Wall clock time and date at job start Tue Mar 31 2020 11:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46837 * 2 1 4 4 H 1.09006 * 109.47400 * 303.40012 * 3 2 1 5 5 C 1.53001 * 109.47518 * 63.39919 * 3 2 1 6 6 C 1.53005 * 109.47210 * 185.89953 * 5 3 2 7 7 F 1.39892 * 109.46836 * 173.97370 * 6 5 3 8 8 F 1.39900 * 109.47037 * 293.97581 * 6 5 3 9 9 C 1.50705 * 109.47166 * 183.40580 * 3 2 1 10 10 O 1.21284 * 119.99417 * 277.95780 * 9 3 2 11 11 N 1.34771 * 120.00612 * 97.95125 * 9 3 2 12 12 C 1.46492 * 120.00384 * 180.02562 * 11 9 3 13 13 H 1.09006 * 110.55905 * 35.18213 * 12 11 9 14 14 C 1.55868 * 110.10050 * 159.13617 * 12 11 9 15 15 C 1.55848 * 103.53231 * 118.86563 * 14 12 11 16 16 H 1.09001 * 116.12560 * 158.54136 * 15 14 12 17 17 C 1.55843 * 105.06214 * 287.57090 * 15 14 12 18 18 C 1.54854 * 103.44218 * 71.82537 * 17 15 14 19 19 C 1.55839 * 103.44826 * 359.97438 * 18 17 15 20 20 H 1.09007 * 115.55649 * 158.81431 * 19 18 17 21 21 N 1.50232 * 101.05025 * 32.94267 * 19 18 17 22 22 C 1.36930 * 130.84037 * 126.05324 * 21 19 18 23 23 H 1.07999 * 120.00445 * 359.97438 * 22 21 19 24 24 C 1.38823 * 120.00196 * 179.97438 * 22 21 19 25 25 N 1.31616 * 119.99507 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00016 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47338 * 60.00395 * 26 24 22 28 28 H 1.48506 * 109.46796 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47134 * 299.99762 * 26 24 22 30 30 H 1.08998 * 109.46956 * 174.40618 * 1 2 3 31 31 H 1.08999 * 109.46872 * 294.40358 * 1 2 3 32 32 H 1.08991 * 109.47103 * 54.40496 * 1 2 3 33 33 H 1.08995 * 109.47458 * 239.99542 * 2 1 3 34 34 H 1.09004 * 109.47062 * 119.99702 * 2 1 3 35 35 H 1.08997 * 109.47003 * 305.90267 * 5 3 2 36 36 H 1.08997 * 109.46694 * 65.90577 * 5 3 2 37 37 H 1.09002 * 109.46886 * 53.97746 * 6 5 3 38 38 H 0.97002 * 119.99907 * 0.02562 * 11 9 3 39 39 H 1.08994 * 111.10250 * 0.09530 * 14 12 11 40 40 H 1.09001 * 110.06863 * 237.13948 * 14 12 11 41 41 H 1.08996 * 110.62503 * 190.30667 * 17 15 14 42 42 H 1.08997 * 110.62583 * 313.33671 * 17 15 14 43 43 H 1.09003 * 110.62572 * 118.49356 * 18 17 15 44 44 H 1.09007 * 110.62419 * 241.50405 * 18 17 15 45 45 H 0.97007 * 119.99911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9737 -0.8580 5 6 1.6010 2.1387 1.2898 6 6 1.9825 3.6190 1.2256 7 9 1.4614 4.2836 2.3408 8 9 3.3761 3.7416 1.2187 9 6 3.5446 1.4434 -0.0844 10 8 4.2082 1.2778 0.9172 11 7 4.1529 1.6281 -1.2728 12 6 5.6155 1.6285 -1.3549 13 1 6.0388 0.9160 -0.6468 14 6 6.0701 1.3301 -2.8156 15 6 6.8606 2.6108 -3.2203 16 1 7.5680 2.4986 -4.0419 17 6 5.7755 3.7126 -3.4128 18 6 5.3116 4.0176 -1.9672 19 6 6.1791 3.0580 -1.0982 20 1 6.2866 3.3401 -0.0508 21 7 7.4497 3.0141 -1.8987 22 6 8.7460 3.2645 -1.5354 23 1 8.9770 3.5476 -0.5191 24 6 9.7634 3.1545 -2.4735 25 7 9.4818 2.8101 -3.7122 26 14 11.5316 3.4968 -1.9781 27 1 11.9344 2.5580 -0.9005 28 1 12.4197 3.3119 -3.1539 29 1 11.6464 4.8934 -1.4865 30 1 -0.3633 -1.0228 -0.1002 31 1 -0.3633 0.4246 0.9359 32 1 -0.3633 0.5981 -0.8356 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 0.5209 2.0464 1.4030 36 1 2.0968 1.6724 2.1411 37 1 1.5744 4.0603 0.3162 38 1 3.6222 1.7609 -2.0738 39 1 5.2120 1.1852 -3.4718 40 1 6.7206 0.4556 -2.8337 41 1 6.2079 4.6012 -3.8727 42 1 4.9462 3.3345 -4.0105 43 1 5.5138 5.0574 -1.7104 44 1 4.2521 3.7907 -1.8481 45 1 10.1926 2.7335 -4.3678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109395377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:20 Heat of formation + Delta-G solvation = -127.503411 kcal Electronic energy + Delta-G solvation = -28505.511130 eV Core-core repulsion = 24386.551579 eV Total energy + Delta-G solvation = -4118.959551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.82143 -47.85875 -41.48709 -40.02877 -36.63488 -35.40356 -34.16904 -31.85678 -31.00855 -30.70464 -29.43802 -27.53524 -26.04624 -23.94155 -23.24376 -22.52634 -21.43245 -20.84584 -20.11233 -19.03341 -18.61363 -18.09764 -17.81185 -17.45781 -16.83640 -16.58771 -16.36148 -15.88306 -15.39928 -15.10835 -15.01075 -14.72019 -14.36952 -14.21347 -14.15987 -13.91330 -13.56572 -13.46206 -13.28873 -13.12905 -12.86362 -12.80869 -12.79007 -12.59727 -12.47548 -12.34894 -12.11163 -12.01400 -11.88761 -11.63368 -11.53157 -11.49968 -11.15442 -11.03799 -10.77822 -10.59041 -9.91384 -8.84730 -7.80108 -5.18922 1.44600 1.46986 1.53132 1.77178 2.25985 2.50778 2.93365 3.32985 3.39624 3.47108 3.53184 3.69213 3.88453 3.99810 4.09357 4.12294 4.17011 4.17845 4.39474 4.43583 4.49084 4.51014 4.60645 4.63635 4.74095 4.81554 4.83346 4.90990 4.99531 5.01446 5.08724 5.16776 5.22195 5.28681 5.30453 5.34705 5.48148 5.51098 5.57976 5.79587 5.90604 6.28707 6.74182 7.06126 7.45792 7.69070 8.55659 9.26416 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.003795 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.433871 B = 7376.254825 C = 7924.874912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.095 4.095 4 H 0.135 0.865 5 C -0.154 4.154 6 C 0.242 3.758 7 F -0.221 7.221 8 F -0.222 7.222 9 C 0.505 3.495 10 O -0.583 6.583 11 N -0.699 5.699 12 C 0.150 3.850 13 H 0.047 0.953 14 C -0.123 4.123 15 C 0.137 3.863 16 H 0.121 0.879 17 C -0.125 4.125 18 C -0.111 4.111 19 C 0.121 3.879 20 H 0.053 0.947 21 N -0.621 5.621 22 C -0.228 4.228 23 H 0.066 0.934 24 C -0.060 4.060 25 N -0.942 5.942 26 Si 0.974 3.026 27 H -0.284 1.284 28 H -0.287 1.287 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.149 0.851 38 H 0.414 0.586 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.033 0.967 42 H 0.092 0.908 43 H 0.036 0.964 44 H 0.090 0.910 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.496 -3.275 1.485 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.116 4.116 4 H 0.153 0.847 5 C -0.192 4.192 6 C 0.189 3.811 7 F -0.202 7.202 8 F -0.204 7.204 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.351 5.351 12 C 0.042 3.958 13 H 0.065 0.935 14 C -0.163 4.163 15 C 0.031 3.969 16 H 0.138 0.862 17 C -0.164 4.164 18 C -0.150 4.150 19 C 0.013 3.987 20 H 0.071 0.929 21 N -0.343 5.343 22 C -0.357 4.357 23 H 0.084 0.916 24 C -0.253 4.253 25 N -0.592 5.592 26 Si 0.803 3.197 27 H -0.211 1.211 28 H -0.213 1.213 29 H -0.209 1.209 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.157 0.843 36 H 0.090 0.910 37 H 0.166 0.834 38 H 0.252 0.748 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.110 0.890 43 H 0.055 0.945 44 H 0.108 0.892 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.675 -3.346 2.166 24.008 hybrid contribution 1.731 0.376 0.447 1.827 sum -21.944 -2.971 2.613 22.298 Atomic orbital electron populations 1.21828 0.92618 1.02978 1.03175 1.21403 0.98119 0.92294 1.02756 1.21395 0.89399 1.00508 1.00304 0.84715 1.22690 1.05725 0.91641 0.99135 1.22637 0.74849 0.94840 0.88784 1.92942 1.86460 1.83029 1.57771 1.93053 1.33324 1.96948 1.97044 1.21308 0.91647 0.75048 0.82719 1.90702 1.68053 1.50564 1.36906 1.46007 1.06275 1.72442 1.10363 1.22171 0.79748 0.96762 0.97110 0.93510 1.23291 0.99957 0.98934 0.94111 1.23699 0.92004 0.91097 0.90069 0.86195 1.22958 0.98662 0.98938 0.95836 1.22745 0.99164 0.97582 0.95516 1.23243 0.86600 0.95083 0.93776 0.92897 1.46746 1.00836 1.79045 1.07668 1.19239 0.83060 1.38359 0.95064 0.91647 1.25371 1.01151 1.02980 0.95810 1.69649 1.31418 1.55407 1.02698 0.85213 0.80032 0.77806 0.76641 1.21105 1.21309 1.20935 0.91902 0.91795 0.90447 0.90599 0.92987 0.84285 0.90998 0.83397 0.74776 0.88038 0.93939 0.94792 0.88975 0.94547 0.89205 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.49 71.98 0.68 -0.34 16 2 C -0.11 -1.37 5.40 30.59 0.17 -1.20 16 3 C -0.09 -1.40 2.20 -11.54 -0.03 -1.43 16 4 H 0.14 0.89 8.07 -2.38 -0.02 0.87 16 5 C -0.15 -2.42 4.69 30.60 0.14 -2.28 16 6 C 0.24 4.65 5.25 71.98 0.38 5.03 16 7 F -0.22 -5.02 17.34 44.97 0.78 -4.24 16 8 F -0.22 -6.87 14.76 44.97 0.66 -6.21 16 9 C 0.51 13.51 5.24 87.66 0.46 13.97 16 10 O -0.58 -22.38 14.97 -3.04 -0.05 -22.42 16 11 N -0.70 -17.93 3.69 -433.33 -1.60 -19.53 16 12 C 0.15 5.55 3.20 46.95 0.15 5.70 16 13 H 0.05 2.08 7.64 -2.38 -0.02 2.07 16 14 C -0.12 -4.48 6.20 32.57 0.20 -4.28 16 15 C 0.14 6.16 4.72 46.23 0.22 6.38 16 16 H 0.12 6.30 5.52 -2.39 -0.01 6.29 16 17 C -0.12 -4.50 6.44 32.21 0.21 -4.30 16 18 C -0.11 -3.92 6.34 32.21 0.20 -3.71 16 19 C 0.12 5.27 5.30 46.21 0.24 5.52 16 20 H 0.05 2.59 8.14 -2.38 -0.02 2.57 16 21 N -0.62 -32.36 2.98 -615.42 -1.83 -34.19 16 22 C -0.23 -13.35 10.59 84.04 0.89 -12.46 16 23 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 24 C -0.06 -3.47 5.50 84.87 0.47 -3.00 16 25 N -0.94 -55.23 10.46 21.65 0.23 -55.00 16 26 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.39 6.68 -2.39 -0.02 0.37 16 32 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.14 1.14 6.37 -2.39 -0.02 1.13 16 36 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 37 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.41 7.14 7.93 -92.71 -0.74 6.41 16 39 H 0.10 2.70 7.36 -2.39 -0.02 2.68 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 2.46 7.82 -2.39 -0.02 2.44 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 2.41 6.52 -2.38 -0.02 2.40 16 45 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -77.83 356.61 4.87 -72.96 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.26 Total: 15.89 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 4.39 Total: 3.60 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.20 Total: -108.73 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 1.44 Total: -10.44 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.83 4.87 -72.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109395377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.547 kcal (2) G-P(sol) polarization free energy of solvation -77.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds