Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46963 * 2 1 4 4 H 1.08997 * 109.47099 * 179.51424 * 3 2 1 5 5 C 1.53004 * 109.46996 * 299.51071 * 3 2 1 6 6 C 1.53002 * 109.47282 * 294.42070 * 5 3 2 7 7 F 1.39893 * 109.47110 * 176.68724 * 6 5 3 8 8 F 1.39896 * 109.47199 * 296.69016 * 6 5 3 9 9 C 1.50700 * 109.47258 * 59.50853 * 3 2 1 10 10 O 1.21284 * 120.00110 * 240.00112 * 9 3 2 11 11 N 1.34781 * 119.99587 * 59.99826 * 9 3 2 12 12 C 1.46497 * 119.99518 * 179.97438 * 11 9 3 13 13 H 1.09000 * 110.56423 * 36.45251 * 12 11 9 14 14 C 1.54852 * 110.62927 * 273.54922 * 12 11 9 15 15 C 1.55847 * 103.44444 * 241.35555 * 14 12 11 16 16 H 1.08997 * 115.55931 * 158.80904 * 15 14 12 17 17 C 1.55845 * 105.06235 * 287.41871 * 15 14 12 18 18 C 1.56686 * 102.59875 * 72.30282 * 17 15 14 19 19 C 1.55843 * 110.76149 * 159.44486 * 12 11 9 20 20 H 1.09004 * 115.55796 * 318.99004 * 19 12 11 21 21 N 1.50234 * 101.05293 * 32.93369 * 15 14 12 22 22 C 1.36939 * 130.84091 * 125.31914 * 21 15 14 23 23 H 1.07995 * 120.00559 * 180.02562 * 22 21 15 24 24 C 1.38814 * 119.99510 * 0.02623 * 22 21 15 25 25 N 1.31621 * 120.00235 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99803 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47455 * 89.99608 * 26 24 22 28 28 H 1.48496 * 109.47285 * 210.00178 * 26 24 22 29 29 H 1.48504 * 109.47333 * 329.99743 * 26 24 22 30 30 H 1.09000 * 109.47505 * 65.81688 * 1 2 3 31 31 H 1.08999 * 109.47012 * 185.81620 * 1 2 3 32 32 H 1.09002 * 109.47254 * 305.81654 * 1 2 3 33 33 H 1.09002 * 109.46750 * 240.00504 * 2 1 3 34 34 H 1.08990 * 109.47252 * 119.99830 * 2 1 3 35 35 H 1.09001 * 109.47346 * 54.42538 * 5 3 2 36 36 H 1.08999 * 109.47207 * 174.42495 * 5 3 2 37 37 H 1.09003 * 109.46761 * 56.68326 * 6 5 3 38 38 H 0.96997 * 119.99929 * 0.02562 * 11 9 3 39 39 H 1.09001 * 110.62791 * 122.86368 * 14 12 11 40 40 H 1.09001 * 110.62774 * 359.84087 * 14 12 11 41 41 H 1.09003 * 110.62894 * 191.06454 * 17 15 14 42 42 H 1.08995 * 110.62972 * 314.08862 * 17 15 14 43 43 H 1.08997 * 110.35608 * 241.21643 * 18 17 15 44 44 H 1.08998 * 110.88526 * 118.36127 * 18 17 15 45 45 H 0.97003 * 119.99737 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0087 5 6 1.5400 2.1602 -1.2554 6 6 2.1713 1.5209 -2.4939 7 9 1.6569 2.1270 -3.6450 8 9 3.5585 1.6976 -2.4541 9 6 1.5277 2.1565 1.2243 10 8 0.8314 3.1422 1.1046 11 7 1.8435 1.6994 2.4523 12 6 1.3460 2.3938 3.6425 13 1 0.3378 2.7714 3.4720 14 6 2.3002 3.5467 4.0403 15 6 2.7779 3.1452 5.4684 16 1 3.7092 3.6048 5.7992 17 6 1.5447 3.3857 6.3905 18 6 0.5845 2.2142 5.9894 19 6 1.3770 1.4528 4.8844 20 1 1.0623 0.4250 4.7037 21 7 2.7896 1.6470 5.3576 22 6 3.7862 0.7391 5.5979 23 1 3.6007 -0.3158 5.4592 24 6 5.0349 1.1746 6.0197 25 7 5.2612 2.4602 6.1882 26 14 6.3946 -0.0638 6.3467 27 1 7.1694 -0.2892 5.1001 28 1 7.2976 0.4598 7.4029 29 1 5.7978 -1.3468 6.7973 30 1 -0.3634 0.4210 -0.9374 31 1 -0.3633 -1.0224 0.1041 32 1 -0.3634 0.6014 0.8333 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 0.4551 2.0744 -1.3152 36 1 1.8191 3.2128 -1.2077 37 1 1.9411 0.4556 -2.5101 38 1 2.4007 0.9113 2.5480 39 1 1.7652 4.4960 4.0670 40 1 3.1451 3.6001 3.3537 41 1 1.8314 3.3200 7.4401 42 1 1.0873 4.3515 6.1760 43 1 -0.3491 2.6094 5.5891 44 1 0.3903 1.5621 6.8410 45 1 6.1339 2.7645 6.4826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110653896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = -114.796337 kcal Electronic energy + Delta-G solvation = -28026.665526 eV Core-core repulsion = 23908.256995 eV Total energy + Delta-G solvation = -4118.408530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08226 -47.08505 -40.10833 -38.70501 -35.81037 -33.83321 -32.53686 -30.74121 -29.13674 -28.91613 -28.14835 -26.57155 -24.22700 -23.75852 -22.32335 -20.76537 -19.85161 -19.24330 -18.66344 -17.84636 -17.54950 -17.03881 -16.68147 -15.96773 -15.83493 -15.45693 -14.88978 -14.57262 -14.10507 -13.98829 -13.83035 -13.59083 -13.43866 -13.14757 -13.07112 -12.89895 -12.66756 -12.13705 -12.05080 -11.87099 -11.61488 -11.28069 -11.15402 -11.08047 -10.97940 -10.96472 -10.92768 -10.83920 -10.53492 -10.41462 -10.13076 -9.93563 -9.66185 -9.27287 -9.16382 -8.99808 -8.47862 -6.98919 -5.78097 -3.17710 2.91668 3.33204 3.35471 3.38289 3.40851 3.78673 4.13225 4.24767 4.37011 4.43073 4.70210 4.77494 4.86453 5.08601 5.14060 5.25231 5.32651 5.33978 5.49131 5.59634 5.65311 5.67912 5.75438 5.83927 5.86558 5.91848 6.01569 6.07278 6.11229 6.13991 6.27798 6.39485 6.46351 6.55786 6.71763 6.79993 6.91916 7.09303 7.29951 7.42925 7.75527 7.95596 8.13747 8.57519 9.03166 9.66707 10.47617 11.30653 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.003951 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.810565 B = 7084.820633 C = 8055.585998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.152 4.152 6 C 0.259 3.741 7 F -0.208 7.208 8 F -0.205 7.205 9 C 0.520 3.480 10 O -0.552 6.552 11 N -0.702 5.702 12 C 0.129 3.871 13 H 0.076 0.924 14 C -0.142 4.142 15 C 0.153 3.847 16 H 0.152 0.848 17 C -0.139 4.139 18 C -0.128 4.128 19 C 0.126 3.874 20 H 0.087 0.913 21 N -0.589 5.589 22 C -0.216 4.216 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.914 3.086 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.402 0.598 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -4.023 -11.983 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C -0.133 4.133 4 H 0.124 0.876 5 C -0.191 4.191 6 C 0.205 3.795 7 F -0.189 7.189 8 F -0.187 7.187 9 C 0.305 3.695 10 O -0.430 6.430 11 N -0.351 5.351 12 C 0.022 3.978 13 H 0.094 0.906 14 C -0.183 4.183 15 C 0.046 3.954 16 H 0.169 0.831 17 C -0.178 4.178 18 C -0.168 4.168 19 C 0.018 3.982 20 H 0.105 0.895 21 N -0.310 5.310 22 C -0.344 4.344 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.566 5.566 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.237 0.763 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.790 -3.402 -11.958 15.226 hybrid contribution 1.090 -0.894 0.132 1.416 sum -7.700 -4.296 -11.826 14.751 Atomic orbital electron populations 1.21890 0.95049 1.02146 1.02480 1.21613 0.96924 0.94000 1.03331 1.21328 1.02817 0.96067 0.93134 0.87622 1.22478 1.03147 1.02274 0.91169 1.22033 0.75248 0.98544 0.83625 1.92977 1.86743 1.86277 1.52916 1.92993 1.32077 1.96944 1.96642 1.20147 0.80413 0.84377 0.84522 1.90671 1.38953 1.26629 1.86779 1.45986 1.52251 1.31693 1.05154 1.22639 0.96701 0.94157 0.84262 0.90559 1.23460 0.98034 0.95883 1.00899 1.23718 0.97452 0.84298 0.89901 0.83134 1.23362 0.97988 0.95810 1.00660 1.23178 0.96919 0.97987 0.98695 1.23127 0.87916 0.95696 0.91504 0.89475 1.46500 1.06194 1.02456 1.75870 1.18984 0.89167 0.87964 1.38273 0.90416 1.24703 0.97545 0.96120 1.02114 1.69468 1.22241 1.12176 1.52708 0.86078 0.81854 0.79949 0.77602 1.21691 1.21681 1.20799 0.92438 0.92176 0.92036 0.91061 0.90382 0.87824 0.88525 0.87207 0.76326 0.92904 0.92304 0.92539 0.93220 0.93085 0.92431 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.26 37.16 0.34 -1.08 16 2 C -0.12 -1.07 5.39 -26.73 -0.14 -1.22 16 3 C -0.11 -1.28 2.46 -91.77 -0.23 -1.50 16 4 H 0.11 1.21 7.75 -51.93 -0.40 0.81 16 5 C -0.15 -1.66 4.07 -26.73 -0.11 -1.77 16 6 C 0.26 2.51 5.15 37.16 0.19 2.70 16 7 F -0.21 -2.35 17.34 2.25 0.04 -2.31 16 8 F -0.21 -2.44 16.86 2.25 0.04 -2.40 16 9 C 0.52 7.98 5.77 -10.98 -0.06 7.92 16 10 O -0.55 -10.22 15.63 5.55 0.09 -10.13 16 11 N -0.70 -11.27 5.00 -51.40 -0.26 -11.52 16 12 C 0.13 2.31 2.72 -65.44 -0.18 2.13 16 13 H 0.08 1.38 7.36 -51.93 -0.38 0.99 16 14 C -0.14 -2.87 6.22 -24.23 -0.15 -3.02 16 15 C 0.15 3.42 4.67 -62.80 -0.29 3.13 16 16 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 17 C -0.14 -2.69 6.59 -23.22 -0.15 -2.84 16 18 C -0.13 -2.25 6.49 -23.22 -0.15 -2.40 16 19 C 0.13 2.35 5.05 -62.80 -0.32 2.04 16 20 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 21 N -0.59 -13.55 2.99 -145.82 -0.44 -13.98 16 22 C -0.22 -5.49 10.59 -15.06 -0.16 -5.65 16 23 H 0.08 1.90 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.92 -25.36 10.47 55.49 0.58 -24.78 16 26 Si 0.91 21.00 29.55 -169.99 -5.02 15.97 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H 0.06 0.46 6.64 -51.93 -0.34 0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.69 7.00 -51.93 -0.36 0.33 16 33 H 0.07 0.48 6.49 -51.93 -0.34 0.14 16 34 H 0.08 0.70 7.58 -51.93 -0.39 0.31 16 35 H 0.10 1.07 6.29 -51.93 -0.33 0.75 16 36 H 0.10 1.23 7.94 -51.93 -0.41 0.82 16 37 H 0.11 0.73 6.43 -51.93 -0.33 0.39 16 38 H 0.40 6.22 8.05 -40.82 -0.33 5.89 16 39 H 0.05 1.01 7.79 -51.93 -0.40 0.60 16 40 H 0.06 1.30 7.98 -51.93 -0.41 0.88 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.87 7.79 -51.93 -0.40 0.46 16 43 H 0.05 0.79 7.82 -51.93 -0.41 0.39 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -29.47 356.19 -7.89 -37.36 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.78 Total: 8.34 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.91 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.11 Total: -50.29 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.08 Total: -4.71 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.47 -7.89 -37.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110653896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.438 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds