Wall clock time and date at job start Tue Mar 31 2020 11:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39903 * 109.46897 * 2 1 4 4 F 1.39901 * 109.46841 * 240.00036 * 2 1 3 5 5 C 1.52998 * 109.47397 * 119.99771 * 2 1 3 6 6 C 1.52993 * 109.47251 * 180.02562 * 5 2 1 7 7 C 1.50703 * 109.47335 * 180.02562 * 6 5 2 8 8 O 1.21282 * 119.99712 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99761 * 180.02562 * 7 6 5 10 10 C 1.47189 * 126.70879 * 0.02562 * 9 7 6 11 11 C 1.53742 * 106.43104 * 211.33634 * 10 9 7 12 12 H 1.08995 * 112.29120 * 104.36095 * 11 10 9 13 13 C 1.54454 * 109.01147 * 229.45528 * 11 10 9 14 14 N 1.48338 * 104.32346 * 137.92076 * 13 11 10 15 15 C 1.36938 * 128.19234 * 138.17120 * 14 13 11 16 16 H 1.08001 * 120.00431 * 338.75077 * 15 14 13 17 17 C 1.38810 * 119.99806 * 158.75916 * 15 14 13 18 18 N 1.31624 * 120.00078 * 336.53644 * 17 15 14 19 19 Si 1.86798 * 120.00473 * 156.26205 * 17 15 14 20 20 H 1.48505 * 109.46727 * 59.99912 * 19 17 15 21 21 H 1.48497 * 109.47650 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47221 * 300.00214 * 19 17 15 23 23 C 1.48328 * 103.60426 * 318.43532 * 14 13 11 24 24 C 1.54066 * 104.51900 * 41.53115 * 23 14 13 25 25 C 1.52997 * 112.57948 * 97.43599 * 24 23 14 26 26 C 1.47202 * 126.69790 * 179.97438 * 9 7 6 27 27 H 1.09002 * 109.47305 * 299.99910 * 1 2 3 28 28 H 1.09001 * 109.47530 * 60.00069 * 1 2 3 29 29 H 1.09007 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47109 * 60.00063 * 5 2 1 31 31 H 1.09002 * 109.47153 * 300.00412 * 5 2 1 32 32 H 1.09007 * 109.47094 * 59.99955 * 6 5 2 33 33 H 1.09002 * 109.47298 * 300.00225 * 6 5 2 34 34 H 1.09000 * 110.06641 * 92.09370 * 10 9 7 35 35 H 1.09004 * 110.06550 * 330.57557 * 10 9 7 36 36 H 1.08997 * 110.46249 * 19.21741 * 13 11 10 37 37 H 1.08994 * 110.57456 * 256.68532 * 13 11 10 38 38 H 0.97001 * 119.99695 * 353.98332 * 18 17 15 39 39 H 1.09008 * 110.46104 * 160.27837 * 23 14 13 40 40 H 1.08998 * 110.46007 * 282.85137 * 23 14 13 41 41 H 1.09004 * 109.47411 * 302.11404 * 25 24 23 42 42 H 1.09004 * 109.46951 * 62.10952 * 25 24 23 43 43 H 1.08997 * 109.47497 * 182.11154 * 25 24 23 44 44 H 1.09006 * 110.05976 * 267.90460 * 26 9 7 45 45 H 1.08997 * 110.07024 * 29.36505 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5700 -0.7206 1.2495 7 6 4.0724 -1.4315 2.4797 8 8 3.2843 -1.8928 3.2778 9 7 5.3975 -1.5538 2.6933 10 6 6.4780 -1.0522 1.8288 11 6 7.6533 -2.0302 1.9898 12 1 7.7601 -2.6930 1.1312 13 6 8.9414 -1.2266 2.2736 14 7 9.6288 -1.9988 3.3373 15 6 10.9638 -2.2823 3.4495 16 1 11.5993 -2.2439 2.5771 17 6 11.5004 -2.6193 4.6846 18 7 10.8971 -2.2377 5.7904 19 14 13.0744 -3.6209 4.7773 20 1 14.1707 -2.8840 4.0989 21 1 13.4356 -3.8449 6.2002 22 1 12.8686 -4.9297 4.1065 23 6 8.5269 -2.3967 4.2471 24 6 7.3778 -2.8060 3.3060 25 6 7.3075 -4.3187 3.0880 26 6 6.0468 -2.2142 3.8375 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6768 -1.7489 1.2493 31 1 1.6767 -0.2074 2.1392 32 1 3.9330 0.3073 1.2497 33 1 3.9337 -1.2342 0.3595 34 1 6.7770 -0.0530 2.1455 35 1 6.1475 -1.0325 0.7903 36 1 8.6957 -0.2255 2.6279 37 1 9.5633 -1.1718 1.3802 38 1 10.1279 -1.6485 5.7447 39 1 8.8301 -3.2411 4.8662 40 1 8.2248 -1.5551 4.8704 41 1 8.2553 -4.6717 2.6815 42 1 7.1131 -4.8142 4.0392 43 1 6.5041 -4.5480 2.3880 44 1 6.2446 -1.4876 4.6256 45 1 5.4115 -3.0141 4.2176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101282152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:12 Heat of formation + Delta-G solvation = -121.312282 kcal Electronic energy + Delta-G solvation = -27435.762509 eV Core-core repulsion = 23317.071426 eV Total energy + Delta-G solvation = -4118.691083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.26239 -47.23395 -40.40039 -38.62731 -35.25949 -34.42961 -32.77046 -31.52905 -30.89447 -29.49907 -27.05639 -26.03753 -25.21092 -24.48203 -22.43097 -21.71616 -20.62193 -19.25271 -18.53218 -17.94670 -17.55429 -17.23200 -16.54467 -16.21115 -15.98218 -15.27534 -14.85138 -14.63730 -14.14662 -14.03323 -13.69096 -13.60466 -13.58785 -13.55838 -13.30807 -12.96991 -12.79037 -12.73628 -12.60478 -12.41813 -12.16131 -11.88037 -11.78901 -11.53373 -11.21846 -11.17332 -11.09301 -10.74361 -10.50206 -10.28364 -10.19808 -10.11728 -9.98696 -9.81561 -9.43724 -8.63137 -8.52082 -7.03977 -6.16226 -3.23867 2.58938 2.92738 3.46331 3.47460 3.49979 3.68030 3.79908 3.99989 4.08938 4.47366 4.51693 4.70472 4.72418 4.75706 4.89952 5.05956 5.10512 5.17018 5.22244 5.32752 5.38016 5.40685 5.46434 5.50216 5.59162 5.62906 5.63988 5.80043 5.87095 5.95341 6.08936 6.12368 6.17736 6.34376 6.49902 6.51595 6.59078 6.77360 6.85335 6.98073 7.59020 7.68184 8.12226 8.39368 8.91991 9.73266 10.36770 11.19225 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.033334 B = 0.002687 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.788446 B =10416.522113 C =10683.143795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.201 7.201 4 F -0.201 7.201 5 C -0.143 4.143 6 C -0.142 4.142 7 C 0.532 3.468 8 O -0.549 6.549 9 N -0.612 5.612 10 C 0.105 3.895 11 C -0.109 4.109 12 H 0.086 0.914 13 C 0.131 3.869 14 N -0.596 5.596 15 C -0.328 4.328 16 H 0.064 0.936 17 C -0.026 4.026 18 N -0.918 5.918 19 Si 1.068 2.932 20 H -0.293 1.293 21 H -0.285 1.285 22 H -0.293 1.293 23 C 0.148 3.852 24 C -0.086 4.086 25 C -0.119 4.119 26 C 0.115 3.885 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.268 0.732 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.513 3.206 -11.452 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.249 3.751 3 F -0.182 7.182 4 F -0.183 7.183 5 C -0.182 4.182 6 C -0.182 4.182 7 C 0.321 3.679 8 O -0.428 6.428 9 N -0.345 5.345 10 C -0.018 4.018 11 C -0.130 4.130 12 H 0.104 0.896 13 C 0.004 3.996 14 N -0.321 5.321 15 C -0.456 4.456 16 H 0.082 0.918 17 C -0.227 4.227 18 N -0.559 5.559 19 Si 0.898 3.102 20 H -0.220 1.220 21 H -0.210 1.210 22 H -0.220 1.220 23 C 0.022 3.978 24 C -0.089 4.089 25 C -0.176 4.176 26 C -0.008 4.008 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.760 2.217 -10.007 20.506 hybrid contribution -0.869 1.004 -1.298 1.857 sum -18.630 3.221 -11.305 22.028 Atomic orbital electron populations 1.22757 0.91408 1.05592 1.05377 1.21194 0.93942 0.75739 0.84229 1.93016 1.90577 1.37764 1.96883 1.93014 1.90580 1.80943 1.53719 1.22386 0.95778 1.03544 0.96448 1.21604 0.95819 1.02959 0.97817 1.20043 0.80624 0.79912 0.87294 1.90693 1.54371 1.49942 1.47776 1.48608 1.04691 1.56245 1.24938 1.22321 0.87018 0.98100 0.94366 1.23078 0.95194 0.96775 0.97949 0.89554 1.21856 0.91250 0.92955 0.93512 1.45126 1.02489 1.58722 1.25723 1.19721 0.82573 1.47757 0.95548 0.91774 1.25856 1.04103 1.01517 0.91250 1.70777 1.23185 1.33587 1.28301 0.83469 0.74789 0.76169 0.75787 1.21960 1.21008 1.22015 1.21736 0.86214 0.97983 0.91886 1.22557 0.94481 0.95436 0.96407 1.21553 1.01546 0.93451 1.01042 1.22448 0.93179 0.96902 0.88227 0.89118 0.90023 0.89124 0.87946 0.87934 0.88131 0.88156 0.90854 0.90928 0.95650 0.93046 0.92107 0.91354 0.95517 0.91628 0.92736 0.93629 0.91116 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 9.38 37.16 0.35 -0.75 16 2 C 0.29 2.41 2.11 -26.73 -0.06 2.35 16 3 F -0.20 -2.03 16.54 2.25 0.04 -1.99 16 4 F -0.20 -2.02 16.54 2.25 0.04 -1.98 16 5 C -0.14 -1.29 4.09 -26.74 -0.11 -1.40 16 6 C -0.14 -1.47 4.43 -27.89 -0.12 -1.60 16 7 C 0.53 7.49 7.88 -10.99 -0.09 7.40 16 8 O -0.55 -9.36 16.21 5.56 0.09 -9.27 16 9 N -0.61 -8.86 3.32 -170.83 -0.57 -9.43 16 10 C 0.11 1.38 6.38 -3.28 -0.02 1.36 16 11 C -0.11 -1.74 3.71 -88.28 -0.33 -2.07 16 12 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 13 C 0.13 2.53 6.76 -2.27 -0.02 2.51 16 14 N -0.60 -14.43 3.22 -168.71 -0.54 -14.97 16 15 C -0.33 -8.97 10.22 -15.06 -0.15 -9.12 16 16 H 0.06 1.74 7.93 -52.49 -0.42 1.33 16 17 C -0.03 -0.71 5.14 -17.43 -0.09 -0.80 16 18 N -0.92 -27.24 12.77 55.49 0.71 -26.53 16 19 Si 1.07 24.86 29.98 -169.99 -5.10 19.76 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.15 3.26 4.33 -2.48 -0.01 3.25 16 24 C -0.09 -1.49 1.10 -151.68 -0.17 -1.66 16 25 C -0.12 -1.94 8.64 37.16 0.32 -1.62 16 26 C 0.11 1.86 6.26 -2.57 -0.02 1.84 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.10 0.96 7.80 -51.93 -0.41 0.56 16 33 H 0.10 0.96 7.52 -51.93 -0.39 0.57 16 34 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 35 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16 36 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.27 7.96 6.44 -40.82 -0.26 7.69 16 39 H 0.07 1.69 7.15 -51.92 -0.37 1.31 16 40 H 0.03 0.61 6.82 -51.93 -0.35 0.26 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.18 7.15 -51.93 -0.37 0.81 16 45 H 0.08 1.24 7.65 -51.93 -0.40 0.85 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.06 361.53 -7.49 -39.55 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.10 Total: -0.30 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.51 Total: -0.29 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.40 Total: -50.93 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.07 Total: -3.97 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.06 -7.49 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101282152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.760 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds