Wall clock time and date at job start Tue Mar 31 2020 10:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46870 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47033 * 299.99763 * 3 2 1 6 6 H 1.48500 * 109.47002 * 59.99996 * 3 2 1 7 7 C 1.38807 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00598 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.46738 * 125.25162 * 359.96814 * 9 7 2 11 11 C 1.54085 * 106.53924 * 161.26156 * 10 9 7 12 12 C 1.53862 * 103.73407 * 28.07149 * 11 10 9 13 13 C 1.52996 * 111.26295 * 93.95054 * 12 11 10 14 14 N 1.46498 * 109.47059 * 61.00921 * 13 12 11 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 12 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 C 1.52990 * 109.47398 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47353 * 179.97438 * 18 17 15 20 20 F 1.39908 * 109.47183 * 65.00165 * 19 18 17 21 21 F 1.39900 * 109.47870 * 185.00335 * 19 18 17 22 22 C 1.53364 * 110.28296 * 217.86792 * 12 11 10 23 23 C 1.55544 * 105.83594 * 118.03246 * 22 12 11 24 24 C 1.54684 * 104.34930 * 334.35722 * 23 22 12 25 25 C 1.46898 * 125.24944 * 180.02562 * 9 7 2 26 26 H 1.08994 * 111.84009 * 58.48696 * 25 9 7 27 27 H 0.97003 * 120.00135 * 0.02562 * 1 2 3 28 28 H 1.09003 * 110.03813 * 41.99901 * 10 9 7 29 29 H 1.08997 * 110.04465 * 280.53516 * 10 9 7 30 30 H 1.08998 * 110.57514 * 269.50160 * 11 10 9 31 31 H 1.09008 * 110.69406 * 146.68988 * 11 10 9 32 32 H 1.09004 * 109.47066 * 301.01189 * 13 12 11 33 33 H 1.08994 * 109.46974 * 181.01337 * 13 12 11 34 34 H 0.97001 * 120.00384 * 0.02562 * 14 13 12 35 35 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 36 36 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 37 37 H 1.08998 * 109.47508 * 300.00200 * 18 17 15 38 38 H 1.09011 * 109.47182 * 60.00188 * 18 17 15 39 39 H 1.09001 * 109.47608 * 305.00846 * 19 18 17 40 40 H 1.08997 * 110.05777 * 238.03527 * 22 12 11 41 41 H 1.08998 * 110.05584 * 359.54028 * 22 12 11 42 42 H 1.08994 * 110.54335 * 215.54569 * 23 22 12 43 43 H 1.08997 * 110.34786 * 93.06916 * 23 22 12 44 44 H 1.08998 * 110.61444 * 278.64685 * 24 23 22 45 45 H 1.09001 * 110.61527 * 155.66324 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1357 -2.5223 0.0007 11 6 -0.4446 -3.9553 -0.4739 12 6 0.7943 -4.7584 -0.0411 13 6 0.5830 -5.4102 1.3269 14 7 -0.5485 -6.3379 1.2562 15 6 -0.9177 -7.0349 2.3491 16 8 -0.3164 -6.8901 3.3924 17 6 -2.0778 -7.9939 2.2750 18 6 -2.2860 -8.6493 3.6416 19 6 -3.4641 -9.6225 3.5664 20 9 -3.1474 -10.6720 2.6972 21 9 -3.7271 -10.1359 4.8410 22 6 1.1486 -5.8041 -1.1056 23 6 2.5706 -5.4292 -1.6123 24 6 2.6845 -3.9099 -1.3450 25 6 1.9404 -3.7221 0.0016 26 1 2.5898 -3.8685 0.8647 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5774 -1.7986 -0.6845 29 1 -0.5248 -2.3701 1.0074 30 1 -0.5602 -3.9835 -1.5574 31 1 -1.3399 -4.3387 0.0158 32 1 0.3748 -4.6389 2.0685 33 1 1.4826 -5.9553 1.6124 34 1 -1.0293 -6.4539 0.4218 35 1 -2.9798 -7.4518 1.9911 36 1 -1.8668 -8.7625 1.5314 37 1 -1.3841 -9.1913 3.9259 38 1 -2.4972 -7.8804 4.3849 39 1 -4.3455 -9.0983 3.1970 40 1 1.1408 -6.8018 -0.6667 41 1 0.4385 -5.7527 -1.9309 42 1 2.6641 -5.6374 -2.6780 43 1 3.3291 -5.9736 -1.0499 44 1 2.1945 -3.3432 -2.1367 45 1 3.7294 -3.6141 -1.2504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107475058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:21 Heat of formation + Delta-G solvation = -134.904059 kcal Electronic energy + Delta-G solvation = -27137.005325 eV Core-core repulsion = 23017.724858 eV Total energy + Delta-G solvation = -4119.280467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.23265 -47.24511 -40.15670 -39.02336 -34.87222 -34.03519 -33.97716 -31.75000 -30.41588 -28.40961 -26.94291 -26.69237 -24.32403 -23.86613 -22.52996 -20.72725 -20.09570 -19.82114 -18.42092 -17.91776 -17.68740 -17.11588 -16.92013 -16.05234 -15.82271 -15.52746 -14.96479 -14.75704 -14.45703 -14.14381 -13.90454 -13.65055 -13.59083 -13.40770 -13.13054 -12.94710 -12.69139 -12.50392 -12.40951 -11.87783 -11.61697 -11.49811 -11.30910 -11.20634 -11.15920 -10.83575 -10.76700 -10.68967 -10.29494 -10.18924 -10.07370 -9.88136 -9.78947 -9.61496 -9.49466 -8.93687 -8.61659 -6.83360 -5.67671 -3.06450 2.60258 3.03631 3.38859 3.44946 3.46956 3.61210 3.95409 4.13857 4.27334 4.48083 4.68395 4.80147 4.86383 4.95380 4.98513 5.00512 5.17601 5.48355 5.49499 5.52099 5.53605 5.68441 5.72874 5.79801 5.84783 5.99650 6.04438 6.06089 6.15129 6.27661 6.35434 6.40036 6.43941 6.57899 6.66201 6.73783 6.83437 7.09708 7.50519 7.53404 7.66898 7.84777 8.20561 8.33741 9.23147 9.84165 10.47195 11.38072 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020664 B = 0.002773 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.696345 B =10095.283086 C =10881.998731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.163 3.837 11 C -0.133 4.133 12 C -0.082 4.082 13 C 0.140 3.860 14 N -0.721 5.721 15 C 0.511 3.489 16 O -0.542 6.542 17 C -0.142 4.142 18 C -0.156 4.156 19 C 0.262 3.738 20 F -0.207 7.207 21 F -0.206 7.206 22 C -0.111 4.111 23 C -0.122 4.122 24 C -0.130 4.130 25 C 0.173 3.827 26 H 0.047 0.953 27 H 0.250 0.750 28 H 0.093 0.907 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -18.111 -0.063 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.038 3.962 11 C -0.171 4.171 12 C -0.083 4.083 13 C 0.017 3.983 14 N -0.372 5.372 15 C 0.297 3.703 16 O -0.420 6.420 17 C -0.183 4.183 18 C -0.194 4.194 19 C 0.208 3.792 20 F -0.189 7.189 21 F -0.188 7.188 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.170 4.170 25 C 0.064 3.936 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.765 -17.780 0.716 18.705 hybrid contribution 0.208 0.756 -0.358 0.862 sum -5.557 -17.024 0.358 17.912 Atomic orbital electron populations 1.69893 1.04843 1.24611 1.57734 1.24775 0.95704 0.97657 1.02512 0.86044 0.78717 0.83837 0.77192 1.20549 1.21837 1.21835 1.19083 0.90507 0.82367 1.42779 0.90480 1.44346 1.01587 0.99540 1.86520 1.21433 0.84569 0.90956 0.99243 1.22796 0.95140 0.99032 1.00161 1.21880 0.98136 0.95246 0.93059 1.21359 0.87902 0.91527 0.97508 1.46063 1.34606 1.43579 1.12987 1.20369 0.85005 0.81150 0.83790 1.90733 1.55482 1.66195 1.29563 1.21572 0.98780 0.99275 0.98631 1.22402 0.98689 0.99336 0.99011 1.21972 0.99862 0.83607 0.73775 1.92988 1.94567 1.61501 1.69834 1.92993 1.95218 1.88855 1.41685 1.22378 0.97543 0.97395 0.97536 1.22521 0.96151 0.97577 0.99806 1.23000 1.00298 0.93757 0.99960 1.21536 0.91814 0.85381 0.94831 0.93537 0.93902 0.88945 0.97015 0.92088 0.92577 0.90901 0.91703 0.76512 0.88155 0.88033 0.88613 0.87798 0.87099 0.92252 0.91785 0.92523 0.92416 0.90959 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.14 55.49 0.56 -25.85 16 2 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -5.89 9.96 -15.06 -0.15 -6.04 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.41 2.99 -162.39 -0.48 -14.89 16 10 C 0.16 3.77 5.65 -3.35 -0.02 3.75 16 11 C -0.13 -2.25 5.77 -25.72 -0.15 -2.40 16 12 C -0.08 -1.28 0.53 -153.04 -0.08 -1.36 16 13 C 0.14 2.11 4.43 -4.04 -0.02 2.09 16 14 N -0.72 -8.47 4.65 -60.30 -0.28 -8.75 16 15 C 0.51 6.21 7.83 -10.98 -0.09 6.12 16 16 O -0.54 -8.96 15.98 5.55 0.09 -8.87 16 17 C -0.14 -1.07 5.62 -27.89 -0.16 -1.23 16 18 C -0.16 -1.27 4.73 -26.74 -0.13 -1.39 16 19 C 0.26 1.86 5.29 37.16 0.20 2.06 16 20 F -0.21 -1.84 17.02 2.25 0.04 -1.80 16 21 F -0.21 -1.97 17.34 2.25 0.04 -1.93 16 22 C -0.11 -1.42 5.75 -25.19 -0.14 -1.56 16 23 C -0.12 -1.67 6.88 -24.49 -0.17 -1.84 16 24 C -0.13 -2.28 6.23 -24.79 -0.15 -2.43 16 25 C 0.17 3.35 3.60 -65.83 -0.24 3.11 16 26 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.01 7.42 -51.93 -0.39 0.62 16 31 H 0.06 0.84 7.03 -51.92 -0.36 0.47 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 3.70 7.55 -40.82 -0.31 3.39 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.61 7.94 -51.93 -0.41 0.20 16 37 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.10 0.89 8.10 -51.92 -0.42 0.47 16 39 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 41 H 0.06 0.77 7.28 -51.93 -0.38 0.39 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -31.81 361.07 -8.16 -39.98 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.16 Total: 1.34 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.39 Total: -1.52 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.20 Total: -49.49 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.81 -8.16 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107475058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.925 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds