Wall clock time and date at job start Tue Mar 31 2020 11:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47499 * 2 1 4 4 C 1.50698 * 109.47171 * 120.00001 * 2 1 3 5 5 O 1.21283 * 119.99825 * 9.63260 * 4 2 1 6 6 N 1.34777 * 120.00373 * 189.62670 * 4 2 1 7 7 C 1.47201 * 126.70019 * 356.01863 * 6 4 2 8 8 C 1.53739 * 106.42489 * 211.36664 * 7 6 4 9 9 H 1.09003 * 112.28306 * 103.79571 * 8 7 6 10 10 C 1.54821 * 109.36677 * 229.34332 * 8 7 6 11 11 N 1.48333 * 104.14601 * 137.74499 * 10 8 7 12 12 C 1.36928 * 128.19969 * 138.19653 * 11 10 8 13 13 H 1.07995 * 120.00142 * 339.59592 * 12 11 10 14 14 C 1.38817 * 119.99989 * 159.59388 * 12 11 10 15 15 N 1.31626 * 119.99968 * 339.03769 * 14 12 11 16 16 Si 1.86800 * 120.00295 * 158.76076 * 14 12 11 17 17 H 1.48503 * 109.47220 * 89.99946 * 16 14 12 18 18 H 1.48493 * 109.47153 * 210.00178 * 16 14 12 19 19 H 1.48502 * 109.46858 * 330.00310 * 16 14 12 20 20 C 1.48343 * 103.60061 * 317.94051 * 11 10 8 21 21 C 1.54453 * 104.32483 * 42.02799 * 20 11 10 22 22 C 1.53001 * 112.29438 * 96.98791 * 21 20 11 23 23 C 1.47628 * 126.92992 * 175.43757 * 6 4 2 24 24 C 1.53004 * 109.47013 * 239.99806 * 2 1 3 25 25 F 1.39896 * 109.47532 * 305.48984 * 24 2 1 26 26 F 1.39902 * 109.47182 * 65.48906 * 24 2 1 27 27 H 1.09002 * 109.47114 * 300.00464 * 1 2 3 28 28 H 1.09002 * 109.46745 * 59.99769 * 1 2 3 29 29 H 1.08998 * 109.47176 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47364 * 191.51859 * 3 2 1 31 31 H 1.09007 * 109.46744 * 311.51950 * 3 2 1 32 32 H 1.08995 * 109.46797 * 71.51737 * 3 2 1 33 33 H 1.08997 * 110.06264 * 92.12392 * 7 6 4 34 34 H 1.09001 * 110.06553 * 330.60868 * 7 6 4 35 35 H 1.09006 * 110.57208 * 19.07959 * 10 8 7 36 36 H 1.08999 * 110.52251 * 256.38274 * 10 8 7 37 37 H 0.97002 * 119.99530 * 353.56998 * 15 14 12 38 38 H 1.08995 * 110.46251 * 160.74312 * 20 11 10 39 39 H 1.08998 * 110.45517 * 283.19358 * 20 11 10 40 40 H 1.09001 * 109.47030 * 61.01628 * 22 21 20 41 41 H 1.09002 * 109.47229 * 181.01239 * 22 21 20 42 42 H 1.09001 * 109.47323 * 301.01433 * 22 21 20 43 43 H 1.09000 * 109.49070 * 29.51181 * 23 6 4 44 44 H 1.09007 * 110.85822 * 267.85787 * 23 6 4 45 45 H 1.09002 * 109.47310 * 185.48689 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2581 -1.3211 1.9366 6 7 3.3419 -0.6673 1.5461 7 6 4.4170 -0.0442 0.7570 8 6 5.6863 -0.8696 1.0235 9 1 5.9331 -1.5287 0.1911 10 6 6.8509 0.0828 1.3888 11 7 7.5345 -0.5962 2.5165 12 6 8.8797 -0.7250 2.7372 13 1 9.5748 -0.6091 1.9188 14 6 9.3501 -1.0046 4.0130 15 7 8.5993 -0.7458 5.0626 16 14 11.0456 -1.7551 4.2397 17 1 12.0524 -0.6719 4.3752 18 1 11.0552 -2.5957 5.4638 19 1 11.3772 -2.5943 3.0603 20 6 6.4157 -1.0973 3.3518 21 6 5.3965 -1.6522 2.3326 22 6 5.5251 -3.1656 2.1483 23 6 3.9817 -1.2234 2.7547 24 6 2.0400 -0.7213 -1.2493 25 9 1.4735 -1.9988 -1.3141 26 9 1.6795 0.0070 -2.3881 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1105 1.4494 -0.2052 31 1 1.5189 2.0121 -0.7695 32 1 1.8540 1.8936 0.9746 33 1 4.5670 0.9867 1.0778 34 1 4.1675 -0.0736 -0.3037 35 1 6.4674 1.0532 1.7043 36 1 7.5305 0.1969 0.5443 37 1 7.7581 -0.2753 4.9530 38 1 6.7611 -1.8899 4.0155 39 1 5.9764 -0.2832 3.9282 40 1 5.3358 -3.6647 3.0987 41 1 4.7994 -3.5046 1.4091 42 1 6.5317 -3.4058 1.8060 43 1 3.4162 -2.0889 3.1001 44 1 4.0381 -0.4737 3.5440 45 1 3.1255 -0.8072 -1.2015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091994042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:08 Heat of formation + Delta-G solvation = -106.202973 kcal Electronic energy + Delta-G solvation = -28789.452336 eV Core-core repulsion = 24671.416442 eV Total energy + Delta-G solvation = -4118.035894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.29224 -47.23740 -40.78812 -38.88353 -35.62258 -35.21865 -32.72660 -31.52963 -29.59068 -27.87488 -27.03817 -26.53918 -25.80389 -25.31803 -23.18508 -21.57234 -20.71572 -19.42743 -18.72265 -17.83680 -17.59209 -17.37469 -17.28098 -16.18823 -15.58819 -15.28837 -14.76600 -14.36337 -14.11225 -14.01051 -13.80222 -13.66102 -13.59893 -13.58668 -13.13048 -13.02310 -12.83801 -12.70119 -12.58379 -12.31390 -12.20910 -11.91914 -11.89807 -11.56689 -11.27923 -11.23342 -10.81354 -10.72841 -10.55354 -10.32233 -10.26519 -10.15905 -10.01655 -9.86428 -9.44893 -8.75210 -8.60200 -7.09031 -6.17967 -3.27744 2.29838 2.75857 3.44404 3.44860 3.48838 3.63665 3.75608 3.90420 4.11535 4.46671 4.47717 4.58970 4.69750 4.75414 4.86665 4.96402 5.18740 5.21925 5.29941 5.33831 5.37376 5.40176 5.49101 5.49758 5.54817 5.70154 5.73256 5.80162 5.90115 5.92733 5.99196 6.02435 6.09657 6.28393 6.42668 6.48378 6.52411 6.69867 6.79658 6.94163 7.42818 7.62497 7.96490 8.34972 8.88149 9.69487 10.31096 11.17115 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.003532 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.787030 B = 7925.389389 C = 8119.317186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C -0.151 4.151 4 C 0.541 3.459 5 O -0.526 6.526 6 N -0.611 5.611 7 C 0.098 3.902 8 C -0.110 4.110 9 H 0.088 0.912 10 C 0.132 3.868 11 N -0.596 5.596 12 C -0.327 4.327 13 H 0.066 0.934 14 C -0.026 4.026 15 N -0.923 5.923 16 Si 1.071 2.929 17 H -0.294 1.294 18 H -0.285 1.285 19 H -0.292 1.292 20 C 0.147 3.853 21 C -0.088 4.088 22 C -0.120 4.120 23 C 0.116 3.884 24 C 0.269 3.731 25 F -0.196 7.196 26 F -0.196 7.196 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.052 0.948 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 2.605 -11.933 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.133 4.133 3 C -0.209 4.209 4 C 0.328 3.672 5 O -0.402 6.402 6 N -0.345 5.345 7 C -0.025 4.025 8 C -0.131 4.131 9 H 0.106 0.894 10 C 0.006 3.994 11 N -0.320 5.320 12 C -0.455 4.455 13 H 0.084 0.916 14 C -0.227 4.227 15 N -0.564 5.564 16 Si 0.901 3.099 17 H -0.221 1.221 18 H -0.211 1.211 19 H -0.219 1.219 20 C 0.020 3.980 21 C -0.090 4.090 22 C -0.177 4.177 23 C -0.006 4.006 24 C 0.215 3.785 25 F -0.177 7.177 26 F -0.178 7.178 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.002 1.624 -10.440 15.991 hybrid contribution -1.088 0.760 -1.300 1.858 sum -13.090 2.384 -11.741 17.745 Atomic orbital electron populations 1.21677 0.89908 1.04162 1.03090 1.21909 1.00600 0.98197 0.92609 1.22075 1.02616 0.91898 1.04268 1.19581 0.80755 0.80598 0.86295 1.90715 1.54587 1.42368 1.52506 1.48726 1.05719 1.56367 1.23638 1.22609 0.87082 0.97848 0.94937 1.23196 0.94434 0.97605 0.97881 0.89412 1.21893 0.92148 0.92742 0.92651 1.45144 1.01230 1.61124 1.24539 1.19772 0.80163 1.50012 0.95525 0.91629 1.25849 1.05280 1.00627 0.90922 1.70762 1.15195 1.39950 1.30466 0.83439 0.74462 0.76515 0.75517 1.22125 1.21085 1.21857 1.21869 0.87136 0.96784 0.92179 1.22395 0.93802 0.96025 0.96806 1.21572 1.01860 0.93166 1.01092 1.22346 0.92636 0.98948 0.86638 1.22013 0.98081 0.75579 0.82817 1.93015 1.87562 1.40516 1.96578 1.92986 1.93892 1.77693 1.53189 0.90818 0.91192 0.90776 0.90542 0.90336 0.90586 0.90223 0.91351 0.95580 0.92930 0.92043 0.91010 0.95478 0.92643 0.93598 0.91588 0.90343 0.90698 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 7.54 37.16 0.28 -1.09 16 2 C -0.13 -1.39 0.47 -155.66 -0.07 -1.46 16 3 C -0.15 -1.27 7.63 37.16 0.28 -0.99 16 4 C 0.54 7.60 6.43 -10.99 -0.07 7.53 16 5 O -0.53 -9.22 16.20 5.55 0.09 -9.13 16 6 N -0.61 -8.32 3.30 -171.30 -0.56 -8.88 16 7 C 0.10 1.16 4.45 -3.27 -0.01 1.14 16 8 C -0.11 -1.64 3.73 -88.09 -0.33 -1.97 16 9 H 0.09 1.25 7.93 -51.93 -0.41 0.84 16 10 C 0.13 2.41 6.78 -2.07 -0.01 2.40 16 11 N -0.60 -13.91 3.24 -168.24 -0.55 -14.46 16 12 C -0.33 -8.71 10.25 -15.06 -0.15 -8.87 16 13 H 0.07 1.74 7.91 -52.49 -0.42 1.32 16 14 C -0.03 -0.70 5.20 -17.43 -0.09 -0.79 16 15 N -0.92 -26.85 12.69 55.49 0.70 -26.15 16 16 Si 1.07 24.49 29.97 -169.99 -5.09 19.39 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.15 3.11 4.24 -2.26 -0.01 3.10 16 21 C -0.09 -1.45 1.08 -152.17 -0.16 -1.62 16 22 C -0.12 -1.91 8.61 37.16 0.32 -1.59 16 23 C 0.12 1.78 6.28 -3.04 -0.02 1.76 16 24 C 0.27 2.85 4.10 37.16 0.15 3.01 16 25 F -0.20 -2.54 16.44 2.25 0.04 -2.51 16 26 F -0.20 -2.05 16.53 2.25 0.04 -2.01 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.61 7.95 -51.93 -0.41 0.19 16 29 H 0.07 0.88 7.53 -51.93 -0.39 0.49 16 30 H 0.08 0.59 4.89 -51.93 -0.25 0.33 16 31 H 0.08 0.56 7.99 -51.93 -0.41 0.14 16 32 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.08 0.90 6.66 -51.93 -0.35 0.55 16 34 H 0.07 0.63 4.06 -51.93 -0.21 0.42 16 35 H 0.03 0.47 7.22 -51.93 -0.37 0.09 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.77 6.16 -40.82 -0.25 7.52 16 38 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 39 H 0.03 0.59 6.80 -51.93 -0.35 0.24 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 44 H 0.07 1.17 7.11 -51.92 -0.37 0.80 16 45 H 0.12 1.06 5.22 -51.93 -0.27 0.79 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -31.24 347.22 -6.57 -37.80 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.56 Total: 0.13 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.10 Total: 0.57 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.41 Total: -49.49 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.07 Total: -4.52 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.09 Total: 19.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.24 -6.57 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091994042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.399 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds