Wall clock time and date at job start Tue Mar 31 2020 11:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47161 * 2 1 4 4 H 1.08994 * 109.46996 * 305.52501 * 3 2 1 5 5 C 1.53007 * 109.46655 * 185.52596 * 3 2 1 6 6 C 1.52997 * 109.47378 * 65.00487 * 5 3 2 7 7 F 1.39896 * 109.47347 * 64.99380 * 6 5 3 8 8 F 1.39895 * 109.47458 * 184.99724 * 6 5 3 9 9 C 1.50693 * 109.46907 * 65.52961 * 3 2 1 10 10 O 1.21289 * 120.00586 * 35.10014 * 9 3 2 11 11 N 1.34778 * 120.00072 * 214.82389 * 9 3 2 12 12 C 1.46498 * 120.00442 * 175.54073 * 11 9 3 13 13 H 1.09004 * 110.55791 * 41.48181 * 12 11 9 14 14 C 1.54857 * 110.62466 * 164.54794 * 12 11 9 15 15 C 1.55844 * 103.44106 * 118.49693 * 14 12 11 16 16 H 1.09000 * 116.12518 * 159.15083 * 15 14 12 17 17 C 1.55848 * 105.06410 * 288.17197 * 15 14 12 18 18 C 1.56684 * 103.59790 * 71.59464 * 17 15 14 19 19 C 1.55841 * 102.60251 * 0.33837 * 18 17 15 20 20 H 1.09001 * 115.56788 * 159.08496 * 19 18 17 21 21 N 1.50232 * 101.05400 * 32.93434 * 15 14 12 22 22 C 1.36943 * 130.83749 * 126.05421 * 21 15 14 23 23 H 1.07997 * 119.99954 * 179.97438 * 22 21 15 24 24 C 1.38813 * 120.00086 * 359.97366 * 22 21 15 25 25 N 1.31619 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00029 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47161 * 59.99870 * 26 24 22 28 28 H 1.48503 * 109.46841 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.46760 * 299.99763 * 26 24 22 30 30 H 1.08991 * 109.47151 * 184.73410 * 1 2 3 31 31 H 1.09002 * 109.46733 * 304.73375 * 1 2 3 32 32 H 1.09000 * 109.47331 * 64.73078 * 1 2 3 33 33 H 1.09006 * 109.47151 * 240.00039 * 2 1 3 34 34 H 1.08997 * 109.47442 * 120.00610 * 2 1 3 35 35 H 1.09004 * 109.46461 * 185.00087 * 5 3 2 36 36 H 1.08997 * 109.47244 * 304.99404 * 5 3 2 37 37 H 1.09005 * 109.46755 * 305.00051 * 6 5 3 38 38 H 0.97003 * 119.99629 * 355.54584 * 11 9 3 39 39 H 1.09006 * 110.62766 * 236.97933 * 14 12 11 40 40 H 1.09000 * 110.62840 * 0.02562 * 14 12 11 41 41 H 1.09001 * 110.62997 * 190.31464 * 17 15 14 42 42 H 1.09002 * 110.62841 * 313.18310 * 17 15 14 43 43 H 1.09002 * 111.44297 * 241.93802 * 18 17 15 44 44 H 1.09007 * 110.61508 * 118.35738 * 18 17 15 45 45 H 0.97008 * 119.99916 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 -0.8363 5 6 3.5638 1.4446 -0.1389 6 6 3.9521 0.8781 -1.5061 7 9 3.4874 1.7306 -2.5132 8 9 5.3447 0.7737 -1.5892 9 6 1.6526 2.1122 1.2931 10 8 1.6330 1.4742 2.3245 11 7 1.3332 3.4216 1.3047 12 6 0.8627 4.0500 2.5415 13 1 1.4446 3.6999 3.3942 14 6 0.9284 5.5930 2.4286 15 6 -0.5579 6.0319 2.5930 16 1 -0.7223 7.0658 2.8966 17 6 -1.2563 5.6011 1.2681 18 6 -1.3191 4.0392 1.3757 19 6 -0.6543 3.7667 2.7586 20 1 -0.8928 2.8055 3.2140 21 7 -1.0652 4.9821 3.5404 22 6 -1.7054 5.0975 4.7455 23 1 -1.9977 4.2111 5.2887 24 6 -1.9786 6.3539 5.2688 25 7 -1.6228 7.4342 4.6064 26 14 -2.8513 6.5112 6.9128 27 1 -2.0414 5.8514 7.9683 28 1 -3.0237 7.9481 7.2462 29 1 -4.1831 5.8594 6.8307 30 1 -0.3633 -1.0241 0.0848 31 1 -0.3633 0.5855 0.8446 32 1 -0.3634 0.4387 -0.9293 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9352 2.4655 -0.0499 36 1 4.0012 0.8291 0.6471 37 1 3.5056 -0.1085 -1.6306 38 1 1.4149 3.9478 0.4939 39 1 1.5425 6.0106 3.2266 40 1 1.3107 5.8907 1.4522 41 1 -2.2588 6.0246 1.2071 42 1 -0.6612 5.9004 0.4053 43 1 -0.7525 3.5616 0.5764 44 1 -2.3536 3.6956 1.3726 45 1 -1.8134 8.3122 4.9723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109395378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:24 Heat of formation + Delta-G solvation = -110.148244 kcal Electronic energy + Delta-G solvation = -27971.985831 eV Core-core repulsion = 23853.778857 eV Total energy + Delta-G solvation = -4118.206974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.23573 -47.23667 -40.27694 -38.67791 -35.63763 -33.96382 -32.32551 -31.42957 -29.30109 -29.05744 -27.95878 -26.44597 -24.21167 -23.33222 -22.39039 -21.21427 -20.00978 -19.43420 -18.57994 -17.95527 -17.77575 -17.12324 -16.87948 -16.38499 -15.41364 -15.03499 -14.86647 -14.55527 -14.24111 -14.14486 -14.03222 -13.88205 -13.61107 -13.36837 -13.20127 -12.76994 -12.33847 -12.26188 -12.14258 -11.77917 -11.62505 -11.47973 -11.30707 -11.09722 -11.00174 -10.96348 -10.91708 -10.88557 -10.81148 -10.23160 -10.11665 -9.84374 -9.59976 -9.42489 -9.25494 -8.94565 -8.52948 -6.93301 -5.74221 -3.12283 2.71228 3.25198 3.39888 3.43789 3.44909 3.61270 3.92673 4.16362 4.23073 4.44340 4.54515 4.72327 4.85375 5.07508 5.19136 5.21072 5.26356 5.32277 5.37254 5.53674 5.57587 5.62935 5.77718 5.81508 5.83212 5.90484 6.03603 6.06016 6.10929 6.16256 6.28314 6.30819 6.52329 6.58198 6.65724 6.78127 6.94627 6.97345 7.24827 7.50450 7.71525 7.81501 8.15346 8.44840 9.08998 9.71637 10.51885 11.35392 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.003173 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.571721 B = 8822.343478 C = 9058.623110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.097 0.903 5 C -0.161 4.161 6 C 0.261 3.739 7 F -0.205 7.205 8 F -0.206 7.206 9 C 0.518 3.482 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.127 3.873 13 H 0.079 0.921 14 C -0.140 4.140 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.136 4.136 18 C -0.132 4.132 19 C 0.130 3.870 20 H 0.083 0.917 21 N -0.589 5.589 22 C -0.211 4.211 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.395 0.605 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.825 -11.169 -14.293 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.131 4.131 4 H 0.115 0.885 5 C -0.199 4.199 6 C 0.208 3.792 7 F -0.186 7.186 8 F -0.188 7.188 9 C 0.302 3.698 10 O -0.414 6.414 11 N -0.361 5.361 12 C 0.021 3.979 13 H 0.098 0.902 14 C -0.180 4.180 15 C 0.047 3.953 16 H 0.172 0.828 17 C -0.175 4.175 18 C -0.171 4.171 19 C 0.021 3.979 20 H 0.101 0.899 21 N -0.310 5.310 22 C -0.339 4.339 23 H 0.096 0.904 24 C -0.207 4.207 25 N -0.572 5.572 26 Si 0.748 3.252 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.663 -11.413 -13.273 19.531 hybrid contribution -0.317 0.401 0.261 0.574 sum 8.346 -11.012 -13.012 18.980 Atomic orbital electron populations 1.21784 0.94829 1.02280 1.02313 1.21537 0.97162 0.93644 1.02712 1.21364 0.94918 0.98957 0.97831 0.88475 1.22576 0.96305 1.04988 0.96048 1.22007 0.75860 0.94632 0.86736 1.92992 1.88325 1.73854 1.63425 1.92991 1.32005 1.96968 1.96817 1.20180 0.77193 0.82356 0.90031 1.90706 1.52680 1.64059 1.33920 1.46326 1.66190 1.09624 1.13947 1.22651 0.96886 0.93370 0.84959 0.90242 1.23280 1.01774 0.93106 0.99830 1.23768 0.87291 0.98135 0.86107 0.82824 1.23363 1.00601 0.94878 0.98702 1.23224 0.99504 0.96680 0.97731 1.23137 0.91451 0.91978 0.91375 0.89895 1.46457 1.65733 0.99581 1.19214 1.19016 1.28734 0.92665 0.93486 0.90379 1.24693 1.01797 0.95072 0.99117 1.69423 1.52271 0.97070 1.38451 0.86104 0.79351 0.76648 0.83132 1.21192 1.21564 1.21250 0.92339 0.91851 0.92716 0.91618 0.90041 0.88854 0.87737 0.86858 0.77070 0.91604 0.92720 0.92682 0.93708 0.92855 0.93156 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.81 37.16 0.36 -1.16 16 2 C -0.11 -1.00 5.05 -26.73 -0.13 -1.13 16 3 C -0.11 -1.03 2.14 -91.77 -0.20 -1.23 16 4 H 0.10 0.81 7.81 -51.93 -0.41 0.40 16 5 C -0.16 -1.33 4.89 -26.73 -0.13 -1.46 16 6 C 0.26 1.99 5.16 37.16 0.19 2.18 16 7 F -0.20 -1.91 16.93 2.25 0.04 -1.87 16 8 F -0.21 -1.98 17.34 2.25 0.04 -1.94 16 9 C 0.52 7.09 5.75 -10.99 -0.06 7.03 16 10 O -0.54 -9.51 15.81 5.55 0.09 -9.43 16 11 N -0.71 -9.86 3.54 -51.40 -0.18 -10.04 16 12 C 0.13 2.31 3.06 -65.44 -0.20 2.11 16 13 H 0.08 1.63 7.77 -51.93 -0.40 1.23 16 14 C -0.14 -2.60 6.21 -24.23 -0.15 -2.75 16 15 C 0.15 3.40 4.72 -62.80 -0.30 3.11 16 16 H 0.16 3.91 5.52 -51.93 -0.29 3.63 16 17 C -0.14 -2.58 6.49 -23.22 -0.15 -2.73 16 18 C -0.13 -2.37 6.45 -23.23 -0.15 -2.52 16 19 C 0.13 2.67 5.26 -62.80 -0.33 2.34 16 20 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 21 N -0.59 -14.54 2.99 -145.82 -0.44 -14.97 16 22 C -0.21 -5.79 10.59 -15.06 -0.16 -5.95 16 23 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 25 N -0.92 -26.00 10.46 55.49 0.58 -25.42 16 26 Si 0.92 21.92 29.55 -169.99 -5.02 16.89 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.80 7.16 -51.93 -0.37 0.43 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.40 6.23 -51.93 -0.32 0.08 16 34 H 0.08 0.82 7.66 -51.93 -0.40 0.43 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.57 6.24 -51.93 -0.32 0.25 16 38 H 0.39 4.51 8.11 -40.82 -0.33 4.18 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.84 7.30 -51.93 -0.38 0.46 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 43 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 44 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -30.71 358.48 -7.89 -38.60 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.90 Total: 5.34 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.58 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.04 Total: -50.43 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.80 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.71 -7.89 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109395378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.544 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds