Wall clock time and date at job start Tue Mar 31 2020 10:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99701 * 2 1 4 4 H 1.48506 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99609 * 3 2 1 6 6 H 1.48496 * 109.47598 * 59.99892 * 3 2 1 7 7 C 1.38804 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00437 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99984 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61197 * 204.99839 * 10 9 7 12 12 C 1.53777 * 87.07979 * 220.01828 * 11 10 9 13 13 C 1.53005 * 113.61054 * 139.98299 * 12 11 10 14 14 N 1.46505 * 109.46784 * 176.52702 * 13 12 11 15 15 C 1.34777 * 120.00115 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99593 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00369 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.46862 * 300.00562 * 17 15 14 19 19 C 1.52997 * 109.47466 * 180.02562 * 17 15 14 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 17 15 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 17 22 22 C 1.53002 * 109.46891 * 299.99597 * 21 20 19 23 23 F 1.39905 * 109.47101 * 180.02562 * 22 21 20 24 24 F 1.39900 * 109.47321 * 299.99994 * 22 21 20 25 25 C 1.52997 * 109.46978 * 60.00410 * 22 21 20 26 26 C 1.53773 * 87.17575 * 25.39176 * 12 11 10 27 27 H 0.96999 * 120.00019 * 0.02562 * 1 2 3 28 28 H 0.96993 * 119.99928 * 359.97438 * 9 7 2 29 29 H 1.08996 * 112.90582 * 336.24912 * 10 9 7 30 30 H 1.08998 * 113.61474 * 105.46855 * 11 10 9 31 31 H 1.09009 * 113.69166 * 334.58107 * 11 10 9 32 32 H 1.09003 * 113.61590 * 270.79414 * 12 11 10 33 33 H 1.09002 * 109.47193 * 56.53260 * 13 12 11 34 34 H 1.08992 * 109.47333 * 296.52258 * 13 12 11 35 35 H 0.97003 * 120.00244 * 359.97438 * 14 13 12 36 36 H 1.09002 * 109.47153 * 59.99773 * 19 17 15 37 37 H 1.09001 * 109.46832 * 299.99964 * 19 17 15 38 38 H 1.09004 * 109.46724 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.47194 * 299.99650 * 20 19 17 40 40 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 41 41 H 1.09004 * 109.47108 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47375 * 59.99908 * 25 22 21 43 43 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 44 44 H 1.08997 * 113.61648 * 89.15402 * 26 12 11 45 45 H 1.09001 * 113.61506 * 220.06215 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.2607 -4.8290 -0.5939 12 6 1.8477 -5.6973 0.5314 13 6 0.8441 -6.6846 1.1306 14 7 1.5165 -7.5179 2.1306 15 6 0.8243 -8.4651 2.7940 16 8 -0.3551 -8.6279 2.5629 17 6 1.5157 -9.3218 3.8231 18 1 2.3289 -9.8725 3.3502 19 6 0.5123 -10.3092 4.4222 20 6 1.2142 -11.1786 5.4674 21 6 1.7774 -10.2879 6.5765 22 6 2.7810 -9.3005 5.9774 23 9 3.2965 -8.4864 6.9918 24 9 3.8253 -10.0070 5.3712 25 6 2.0791 -8.4311 4.9323 26 6 2.0002 -4.4027 1.3472 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 3.0665 -3.5648 -0.4020 30 1 1.5930 -5.1218 -1.5898 31 1 0.1801 -4.7016 -0.5286 32 1 2.7978 -6.1645 0.2721 33 1 0.4422 -7.3187 0.3403 34 1 0.0311 -6.1342 1.6037 35 1 2.4599 -7.3879 2.3152 36 1 0.1106 -10.9435 3.6319 37 1 -0.3011 -9.7588 4.8949 38 1 0.4994 -11.8824 5.8938 39 1 2.0278 -11.7291 4.9950 40 1 0.9639 -9.7375 7.0489 41 1 2.2771 -10.9074 7.3214 42 1 1.2655 -7.8806 5.4047 43 1 2.7939 -7.7273 4.5058 44 1 1.1224 -4.1573 1.9449 45 1 2.9286 -4.3518 1.9160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091230189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:49 Heat of formation + Delta-G solvation = -132.617583 kcal Electronic energy + Delta-G solvation = -26522.244573 eV Core-core repulsion = 22403.063255 eV Total energy + Delta-G solvation = -4119.181318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.33456 -47.31530 -40.34281 -38.66504 -37.33932 -34.78776 -33.35724 -31.96416 -30.33742 -30.23445 -27.47250 -25.12893 -24.51086 -23.71484 -23.08621 -21.14529 -20.98292 -20.16431 -19.08747 -18.03593 -17.28704 -17.07629 -16.77375 -16.59488 -16.10558 -15.67373 -15.05358 -14.85004 -14.59200 -14.49719 -14.12349 -13.88632 -13.64068 -13.61837 -13.44903 -13.17430 -13.10934 -12.85249 -12.68940 -12.22916 -11.91723 -11.83597 -11.74804 -11.43334 -11.31270 -11.25163 -11.20636 -10.89933 -10.86977 -10.54119 -10.27964 -10.12852 -9.85794 -9.83706 -9.50684 -9.09725 -8.89311 -6.98437 -5.80349 -3.09323 2.41452 2.98051 3.36099 3.41147 3.46793 3.49102 3.62844 3.84890 3.90863 4.37282 4.43651 4.51100 4.56540 4.66325 4.76366 4.86533 4.92205 4.94793 5.00472 5.19237 5.21401 5.34218 5.37693 5.41710 5.44422 5.47450 5.54636 5.71167 5.78346 5.81466 5.88453 5.90150 6.06500 6.21399 6.28077 6.32499 6.40374 6.56025 6.79578 7.08247 7.36281 7.67692 8.06586 8.38239 9.49384 10.07432 10.41543 11.42094 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.002378 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.715961 B =11770.638360 C =12550.254562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.723 5.723 15 C 0.516 3.484 16 O -0.537 6.537 17 C -0.105 4.105 18 H 0.106 0.894 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.160 4.160 22 C 0.292 3.708 23 F -0.199 7.199 24 F -0.198 7.198 25 C -0.153 4.153 26 C -0.162 4.162 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 -24.856 11.032 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.374 5.374 15 C 0.302 3.698 16 O -0.414 6.414 17 C -0.127 4.127 18 H 0.124 0.876 19 C -0.143 4.143 20 C -0.157 4.157 21 C -0.198 4.198 22 C 0.256 3.744 23 F -0.180 7.180 24 F -0.180 7.180 25 C -0.191 4.191 26 C -0.203 4.203 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.093 -24.759 10.839 27.336 hybrid contribution 0.845 1.087 0.203 1.392 sum 4.938 -23.672 11.042 26.583 Atomic orbital electron populations 1.69671 1.05146 1.25659 1.57526 1.24774 0.95530 0.97818 1.02837 0.86121 0.78790 0.84082 0.77210 1.20526 1.21826 1.21842 1.19345 0.91092 0.84226 1.42816 0.91048 1.42421 1.05774 0.99901 1.86959 1.21545 0.95312 0.85040 0.92711 1.23441 1.01039 0.97011 0.96689 1.22645 0.98383 0.94422 0.99262 1.21463 0.95465 0.92022 0.90238 1.46104 1.13872 1.36205 1.41244 1.20346 0.87183 0.80492 0.81813 1.90722 1.15600 1.68963 1.66097 1.21305 1.00086 0.96616 0.94691 0.87570 1.21447 0.97173 0.97000 0.98659 1.21547 1.00914 0.97782 0.95415 1.22565 0.98963 0.98346 0.99946 1.21008 0.83161 0.86413 0.83811 1.93034 1.88662 1.74434 1.61884 1.93000 1.61285 1.79729 1.83941 1.22523 1.02281 0.98303 0.95983 1.23979 1.01327 0.94974 0.99998 0.93480 0.78067 0.90672 0.91986 0.90104 0.89384 0.91706 0.91144 0.76570 0.90078 0.90442 0.89949 0.90756 0.88523 0.89322 0.87913 0.88748 0.90366 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.62 5.40 -52.55 -0.28 -17.91 16 10 C 0.17 3.15 4.48 -67.03 -0.30 2.85 16 11 C -0.14 -2.20 7.40 -25.92 -0.19 -2.40 16 12 C -0.13 -1.64 3.75 -89.81 -0.34 -1.97 16 13 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 14 N -0.72 -7.48 5.45 -60.29 -0.33 -7.81 16 15 C 0.52 5.75 7.15 -10.99 -0.08 5.67 16 16 O -0.54 -8.09 15.98 5.55 0.09 -8.00 16 17 C -0.11 -0.82 2.40 -91.77 -0.22 -1.04 16 18 H 0.11 0.71 7.80 -51.93 -0.41 0.31 16 19 C -0.10 -0.76 4.49 -26.73 -0.12 -0.88 16 20 C -0.12 -0.64 5.80 -26.73 -0.16 -0.79 16 21 C -0.16 -0.92 5.45 -26.73 -0.15 -1.07 16 22 C 0.29 2.28 2.10 -26.73 -0.06 2.22 16 23 F -0.20 -1.95 17.06 2.25 0.04 -1.91 16 24 F -0.20 -1.77 16.03 2.25 0.04 -1.74 16 25 C -0.15 -1.13 4.63 -26.73 -0.12 -1.25 16 26 C -0.16 -2.59 7.45 -25.83 -0.19 -2.78 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.39 10.16 7.93 -40.82 -0.32 9.84 16 29 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.32 8.08 -51.92 -0.42 0.90 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 35 H 0.40 3.24 7.89 -40.82 -0.32 2.92 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.40 7.80 -51.93 -0.41 -0.01 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.66 7.57 -51.93 -0.39 0.27 16 44 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -32.28 368.37 -8.66 -40.95 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.28 Total: 8.17 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.19 Total: -7.16 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.11 Total: -53.08 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.28 -8.66 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091230189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.672 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds