Wall clock time and date at job start Tue Mar 31 2020 11:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.49270 * 2 1 4 4 C 1.53039 * 109.50180 * 120.06533 * 2 1 3 5 5 C 1.53041 * 109.53455 * 58.58733 * 4 2 1 6 6 C 1.53192 * 109.31295 * 61.36783 * 5 4 2 7 7 H 1.09000 * 109.59191 * 65.28957 * 6 5 4 8 8 C 1.52999 * 109.59017 * 185.57722 * 6 5 4 9 9 N 1.46493 * 109.47499 * 179.97438 * 8 6 5 10 10 C 1.34770 * 120.00359 * 179.97438 * 9 8 6 11 11 O 1.21287 * 119.99921 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00580 * 179.97438 * 10 9 8 13 13 H 1.09005 * 115.55049 * 34.41667 * 12 10 9 14 14 C 1.52997 * 117.50307 * 180.08814 * 12 10 9 15 15 C 1.53002 * 60.00214 * 107.51494 * 14 12 10 16 16 F 1.39899 * 117.49617 * 252.51269 * 15 14 12 17 17 F 1.39901 * 117.49829 * 107.49188 * 15 14 12 18 18 N 1.46931 * 108.77684 * 305.36373 * 6 5 4 19 19 C 1.36937 * 120.63091 * 233.61008 * 18 6 5 20 20 H 1.08005 * 119.99852 * 49.47513 * 19 18 6 21 21 C 1.38813 * 119.99841 * 229.46937 * 19 18 6 22 22 N 1.31619 * 120.00002 * 188.63911 * 21 19 18 23 23 Si 1.86796 * 120.00082 * 8.65009 * 21 19 18 24 24 H 1.48497 * 109.47354 * 84.42091 * 23 21 19 25 25 H 1.48500 * 109.47014 * 204.42380 * 23 21 19 26 26 H 1.48508 * 109.46857 * 324.41906 * 23 21 19 27 27 C 1.46930 * 118.73827 * 53.60545 * 18 6 5 28 28 H 1.09004 * 109.47416 * 299.92896 * 1 2 3 29 29 H 1.08996 * 109.47588 * 59.93520 * 1 2 3 30 30 H 1.09006 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46709 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47487 * 300.06465 * 3 2 1 33 33 H 1.08997 * 109.47052 * 60.07002 * 3 2 1 34 34 H 1.09000 * 109.45857 * 298.56926 * 4 2 1 35 35 H 1.08995 * 109.45978 * 178.60542 * 4 2 1 36 36 H 1.09001 * 109.50020 * 301.41572 * 5 4 2 37 37 H 1.09004 * 109.49656 * 181.31412 * 5 4 2 38 38 H 1.08991 * 109.46950 * 59.92520 * 8 6 5 39 39 H 1.09000 * 109.46920 * 299.92972 * 8 6 5 40 40 H 0.97006 * 119.99840 * 359.97438 * 9 8 6 41 41 H 1.09004 * 117.50326 * 215.00154 * 14 12 10 42 42 H 1.09003 * 117.49877 * 359.97438 * 14 12 10 43 43 H 0.96990 * 120.00068 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.58549 * 186.60872 * 27 18 6 45 45 H 1.08998 * 109.70112 * 66.25245 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 1.5031 -2.1554 1.2665 6 6 2.0141 -2.9039 0.0314 7 1 3.0978 -3.0064 0.0885 8 6 1.3705 -4.2906 -0.0308 9 7 1.8603 -5.0038 -1.2129 10 6 1.4273 -6.2531 -1.4737 11 8 0.6316 -6.7868 -0.7300 12 6 1.9308 -6.9866 -2.6901 13 1 2.9652 -6.7831 -2.9672 14 6 1.3999 -8.4010 -2.9322 15 6 0.9344 -7.2464 -3.8217 16 9 -0.3748 -6.7847 -3.6483 17 9 1.4206 -7.2045 -5.1329 18 7 1.6516 -2.1384 -1.1691 19 6 0.9636 -2.7318 -2.1937 20 1 0.0710 -3.3031 -1.9851 21 6 1.4133 -2.5990 -3.5002 22 7 0.6671 -3.0208 -4.4991 23 14 3.0775 -1.8220 -3.8408 24 1 4.1395 -2.8526 -3.7178 25 1 3.0895 -1.2604 -5.2154 26 1 3.3263 -0.7351 -2.8598 27 6 2.0413 -0.7240 -1.2495 28 1 -0.3634 0.5127 0.8906 29 1 -0.3634 0.5148 -0.8893 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1306 1.4419 -0.0005 32 1 1.6765 1.9567 -0.8893 33 1 1.6784 1.9560 0.8906 34 1 1.6988 -0.1952 2.1389 35 1 3.1305 -0.7440 1.2354 36 1 0.4133 -2.1352 1.2546 37 1 1.8482 -2.6623 2.1677 38 1 0.2873 -4.1859 -0.0917 39 1 1.6313 -4.8527 0.8659 40 1 2.4964 -4.5768 -1.8079 41 1 2.0849 -9.1279 -3.3686 42 1 0.6867 -8.8011 -2.2115 43 1 0.9815 -2.9283 -5.4120 44 1 1.6006 -0.2735 -2.1389 45 1 3.1272 -0.6443 -1.2993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089639833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:02 Heat of formation + Delta-G solvation = -100.302214 kcal Electronic energy + Delta-G solvation = -28885.694384 eV Core-core repulsion = 24767.914365 eV Total energy + Delta-G solvation = -4117.780018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.69272 -48.40026 -41.00345 -40.13454 -36.99378 -36.28368 -34.90109 -33.74099 -32.51979 -29.24830 -28.07159 -27.27605 -26.12773 -24.38942 -23.67773 -23.51725 -21.71398 -21.04551 -19.84753 -19.29525 -18.47101 -18.04990 -17.32501 -17.11034 -16.94749 -16.75249 -16.33356 -15.57876 -15.41312 -15.22891 -15.04075 -14.94958 -14.79940 -14.65923 -14.53401 -14.50578 -14.16098 -13.97091 -13.33666 -13.22768 -13.03088 -12.81979 -12.74537 -12.67449 -12.53682 -12.32470 -12.22707 -12.05684 -11.93090 -11.44143 -11.25806 -11.19883 -11.06174 -10.93611 -10.79723 -10.40879 -9.86067 -8.38656 -8.03879 -5.64329 1.22340 1.40130 1.49153 1.54483 1.94712 2.19748 2.51642 2.56851 3.20288 3.21027 3.33323 3.47960 3.61098 3.91101 3.93394 3.98417 4.10888 4.28874 4.37848 4.47136 4.48789 4.56778 4.62510 4.74137 4.78930 4.82886 4.88759 4.91733 5.01582 5.06937 5.09159 5.14160 5.15733 5.22695 5.32031 5.48416 5.49483 5.58408 5.63303 5.77245 6.06284 6.39259 6.63043 7.09497 7.25485 7.68260 8.19330 9.11683 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.005308 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.325512 B = 5273.573339 C = 6236.381560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.091 4.091 5 C -0.126 4.126 6 C 0.160 3.840 7 H 0.055 0.945 8 C 0.142 3.858 9 N -0.680 5.680 10 C 0.534 3.466 11 O -0.582 6.582 12 C -0.197 4.197 13 H 0.168 0.832 14 C -0.099 4.099 15 C 0.193 3.807 16 F -0.177 7.177 17 F -0.165 7.165 18 N -0.609 5.609 19 C -0.226 4.226 20 H 0.023 0.977 21 C -0.004 4.004 22 N -0.949 5.949 23 Si 0.894 3.106 24 H -0.279 1.279 25 H -0.323 1.323 26 H -0.202 1.202 27 C 0.148 3.852 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.033 0.967 39 H 0.080 0.920 40 H 0.408 0.592 41 H 0.175 0.825 42 H 0.132 0.868 43 H 0.255 0.745 44 H 0.035 0.965 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.353 -1.518 9.666 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.191 4.191 4 C -0.128 4.128 5 C -0.165 4.165 6 C 0.054 3.946 7 H 0.072 0.928 8 C 0.018 3.982 9 N -0.328 5.328 10 C 0.320 3.680 11 O -0.464 6.464 12 C -0.219 4.219 13 H 0.186 0.814 14 C -0.137 4.137 15 C 0.156 3.844 16 F -0.158 7.158 17 F -0.145 7.145 18 N -0.335 5.335 19 C -0.357 4.357 20 H 0.041 0.959 21 C -0.201 4.201 22 N -0.592 5.592 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.252 1.252 26 H -0.126 1.126 27 C 0.023 3.977 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.244 0.756 41 H 0.192 0.808 42 H 0.150 0.850 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.759 -1.854 10.012 12.802 hybrid contribution 0.134 0.762 -1.798 1.957 sum 7.893 -1.093 8.214 11.444 Atomic orbital electron populations 1.21652 0.95377 1.00775 1.00010 1.21073 0.95533 0.95695 0.96502 1.21768 1.01058 0.94512 1.01748 1.21400 1.00325 0.94471 0.96614 1.21954 1.00773 0.96599 0.97191 1.21029 0.96870 0.88942 0.87719 0.92786 1.21267 0.97824 0.92273 0.86849 1.45813 1.45724 1.13562 1.27679 1.19484 0.80925 0.82186 0.85399 1.90615 1.35903 1.68810 1.51038 1.23760 1.02017 1.01708 0.94440 0.81433 1.24464 1.02148 0.90093 0.96971 1.20149 0.78734 1.07468 0.78071 1.93027 1.37316 1.90419 1.95008 1.93001 1.86916 1.97149 1.37455 1.44350 1.65900 1.05855 1.17351 1.18125 1.03650 1.28467 0.85440 0.95904 1.26261 0.99969 0.98018 0.95864 1.69971 1.39215 1.50977 0.99037 0.86918 0.82121 0.81815 0.76915 1.20566 1.25239 1.12571 1.21708 0.96363 0.83922 0.95661 0.92103 0.95174 0.94093 0.92129 0.93710 0.91287 0.90682 0.91468 0.92831 0.89748 0.94876 0.90238 0.75613 0.80769 0.85030 0.93601 0.94655 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 7.98 71.98 0.57 -3.27 16 2 C -0.09 -2.51 0.77 -52.10 -0.04 -2.55 16 3 C -0.13 -3.16 8.48 71.98 0.61 -2.55 16 4 C -0.09 -2.19 4.71 30.62 0.14 -2.05 16 5 C -0.13 -3.40 5.03 30.67 0.15 -3.24 16 6 C 0.16 5.28 3.01 44.97 0.14 5.41 16 7 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 8 C 0.14 5.16 4.49 86.38 0.39 5.55 16 9 N -0.68 -26.40 4.15 -463.09 -1.92 -28.32 16 10 C 0.53 20.99 7.25 87.66 0.64 21.63 16 11 O -0.58 -25.57 16.26 -3.05 -0.05 -25.62 16 12 C -0.20 -6.35 6.17 -11.54 -0.07 -6.42 16 13 H 0.17 4.34 8.14 -2.38 -0.02 4.32 16 14 C -0.10 -2.48 10.01 30.59 0.31 -2.17 16 15 C 0.19 7.07 5.20 30.60 0.16 7.22 16 16 F -0.18 -8.20 17.13 44.97 0.77 -7.43 16 17 F -0.16 -6.14 17.60 44.97 0.79 -5.35 16 18 N -0.61 -24.59 1.85 -675.20 -1.25 -25.84 16 19 C -0.23 -11.50 6.63 84.03 0.56 -10.95 16 20 H 0.02 1.42 7.10 -2.91 -0.02 1.40 16 21 C 0.00 -0.22 5.30 84.86 0.45 0.23 16 22 N -0.95 -57.48 13.97 21.65 0.30 -57.18 16 23 Si 0.89 40.43 26.63 68.60 1.83 42.26 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 26 H -0.20 -7.99 3.87 99.48 0.39 -7.61 16 27 C 0.15 5.44 2.70 86.36 0.23 5.67 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 1.52 5.97 -2.38 -0.01 1.50 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 1.63 6.33 -2.39 -0.02 1.62 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.03 1.44 7.44 -2.39 -0.02 1.42 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.41 16.14 7.38 -92.70 -0.68 15.45 16 41 H 0.17 2.62 8.14 -2.38 -0.02 2.60 16 42 H 0.13 3.37 7.67 -2.39 -0.02 3.36 16 43 H 0.26 15.13 8.31 -92.72 -0.77 14.36 16 44 H 0.03 1.49 6.50 -2.39 -0.02 1.47 16 45 H 0.04 1.36 6.35 -2.39 -0.02 1.35 16 Total: -1.00 -69.82 354.19 4.70 -65.11 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.01 Total: 29.85 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 4.24 Total: 12.51 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -2.87 Total: -111.34 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 1.56 Total: -12.78 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.83 Total: 42.26 kcal Total: -69.82 4.70 -65.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089639833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.189 kcal (2) G-P(sol) polarization free energy of solvation -69.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds