Wall clock time and date at job start Tue Mar 31 2020 11:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.49838 * 2 1 4 4 C 1.53041 * 109.49697 * 120.06117 * 2 1 3 5 5 C 1.53045 * 109.54008 * 58.58600 * 4 2 1 6 6 C 1.53190 * 109.30832 * 61.36608 * 5 4 2 7 7 H 1.08995 * 109.58962 * 65.15346 * 6 5 4 8 8 C 1.53006 * 109.58025 * 185.57982 * 6 5 4 9 9 N 1.46504 * 109.46722 * 179.41154 * 8 6 5 10 10 C 1.34774 * 120.00012 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00005 * 0.02562 * 10 9 8 12 12 C 1.50704 * 120.00272 * 179.97438 * 10 9 8 13 13 H 1.09001 * 115.54306 * 34.42566 * 12 10 9 14 14 C 1.52993 * 117.50055 * 248.75533 * 12 10 9 15 15 C 1.52994 * 117.49802 * 180.09053 * 12 10 9 16 16 F 1.39901 * 117.49992 * 214.97923 * 15 12 10 17 17 F 1.39902 * 117.50188 * 359.97438 * 15 12 10 18 18 N 1.46922 * 108.77656 * 305.36458 * 6 5 4 19 19 C 1.36939 * 120.63140 * 233.59073 * 18 6 5 20 20 H 1.07996 * 120.00133 * 32.71171 * 19 18 6 21 21 C 1.38811 * 120.00245 * 212.71752 * 19 18 6 22 22 N 1.31625 * 119.99834 * 10.36872 * 21 19 18 23 23 Si 1.86796 * 120.00564 * 190.37355 * 21 19 18 24 24 H 1.48505 * 109.47282 * 89.99667 * 23 21 19 25 25 H 1.48497 * 109.47573 * 209.99914 * 23 21 19 26 26 H 1.48501 * 109.46972 * 330.00036 * 23 21 19 27 27 C 1.46925 * 118.74127 * 53.86209 * 18 6 5 28 28 H 1.09004 * 109.47120 * 299.93875 * 1 2 3 29 29 H 1.09002 * 109.47354 * 59.94035 * 1 2 3 30 30 H 1.09000 * 109.47266 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47100 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46658 * 300.06268 * 3 2 1 33 33 H 1.08993 * 109.47238 * 60.05978 * 3 2 1 34 34 H 1.09005 * 109.45947 * 298.56823 * 4 2 1 35 35 H 1.09006 * 109.44948 * 178.60466 * 4 2 1 36 36 H 1.09000 * 109.49397 * 301.41681 * 5 4 2 37 37 H 1.08997 * 109.49264 * 181.31755 * 5 4 2 38 38 H 1.08994 * 109.47234 * 299.40828 * 8 6 5 39 39 H 1.08997 * 109.47178 * 59.41523 * 8 6 5 40 40 H 0.97003 * 119.99796 * 359.97438 * 9 8 6 41 41 H 1.08997 * 117.50088 * 359.97438 * 14 12 10 42 42 H 1.09007 * 117.49960 * 145.02103 * 14 12 10 43 43 H 0.97000 * 120.00251 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.58601 * 65.92582 * 27 18 6 45 45 H 1.08998 * 109.59271 * 186.35204 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1554 1.2668 6 6 2.0140 -2.9040 0.0318 7 1 3.0979 -3.0042 0.0878 8 6 1.3702 -4.2906 -0.0301 9 7 1.8499 -4.9989 -1.2195 10 6 1.4149 -6.2474 -1.4814 11 8 0.6261 -6.7842 -0.7329 12 6 1.9079 -6.9758 -2.7052 13 1 2.9397 -6.7708 -2.9904 14 6 0.9014 -7.2304 -3.8290 15 6 1.3752 -8.3893 -2.9482 16 9 2.2496 -9.3196 -3.5203 17 9 0.4683 -8.9069 -2.0172 18 7 1.6516 -2.1386 -1.1687 19 6 0.9639 -2.7322 -2.1934 20 1 0.2473 -3.5121 -1.9824 21 6 1.1880 -2.3316 -3.5035 22 7 2.1970 -1.5344 -3.7844 23 14 0.0576 -2.9236 -4.8677 24 1 -1.0664 -1.9666 -5.0295 25 1 0.8198 -3.0115 -6.1390 26 1 -0.4795 -4.2634 -4.5189 27 6 2.0462 -0.7257 -1.2517 28 1 -0.3633 0.5129 0.8906 29 1 -0.3634 0.5148 -0.8894 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6766 1.9565 -0.8895 33 1 1.6785 1.9559 0.8905 34 1 1.6987 -0.1951 2.1390 35 1 3.1305 -0.7439 1.2354 36 1 0.4132 -2.1350 1.2548 37 1 1.8480 -2.6620 2.1681 38 1 1.6385 -4.8560 0.8623 39 1 0.2865 -4.1860 -0.0819 40 1 2.4805 -4.5693 -1.8184 41 1 -0.1173 -6.8715 -3.6832 42 1 1.2712 -7.1934 -4.8538 43 1 2.3538 -1.2547 -4.6999 44 1 3.1327 -0.6519 -1.2982 45 1 1.6089 -0.2759 -2.1430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089639832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:57 Heat of formation + Delta-G solvation = -103.196565 kcal Electronic energy + Delta-G solvation = -28478.469625 eV Core-core repulsion = 24360.564099 eV Total energy + Delta-G solvation = -4117.905527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.72321 -48.38751 -40.97277 -39.97942 -36.95207 -36.33351 -34.95371 -33.63114 -31.69895 -29.15502 -27.99954 -27.28139 -26.06670 -24.29703 -23.73249 -23.43515 -21.70768 -21.10700 -19.44202 -19.31179 -18.37481 -17.84044 -17.24618 -17.21405 -17.03632 -16.25231 -16.04851 -15.70915 -15.40714 -15.28404 -15.04161 -14.84956 -14.75467 -14.63072 -14.51742 -14.40203 -13.93608 -13.71676 -13.50227 -13.12213 -12.93861 -12.81270 -12.72817 -12.48450 -12.46694 -12.24476 -12.16337 -12.08849 -11.81131 -11.61337 -11.24269 -11.22780 -11.01912 -10.87968 -10.75521 -10.43623 -9.85242 -8.44714 -7.74188 -5.24105 1.31272 1.45683 1.53548 1.57253 1.82864 2.03942 2.48318 2.55606 3.22202 3.36422 3.42860 3.52085 3.64557 3.93853 4.02342 4.06514 4.22462 4.34902 4.42758 4.46835 4.55064 4.56434 4.70102 4.70918 4.77704 4.88770 4.95210 4.97494 5.07614 5.12060 5.15974 5.18445 5.27836 5.42742 5.49951 5.55456 5.60885 5.66335 5.77690 5.85324 5.93177 6.52683 6.66597 7.26164 7.28862 7.95631 8.50473 9.28960 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016013 B = 0.004710 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.193027 B = 5943.817557 C = 7101.605274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.091 4.091 5 C -0.125 4.125 6 C 0.161 3.839 7 H 0.031 0.969 8 C 0.141 3.859 9 N -0.682 5.682 10 C 0.530 3.470 11 O -0.580 6.580 12 C -0.189 4.189 13 H 0.174 0.826 14 C -0.133 4.133 15 C 0.215 3.785 16 F -0.156 7.156 17 F -0.160 7.160 18 N -0.595 5.595 19 C -0.230 4.230 20 H 0.061 0.939 21 C -0.031 4.031 22 N -0.925 5.925 23 Si 0.933 3.067 24 H -0.304 1.304 25 H -0.294 1.294 26 H -0.262 1.262 27 C 0.198 3.802 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.415 0.585 41 H 0.118 0.882 42 H 0.162 0.838 43 H 0.246 0.754 44 H -0.006 1.006 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -3.031 4.498 5.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.187 4.187 4 C -0.128 4.128 5 C -0.164 4.164 6 C 0.055 3.945 7 H 0.049 0.951 8 C 0.017 3.983 9 N -0.331 5.331 10 C 0.316 3.684 11 O -0.461 6.461 12 C -0.211 4.211 13 H 0.191 0.809 14 C -0.171 4.171 15 C 0.177 3.823 16 F -0.137 7.137 17 F -0.140 7.140 18 N -0.319 5.319 19 C -0.360 4.360 20 H 0.078 0.922 21 C -0.227 4.227 22 N -0.571 5.571 23 Si 0.763 3.237 24 H -0.232 1.232 25 H -0.220 1.220 26 H -0.187 1.187 27 C 0.072 3.928 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.253 0.747 41 H 0.136 0.864 42 H 0.180 0.820 43 H 0.055 0.945 44 H 0.012 0.988 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.058 -3.396 4.899 6.054 hybrid contribution -0.260 -0.039 -1.398 1.423 sum 0.798 -3.435 3.501 4.969 Atomic orbital electron populations 1.21605 0.95076 1.00955 0.99714 1.21237 0.95759 0.95366 0.97064 1.21711 1.00528 0.95183 1.01268 1.21385 0.99631 0.94999 0.96834 1.21957 1.00934 0.96305 0.97254 1.20860 0.95949 0.89296 0.88417 0.95115 1.21272 0.98366 0.91894 0.86809 1.45919 1.46353 1.13680 1.27137 1.19562 0.81155 0.82103 0.85629 1.90709 1.36412 1.68252 1.50725 1.23688 1.04570 0.94965 0.97859 0.80878 1.24421 1.01030 0.93328 0.98308 1.19691 0.88225 0.81147 0.93198 1.93029 1.68720 1.67945 1.83970 1.93062 1.66360 1.88434 1.66184 1.44172 1.65188 1.06306 1.16202 1.19154 1.14324 1.17456 0.85078 0.92165 1.25534 0.97698 1.00711 0.98770 1.70100 1.29801 1.39088 1.18159 0.85788 0.78727 0.78822 0.80336 1.23229 1.22045 1.18659 1.20655 0.94196 0.83434 0.94485 0.92382 0.95302 0.93457 0.93086 0.94028 0.91479 0.91066 0.92810 0.92174 0.90425 0.91090 0.93450 0.74714 0.86395 0.81978 0.94468 0.98809 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.99 71.98 0.58 -3.28 16 2 C -0.09 -3.06 0.77 -51.96 -0.04 -3.10 16 3 C -0.13 -3.71 8.48 71.98 0.61 -3.10 16 4 C -0.09 -2.57 4.71 30.62 0.14 -2.43 16 5 C -0.13 -3.66 5.03 30.67 0.15 -3.50 16 6 C 0.16 5.61 3.01 44.98 0.14 5.75 16 7 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 8 C 0.14 4.88 4.43 86.38 0.38 5.27 16 9 N -0.68 -23.91 3.87 -463.06 -1.79 -25.70 16 10 C 0.53 18.76 7.61 87.66 0.67 19.43 16 11 O -0.58 -24.29 15.14 -3.02 -0.05 -24.33 16 12 C -0.19 -5.30 6.17 -11.54 -0.07 -5.37 16 13 H 0.17 3.81 8.14 -2.39 -0.02 3.79 16 14 C -0.13 -3.35 10.21 30.62 0.31 -3.03 16 15 C 0.21 6.13 5.19 30.62 0.16 6.29 16 16 F -0.16 -4.16 17.60 44.97 0.79 -3.37 16 17 F -0.16 -5.58 15.71 44.97 0.71 -4.87 16 18 N -0.59 -24.96 2.40 -674.41 -1.62 -26.58 16 19 C -0.23 -10.61 6.90 84.03 0.58 -10.03 16 20 H 0.06 2.88 5.93 -2.91 -0.02 2.87 16 21 C -0.03 -1.50 5.05 84.86 0.43 -1.07 16 22 N -0.93 -48.40 11.12 21.65 0.24 -48.16 16 23 Si 0.93 40.46 29.57 68.60 2.03 42.48 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.20 8.41 3.97 86.51 0.34 8.75 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.73 5.97 -2.39 -0.01 1.71 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.06 1.85 6.33 -2.39 -0.02 1.84 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.05 1.84 7.42 -2.39 -0.02 1.82 16 40 H 0.42 14.98 7.38 -92.71 -0.68 14.30 16 41 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.16 3.00 8.14 -2.38 -0.02 2.98 16 43 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.05 2.49 6.18 -2.39 -0.01 2.48 16 Total: -1.00 -58.24 357.78 5.01 -53.23 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.31 Total: 26.75 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.38 Total: 10.56 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -3.17 Total: -100.44 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 1.50 Total: -8.24 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -58.24 5.01 -53.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.969 kcal (2) G-P(sol) polarization free energy of solvation -58.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds