Wall clock time and date at job start Tue Mar 31 2020 11:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.49270 * 2 1 4 4 C 1.53039 * 109.50180 * 120.06533 * 2 1 3 5 5 C 1.53041 * 109.53455 * 58.58733 * 4 2 1 6 6 C 1.53192 * 109.31295 * 61.36783 * 5 4 2 7 7 H 1.09000 * 109.59191 * 65.28957 * 6 5 4 8 8 C 1.52999 * 109.59017 * 185.57722 * 6 5 4 9 9 N 1.46493 * 109.47499 * 179.97438 * 8 6 5 10 10 C 1.34770 * 120.00359 * 179.97438 * 9 8 6 11 11 O 1.21287 * 119.99921 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00580 * 179.97438 * 10 9 8 13 13 H 1.09005 * 115.55049 * 34.41667 * 12 10 9 14 14 C 1.52997 * 117.50307 * 180.08814 * 12 10 9 15 15 C 1.53002 * 60.00214 * 107.51494 * 14 12 10 16 16 F 1.39899 * 117.49617 * 252.51269 * 15 14 12 17 17 F 1.39901 * 117.49829 * 107.49188 * 15 14 12 18 18 N 1.46931 * 108.77684 * 305.36373 * 6 5 4 19 19 C 1.36937 * 120.63091 * 233.61008 * 18 6 5 20 20 H 1.08005 * 119.99852 * 49.47513 * 19 18 6 21 21 C 1.38813 * 119.99841 * 229.46937 * 19 18 6 22 22 N 1.31619 * 120.00002 * 188.63911 * 21 19 18 23 23 Si 1.86796 * 120.00082 * 8.65009 * 21 19 18 24 24 H 1.48497 * 109.47354 * 84.42091 * 23 21 19 25 25 H 1.48500 * 109.47014 * 204.42380 * 23 21 19 26 26 H 1.48508 * 109.46857 * 324.41906 * 23 21 19 27 27 C 1.46930 * 118.73827 * 53.60545 * 18 6 5 28 28 H 1.09004 * 109.47416 * 299.92896 * 1 2 3 29 29 H 1.08996 * 109.47588 * 59.93520 * 1 2 3 30 30 H 1.09006 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46709 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47487 * 300.06465 * 3 2 1 33 33 H 1.08997 * 109.47052 * 60.07002 * 3 2 1 34 34 H 1.09000 * 109.45857 * 298.56926 * 4 2 1 35 35 H 1.08995 * 109.45978 * 178.60542 * 4 2 1 36 36 H 1.09001 * 109.50020 * 301.41572 * 5 4 2 37 37 H 1.09004 * 109.49656 * 181.31412 * 5 4 2 38 38 H 1.08991 * 109.46950 * 59.92520 * 8 6 5 39 39 H 1.09000 * 109.46920 * 299.92972 * 8 6 5 40 40 H 0.97006 * 119.99840 * 359.97438 * 9 8 6 41 41 H 1.09004 * 117.50326 * 215.00154 * 14 12 10 42 42 H 1.09003 * 117.49877 * 359.97438 * 14 12 10 43 43 H 0.96990 * 120.00068 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.58549 * 186.60872 * 27 18 6 45 45 H 1.08998 * 109.70112 * 66.25245 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 1.5031 -2.1554 1.2665 6 6 2.0141 -2.9039 0.0314 7 1 3.0978 -3.0064 0.0885 8 6 1.3705 -4.2906 -0.0308 9 7 1.8603 -5.0038 -1.2129 10 6 1.4273 -6.2531 -1.4737 11 8 0.6316 -6.7868 -0.7300 12 6 1.9308 -6.9866 -2.6901 13 1 2.9652 -6.7831 -2.9672 14 6 1.3999 -8.4010 -2.9322 15 6 0.9344 -7.2464 -3.8217 16 9 -0.3748 -6.7847 -3.6483 17 9 1.4206 -7.2045 -5.1329 18 7 1.6516 -2.1384 -1.1691 19 6 0.9636 -2.7318 -2.1937 20 1 0.0710 -3.3031 -1.9851 21 6 1.4133 -2.5990 -3.5002 22 7 0.6671 -3.0208 -4.4991 23 14 3.0775 -1.8220 -3.8408 24 1 4.1395 -2.8526 -3.7178 25 1 3.0895 -1.2604 -5.2154 26 1 3.3263 -0.7351 -2.8598 27 6 2.0413 -0.7240 -1.2495 28 1 -0.3634 0.5127 0.8906 29 1 -0.3634 0.5148 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1306 1.4419 -0.0005 32 1 1.6765 1.9567 -0.8893 33 1 1.6784 1.9560 0.8906 34 1 1.6988 -0.1952 2.1389 35 1 3.1305 -0.7440 1.2354 36 1 0.4133 -2.1352 1.2546 37 1 1.8482 -2.6623 2.1677 38 1 0.2873 -4.1859 -0.0917 39 1 1.6313 -4.8527 0.8659 40 1 2.4964 -4.5768 -1.8079 41 1 2.0849 -9.1279 -3.3686 42 1 0.6867 -8.8011 -2.2115 43 1 0.9815 -2.9283 -5.4120 44 1 1.6006 -0.2735 -2.1389 45 1 3.1272 -0.6443 -1.2993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089639833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:04 Heat of formation + Delta-G solvation = -82.569990 kcal Electronic energy + Delta-G solvation = -28884.925457 eV Core-core repulsion = 24767.914365 eV Total energy + Delta-G solvation = -4117.011091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.23129 -46.89414 -39.49282 -38.69349 -35.61402 -34.82325 -33.13645 -32.22343 -30.81166 -27.88955 -26.78808 -25.55889 -24.74560 -22.76800 -22.38399 -22.17859 -20.14395 -19.56465 -18.40130 -17.81187 -16.95635 -16.40961 -15.80841 -15.58709 -15.39345 -15.17818 -14.74484 -14.17912 -13.94946 -13.68902 -13.58124 -13.48189 -13.39407 -13.23447 -13.02984 -12.92210 -12.62311 -12.39144 -12.05574 -11.83979 -11.57826 -11.56403 -11.37105 -11.14364 -10.96616 -10.87363 -10.77688 -10.62598 -10.37987 -9.93242 -9.86718 -9.72851 -9.60504 -9.35789 -9.27439 -8.56303 -8.22674 -6.63109 -5.99877 -3.62973 2.69704 3.23327 3.25778 3.39081 3.42119 3.61840 3.96025 4.45878 4.46664 4.74443 4.86206 4.98363 5.15744 5.22900 5.28456 5.33676 5.38692 5.54840 5.59524 5.71034 5.82655 5.84774 5.96465 5.99866 6.01515 6.05024 6.15139 6.20921 6.29202 6.30907 6.33327 6.38032 6.51977 6.59170 6.71150 6.74730 6.85302 6.92635 7.09092 7.15386 8.06251 8.20791 8.43943 8.81486 8.91609 9.62224 10.10504 11.12410 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.005308 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.325512 B = 5273.573339 C = 6236.381560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.096 4.096 5 C -0.131 4.131 6 C 0.160 3.840 7 H 0.034 0.966 8 C 0.140 3.860 9 N -0.677 5.677 10 C 0.543 3.457 11 O -0.554 6.554 12 C -0.190 4.190 13 H 0.140 0.860 14 C -0.151 4.151 15 C 0.237 3.763 16 F -0.143 7.143 17 F -0.158 7.158 18 N -0.601 5.601 19 C -0.266 4.266 20 H 0.076 0.924 21 C 0.046 3.954 22 N -0.894 5.894 23 Si 0.842 3.158 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.236 1.236 27 C 0.152 3.848 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.410 0.590 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -2.049 7.052 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.195 4.195 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.052 0.948 8 C 0.016 3.984 9 N -0.326 5.326 10 C 0.327 3.673 11 O -0.434 6.434 12 C -0.212 4.212 13 H 0.158 0.842 14 C -0.189 4.189 15 C 0.199 3.801 16 F -0.123 7.123 17 F -0.139 7.139 18 N -0.326 5.326 19 C -0.395 4.395 20 H 0.094 0.906 21 C -0.156 4.156 22 N -0.534 5.534 23 Si 0.671 3.329 24 H -0.214 1.214 25 H -0.227 1.227 26 H -0.160 1.160 27 C 0.027 3.973 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.247 0.753 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.801 -2.406 7.338 9.093 hybrid contribution 1.166 0.924 -1.069 1.832 sum 5.967 -1.481 6.268 8.780 Atomic orbital electron populations 1.21715 0.94471 1.02542 0.99594 1.21125 0.96352 0.94197 0.97377 1.21813 1.00328 0.96430 1.00965 1.21406 0.99571 0.95483 0.96877 1.21993 1.01664 0.95786 0.97555 1.20847 0.95947 0.89754 0.88126 0.94815 1.21233 0.99926 0.91061 0.86200 1.45730 1.45949 1.13435 1.27474 1.18945 0.81457 0.82107 0.84764 1.90643 1.34833 1.68181 1.49780 1.23599 1.01275 0.99625 0.96675 0.84178 1.24273 1.03219 0.91270 1.00167 1.19459 0.79660 1.03244 0.77705 1.93110 1.34826 1.89561 1.94823 1.93029 1.87041 1.96862 1.36940 1.44303 1.66156 1.04759 1.17353 1.18627 1.05764 1.30633 0.84447 0.90625 1.25747 0.96873 0.96806 0.96199 1.69787 1.37054 1.47578 0.98934 0.87745 0.85940 0.81510 0.77748 1.21425 1.22737 1.16049 1.21717 0.96144 0.84775 0.94714 0.94678 0.93448 0.91253 0.93343 0.92987 0.93443 0.93167 0.92884 0.91262 0.92775 0.91216 0.92562 0.75272 0.85735 0.85024 0.92673 0.91812 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.98 37.16 0.30 -1.77 16 2 C -0.09 -1.41 0.77 -154.39 -0.12 -1.53 16 3 C -0.14 -1.90 8.48 37.16 0.32 -1.58 16 4 C -0.10 -1.37 4.71 -26.69 -0.13 -1.50 16 5 C -0.13 -1.96 5.03 -26.61 -0.13 -2.09 16 6 C 0.16 2.78 3.01 -67.60 -0.20 2.57 16 7 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.14 2.54 4.49 -4.05 -0.02 2.52 16 9 N -0.68 -13.02 4.15 -60.30 -0.25 -13.27 16 10 C 0.54 10.55 7.25 -10.99 -0.08 10.47 16 11 O -0.55 -11.98 16.26 5.55 0.09 -11.89 16 12 C -0.19 -3.12 6.17 -91.77 -0.57 -3.68 16 13 H 0.14 1.95 8.14 -51.93 -0.42 1.52 16 14 C -0.15 -2.04 10.01 -26.73 -0.27 -2.31 16 15 C 0.24 4.27 5.20 -26.73 -0.14 4.13 16 16 F -0.14 -3.12 17.13 2.25 0.04 -3.08 16 17 F -0.16 -2.90 17.60 2.25 0.04 -2.86 16 18 N -0.60 -12.25 1.85 -164.77 -0.30 -12.55 16 19 C -0.27 -6.49 6.63 -15.06 -0.10 -6.59 16 20 H 0.08 2.15 7.10 -52.48 -0.37 1.78 16 21 C 0.05 1.20 5.30 -17.43 -0.09 1.10 16 22 N -0.89 -25.58 13.97 55.49 0.78 -24.80 16 23 Si 0.84 19.40 26.63 -169.99 -4.53 14.88 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.24 -5.00 3.87 56.52 0.22 -4.78 16 27 C 0.15 2.92 2.70 -3.71 -0.01 2.91 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.10 6.33 -51.93 -0.33 0.77 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.44 7.44 -51.93 -0.39 1.06 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.41 8.12 7.38 -40.82 -0.30 7.82 16 41 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.13 1.80 7.67 -51.93 -0.40 1.41 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.37 6.50 -51.93 -0.34 1.03 16 45 H 0.03 0.56 6.35 -51.93 -0.33 0.24 16 LS Contribution 354.19 15.07 5.34 5.34 Total: -1.00 -29.30 354.19 -7.20 -36.50 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.16 Total: 9.08 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.24 Total: 2.65 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.22 Total: -50.62 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.08 Total: -5.94 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.53 Total: 14.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.30 -7.20 -36.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.068 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds