98 11.12 55.49 0.62 -22.36 16 23 Si 0.89 19.64 29.57 -169.99 -5.03 14.61 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 27 C 0.19 3.96 3.97 -3.49 -0.01 3.94 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.23 5.97 -51.93 -0.31 0.92 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.08 6.33 -51.93 -0.33 0.76 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.31 7.42 -51.93 -0.39 0.93 16 40 H 0.42 7.65 7.38 -40.82 -0.30 7.35 16 41 H 0.13 1.85 8.14 -51.93 -0.42 1.42 16 42 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.11 6.18 -51.93 -0.32 1.79 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -26.55 357.78 -7.75 -34.31 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.01 Total: 7.91 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.26 Total: 1.36 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.01 Total: -47.46 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.08 Total: -4.71 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.55 -7.75 -34.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.744 kcal (2) G-P(sol) polarization free energy of solvation -26.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds