Wall clock time and date at job start Tue Mar 31 2020 11:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47356 * 2 1 4 4 C 1.50704 * 109.46978 * 119.99742 * 2 1 3 5 5 O 1.21282 * 119.99803 * 119.99589 * 4 2 1 6 6 N 1.34775 * 119.99952 * 299.99826 * 4 2 1 7 7 C 1.46504 * 119.99831 * 180.02562 * 6 4 2 8 8 H 1.09004 * 110.56115 * 36.93434 * 7 6 4 9 9 C 1.56991 * 110.29759 * 160.04857 * 7 6 4 10 10 C 1.55841 * 102.65659 * 118.68024 * 9 7 6 11 11 H 1.08995 * 115.56226 * 159.16931 * 10 9 7 12 12 C 1.55847 * 105.06106 * 287.78018 * 10 9 7 13 13 C 1.54845 * 103.44736 * 72.57667 * 12 10 9 14 14 C 1.55835 * 103.59075 * 359.91903 * 13 12 10 15 15 H 1.09007 * 115.56502 * 158.88965 * 14 13 12 16 16 N 1.50239 * 101.75282 * 32.77234 * 10 9 7 17 17 C 1.36939 * 130.83834 * 125.88437 * 16 10 9 18 18 H 1.08001 * 119.99974 * 179.97438 * 17 16 10 19 19 C 1.38809 * 119.99754 * 359.97438 * 17 16 10 20 20 N 1.31617 * 120.00357 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99591 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47525 * 60.00133 * 21 19 17 23 23 H 1.48501 * 109.47076 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47256 * 299.99501 * 21 19 17 25 25 C 1.53007 * 109.47023 * 239.99372 * 2 1 3 26 26 C 1.52999 * 109.46963 * 60.00177 * 25 2 1 27 27 F 1.39902 * 109.46707 * 180.02562 * 25 2 1 28 28 F 1.39902 * 109.47239 * 300.00202 * 25 2 1 29 29 H 1.09003 * 109.47195 * 300.00168 * 1 2 3 30 30 H 1.09001 * 109.46835 * 60.00527 * 1 2 3 31 31 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47335 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46718 * 299.99544 * 3 2 1 34 34 H 1.08990 * 109.47170 * 59.99539 * 3 2 1 35 35 H 0.96997 * 119.99880 * 0.02562 * 6 4 2 36 36 H 1.09003 * 111.34330 * 0.29318 * 9 7 6 37 37 H 1.09002 * 110.65880 * 236.74467 * 9 7 6 38 38 H 1.08994 * 110.62629 * 314.08276 * 12 10 9 39 39 H 1.09002 * 110.76227 * 191.12998 * 12 10 9 40 40 H 1.09005 * 110.62765 * 118.49246 * 13 12 10 41 41 H 1.09000 * 110.62678 * 241.34926 * 13 12 10 42 42 H 0.96993 * 120.00048 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46856 * 59.99736 * 26 25 2 44 44 H 1.08994 * 109.47487 * 179.97438 * 26 25 2 45 45 H 1.08998 * 109.47410 * 300.00226 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1955 -0.9401 3.6508 8 1 3.2085 -1.3100 3.4923 9 6 2.1347 0.0161 4.8944 10 6 1.1533 -0.7278 5.8495 11 1 1.2198 -0.4504 6.9014 12 6 -0.2521 -0.5595 5.1972 13 6 -0.1934 -1.4990 3.9678 14 6 1.2394 -2.1076 4.0401 15 1 1.3805 -3.0440 3.5002 16 7 1.4480 -2.1662 5.5312 17 6 1.7979 -3.2100 6.3456 18 1 1.9714 -4.1892 5.9241 19 6 1.9297 -3.0096 7.7128 20 7 1.7179 -1.8165 8.2265 21 14 2.4079 -4.4333 8.8236 22 1 3.7325 -4.9615 8.4091 23 1 2.4818 -3.9611 10.2295 24 1 1.3901 -5.5092 8.7152 25 6 2.0400 -0.7214 -1.2492 26 6 1.5300 -0.0003 -2.4985 27 9 3.4390 -0.7219 -1.2489 28 9 1.5736 -2.0404 -1.2491 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.1488 0.5386 2.5435 36 1 1.7388 0.9948 4.6233 37 1 3.1184 0.1125 5.3539 38 1 -0.4091 0.4728 4.8845 39 1 -1.0373 -0.8749 5.8844 40 1 -0.9477 -2.2821 4.0465 41 1 -0.3241 -0.9331 3.0455 42 1 1.8103 -1.6764 9.1818 43 1 1.8934 1.0274 -2.4985 44 1 1.8936 -0.5138 -3.3884 45 1 0.4400 -0.0002 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110040627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:39 Heat of formation + Delta-G solvation = -93.449542 kcal Electronic energy + Delta-G solvation = -28826.033737 eV Core-core repulsion = 24708.550873 eV Total energy + Delta-G solvation = -4117.482864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.88443 -46.84711 -40.20807 -38.56257 -35.96365 -33.89774 -32.30889 -30.36780 -29.20141 -28.95605 -27.74272 -27.45457 -25.14306 -24.17306 -22.18393 -21.20985 -19.80124 -19.29188 -18.64071 -17.64700 -17.34479 -16.84488 -16.64917 -15.76857 -15.18490 -15.11179 -14.81703 -14.37960 -14.12256 -13.94457 -13.61770 -13.39109 -13.33457 -13.16076 -12.89617 -12.81635 -12.45184 -12.29856 -12.22676 -12.04466 -11.92673 -11.74284 -11.54629 -11.47907 -11.04338 -10.92845 -10.89666 -10.82187 -10.77585 -10.21513 -10.10150 -9.83049 -9.55094 -9.37352 -9.22228 -8.92473 -8.51273 -6.90720 -5.71675 -3.09577 2.79344 3.20964 3.42076 3.45680 3.47168 3.55236 3.90556 4.21037 4.27592 4.47076 4.68437 4.69339 4.79778 5.18173 5.19499 5.20134 5.32785 5.35847 5.37900 5.39670 5.45276 5.48214 5.55791 5.78056 5.82277 5.85463 5.88088 5.95702 6.06897 6.09458 6.29895 6.33641 6.52449 6.59720 6.67004 6.81227 6.95927 6.99551 7.26304 7.52600 7.71727 7.81650 8.17279 8.45165 9.11557 9.73847 10.54193 11.37859 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.003629 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.392371 B = 7713.277139 C = 8078.351710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C -0.144 4.144 4 C 0.517 3.483 5 O -0.523 6.523 6 N -0.706 5.706 7 C 0.129 3.871 8 H 0.082 0.918 9 C -0.139 4.139 10 C 0.153 3.847 11 H 0.154 0.846 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.086 0.914 16 N -0.589 5.589 17 C -0.210 4.210 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.917 3.083 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.313 3.687 26 C -0.198 4.198 27 F -0.192 7.192 28 F -0.191 7.191 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.254 0.746 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 10.960 -18.405 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.202 4.202 4 C 0.301 3.699 5 O -0.398 6.398 6 N -0.357 5.357 7 C 0.023 3.977 8 H 0.100 0.900 9 C -0.179 4.179 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.104 0.896 16 N -0.310 5.310 17 C -0.338 4.338 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.747 3.253 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.276 3.724 26 C -0.256 4.256 27 F -0.173 7.173 28 F -0.171 7.171 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.228 0.772 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.619 10.037 -18.140 21.045 hybrid contribution 0.043 -0.488 0.542 0.730 sum -3.576 9.549 -17.598 20.339 Atomic orbital electron populations 1.21948 0.90448 1.04145 1.03695 1.21923 0.99473 0.98250 0.93552 1.21935 1.02690 0.91832 1.03711 1.19938 0.80882 0.84738 0.84334 1.90780 1.37181 1.25522 1.86365 1.46132 1.52732 1.31358 1.05497 1.23070 0.98636 0.93826 0.82166 0.89984 1.23643 1.02076 0.96197 0.95999 1.23717 0.88568 0.83100 0.99949 0.82931 1.23052 1.01077 0.96422 0.97040 1.22902 0.98404 0.98677 0.96951 1.23264 0.92776 0.95088 0.86977 0.89628 1.46551 1.78754 1.06095 0.99601 1.19032 1.38369 0.88407 0.87972 0.90360 1.24682 1.02567 0.97057 0.96392 1.69422 1.56108 1.20242 1.11528 0.86105 0.78383 0.81131 0.79631 1.21204 1.21584 1.21257 1.20579 0.76011 0.79809 0.95985 1.22906 1.04029 1.02416 0.96236 1.93024 1.30238 1.96541 1.97472 1.93033 1.88192 1.38452 1.97462 0.90607 0.90688 0.90840 0.91006 0.90673 0.90659 0.77174 0.92633 0.91579 0.93763 0.92684 0.93117 0.93175 0.93542 0.89030 0.89869 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.90 37.16 0.29 -0.92 16 2 C -0.13 -1.39 0.36 -155.66 -0.06 -1.45 16 3 C -0.14 -1.14 7.90 37.15 0.29 -0.85 16 4 C 0.52 8.05 6.24 -10.98 -0.07 7.98 16 5 O -0.52 -10.72 14.56 5.56 0.08 -10.64 16 6 N -0.71 -10.32 3.43 -50.26 -0.17 -10.49 16 7 C 0.13 2.42 3.14 -64.25 -0.20 2.22 16 8 H 0.08 1.77 7.70 -51.93 -0.40 1.37 16 9 C -0.14 -2.61 6.31 -23.05 -0.15 -2.75 16 10 C 0.15 3.42 4.67 -62.80 -0.29 3.13 16 11 H 0.15 3.90 5.52 -51.93 -0.29 3.62 16 12 C -0.14 -2.59 6.44 -24.24 -0.16 -2.74 16 13 C -0.13 -2.38 6.31 -24.25 -0.15 -2.53 16 14 C 0.13 2.72 5.37 -62.55 -0.34 2.38 16 15 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 16 N -0.59 -14.77 3.00 -145.48 -0.44 -15.21 16 17 C -0.21 -5.84 10.59 -15.06 -0.16 -6.00 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.92 -26.21 10.47 55.49 0.58 -25.63 16 21 Si 0.92 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 C 0.31 3.80 1.15 -26.73 -0.03 3.77 16 26 C -0.20 -1.43 8.68 37.16 0.32 -1.11 16 27 F -0.19 -2.87 15.62 2.25 0.04 -2.84 16 28 F -0.19 -2.90 15.63 2.25 0.04 -2.86 16 29 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 30 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 31 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 32 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 33 H 0.07 0.39 6.43 -51.93 -0.33 0.06 16 34 H 0.07 0.51 7.56 -51.93 -0.39 0.11 16 35 H 0.39 4.57 6.88 -40.82 -0.28 4.29 16 36 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.04 0.70 7.80 -51.93 -0.40 0.29 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.77 6.49 -51.93 -0.34 0.43 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.09 0.48 6.43 -51.93 -0.33 0.15 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.50 6.43 -51.93 -0.33 0.17 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -32.98 349.20 -7.11 -40.09 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.68 Total: 4.45 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.79 Total: 0.70 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.03 Total: -51.32 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.07 Total: -5.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.98 -7.11 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110040627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.364 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds