Wall clock time and date at job start Tue Mar 31 2020 10:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 10 9 13 13 C 1.52994 * 113.66220 * 139.93548 * 12 11 10 14 14 N 1.46498 * 109.47402 * 87.44478 * 13 12 11 15 15 C 1.34776 * 120.00338 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99996 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00299 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.47305 * 179.97438 * 17 15 14 19 19 H 1.08995 * 110.01225 * 54.30352 * 18 17 15 20 20 C 1.54262 * 110.03245 * 292.90934 * 18 17 15 21 21 C 1.54962 * 104.16062 * 217.13442 * 20 18 17 22 22 C 1.54884 * 102.77506 * 37.88977 * 21 20 18 23 23 C 1.53878 * 110.03067 * 175.69198 * 18 17 15 24 24 F 1.39904 * 110.03111 * 238.56979 * 23 18 17 25 25 F 1.39903 * 110.03326 * 359.95330 * 23 18 17 26 26 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 27 27 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 29 29 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 30 30 H 1.08993 * 113.61491 * 203.74894 * 11 10 9 31 31 H 1.09000 * 113.61138 * 334.65232 * 11 10 9 32 32 H 1.09002 * 113.61454 * 270.79954 * 12 11 10 33 33 H 1.09005 * 109.46709 * 207.43538 * 13 12 11 34 34 H 1.08998 * 109.47556 * 327.43829 * 13 12 11 35 35 H 0.97001 * 120.00130 * 359.97438 * 14 13 12 36 36 H 1.09002 * 109.47398 * 299.99962 * 17 15 14 37 37 H 1.09007 * 109.47078 * 59.99913 * 17 15 14 38 38 H 1.09001 * 110.48621 * 335.78426 * 20 18 17 39 39 H 1.08999 * 110.48535 * 98.42539 * 20 18 17 40 40 H 1.08995 * 110.72026 * 279.57596 * 21 20 18 41 41 H 1.08996 * 110.92283 * 156.29780 * 21 20 18 42 42 H 1.09006 * 110.48679 * 203.40222 * 22 21 20 43 43 H 1.08998 * 110.48759 * 80.76559 * 22 21 20 44 44 H 1.09001 * 113.61695 * 25.34675 * 26 10 9 45 45 H 1.08997 * 113.61223 * 156.25258 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 0.7419 -5.0692 0.8732 13 6 0.6511 -6.5470 1.2588 14 7 0.0514 -6.6684 2.5899 15 6 -0.1295 -7.8859 3.1390 16 8 0.2038 -8.8809 2.5310 17 6 -0.7459 -8.0108 4.5085 18 6 -0.8380 -9.4887 4.8935 19 1 0.1421 -9.9580 4.8087 20 6 -1.8505 -10.2105 3.9805 21 6 -2.5550 -11.2213 4.9204 22 6 -2.6814 -10.4273 6.2442 23 6 -1.3657 -9.6266 6.3324 24 9 -0.4370 -10.3161 7.1194 25 9 -1.6092 -8.3611 6.8769 26 6 1.2469 -4.8365 -0.5606 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 3.0560 -3.5693 -0.4293 30 1 2.8661 -5.0708 1.4984 31 1 1.8827 -3.7165 2.2054 32 1 -0.1643 -4.5128 1.1127 33 1 0.0330 -7.0746 0.5324 34 1 1.6505 -6.9818 1.2695 35 1 -0.2155 -5.8726 3.0761 36 1 -0.1273 -7.4836 5.2348 37 1 -1.7452 -7.5754 4.4983 38 1 -2.5714 -9.5009 3.5744 39 1 -1.3334 -10.7332 3.1758 40 1 -1.9406 -12.1105 5.0605 41 1 -3.5388 -11.4900 4.5357 42 1 -2.7709 -11.1084 7.0905 43 1 -3.5366 -9.7526 6.2043 44 1 0.4632 -4.5360 -1.2561 45 1 1.8650 -5.6488 -0.9430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100608406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:56 Heat of formation + Delta-G solvation = -126.543765 kcal Electronic energy + Delta-G solvation = -26263.021977 eV Core-core repulsion = 22144.104040 eV Total energy + Delta-G solvation = -4118.917937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.24018 -47.29068 -40.05681 -38.66475 -37.51151 -34.67301 -33.23798 -32.20709 -30.19946 -28.26517 -27.81682 -25.74971 -25.08553 -23.67151 -21.83704 -21.65347 -21.00836 -20.18184 -18.51912 -18.08704 -17.34020 -17.31437 -16.67890 -16.07644 -16.00506 -15.60781 -15.03926 -14.81590 -14.58188 -14.33750 -14.21787 -13.96201 -13.75917 -13.62414 -13.39750 -13.20750 -12.93499 -12.63809 -12.29872 -12.22959 -11.98995 -11.91146 -11.60912 -11.40783 -11.26999 -11.10993 -11.06147 -10.95505 -10.86945 -10.51433 -10.20590 -10.14667 -9.80278 -9.71898 -9.48664 -9.03045 -8.90568 -7.02949 -5.83571 -3.12686 2.55579 3.00984 3.40042 3.45399 3.45540 3.46976 3.57388 3.83313 3.97077 4.51656 4.53342 4.60743 4.67894 4.77036 4.91002 4.95735 5.01708 5.02494 5.10399 5.21451 5.24198 5.31742 5.40582 5.42622 5.50851 5.59372 5.63239 5.67852 5.80252 5.84211 5.89007 5.92753 6.08062 6.18337 6.33950 6.39163 6.56311 6.71654 6.86940 7.01450 7.46132 7.66573 8.14970 8.35714 9.46399 10.03742 10.37906 11.38885 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.002156 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.616773 B =12983.415427 C =13556.496182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 C -0.168 4.168 12 C -0.120 4.120 13 C 0.131 3.869 14 N -0.723 5.723 15 C 0.513 3.487 16 O -0.544 6.544 17 C -0.136 4.136 18 C -0.113 4.113 19 H 0.108 0.892 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.161 4.161 23 C 0.282 3.718 24 F -0.198 7.198 25 F -0.197 7.197 26 C -0.147 4.147 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -22.396 11.076 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.055 3.945 11 C -0.210 4.210 12 C -0.139 4.139 13 C 0.008 3.992 14 N -0.374 5.374 15 C 0.299 3.701 16 O -0.422 6.422 17 C -0.177 4.177 18 C -0.133 4.133 19 H 0.127 0.873 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.199 4.199 23 C 0.245 3.755 24 F -0.179 7.179 25 F -0.178 7.178 26 C -0.187 4.187 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.406 -22.898 10.650 25.826 hybrid contribution 0.069 1.479 0.565 1.585 sum -5.338 -21.419 11.215 24.760 Atomic orbital electron populations 1.69658 1.05141 1.25812 1.57489 1.24767 0.95549 0.97808 1.02771 0.86166 0.78666 0.83654 0.77565 1.21646 1.21746 1.20698 1.19288 0.91129 0.83961 1.42948 0.90990 1.42169 1.05665 0.99436 1.87200 1.21055 0.95029 0.85610 0.92822 1.23916 0.95502 0.99586 1.01948 1.22745 0.99633 0.93003 0.98479 1.21477 0.97983 0.97098 0.82641 1.46085 1.63251 1.08252 1.19841 1.20432 0.78658 0.83408 0.87620 1.90684 1.51146 1.36692 1.63716 1.21709 1.03688 0.96780 0.95474 1.22516 1.02805 0.96844 0.91087 0.87337 1.22415 0.96866 0.97887 0.97666 1.22532 1.01899 0.98228 0.93611 1.23361 0.95446 1.00165 1.00956 1.21910 0.88974 0.76814 0.87755 1.93021 1.68360 1.79426 1.77067 1.93000 1.94744 1.42233 1.87845 1.23420 1.00594 0.99663 0.94992 0.93426 0.78125 0.92069 0.91449 0.91478 0.88890 0.91852 0.91614 0.76227 0.88083 0.87999 0.90818 0.89125 0.90491 0.89928 0.89004 0.88319 0.91321 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.14 5.31 -52.64 -0.28 -17.42 16 10 C 0.17 3.20 4.55 -67.12 -0.31 2.89 16 11 C -0.17 -2.74 7.45 -25.82 -0.19 -2.93 16 12 C -0.12 -1.73 3.64 -89.71 -0.33 -2.05 16 13 C 0.13 1.68 5.51 -4.05 -0.02 1.65 16 14 N -0.72 -8.22 5.56 -60.30 -0.33 -8.55 16 15 C 0.51 5.98 7.61 -10.99 -0.08 5.89 16 16 O -0.54 -7.97 14.78 5.56 0.08 -7.89 16 17 C -0.14 -1.21 4.18 -27.88 -0.12 -1.32 16 18 C -0.11 -1.00 2.40 -89.50 -0.21 -1.21 16 19 H 0.11 1.09 7.82 -51.93 -0.41 0.68 16 20 C -0.11 -0.86 5.40 -25.03 -0.14 -1.00 16 21 C -0.13 -0.73 6.91 -24.70 -0.17 -0.90 16 22 C -0.16 -1.01 6.40 -25.08 -0.16 -1.17 16 23 C 0.28 2.46 2.53 -25.61 -0.06 2.39 16 24 F -0.20 -2.07 17.04 2.25 0.04 -2.03 16 25 F -0.20 -1.94 15.46 2.25 0.03 -1.91 16 26 C -0.15 -2.29 7.38 -25.92 -0.19 -2.49 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.38 9.86 7.90 -40.82 -0.32 9.54 16 29 H 0.06 1.19 8.11 -51.93 -0.42 0.76 16 30 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 35 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 36 H 0.10 0.85 7.78 -51.93 -0.40 0.44 16 37 H 0.10 0.75 7.97 -51.93 -0.41 0.34 16 38 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 39 H 0.09 0.83 7.63 -51.93 -0.40 0.43 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 43 H 0.10 0.53 8.12 -51.93 -0.42 0.10 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -31.16 370.04 -8.69 -39.85 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.28 Total: 9.68 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.23 Total: -7.44 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.11 Total: -52.83 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.08 Total: -7.89 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.16 -8.69 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100608406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.698 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds