Wall clock time and date at job start Tue Mar 31 2020 11:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46925 * 2 1 4 4 C 1.50703 * 109.46985 * 120.00128 * 2 1 3 5 5 O 1.21281 * 119.99532 * 120.00262 * 4 2 1 6 6 N 1.34775 * 119.99952 * 299.99765 * 4 2 1 7 7 C 1.46500 * 119.99676 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.56026 * 31.82634 * 7 6 4 9 9 C 1.54849 * 110.62817 * 268.74985 * 7 6 4 10 10 C 1.55846 * 103.44608 * 241.51338 * 9 7 6 11 11 H 1.08998 * 116.12611 * 159.14561 * 10 9 7 12 12 C 1.55843 * 105.06296 * 288.17166 * 10 9 7 13 13 C 1.54858 * 103.44296 * 71.82537 * 12 10 9 14 14 C 1.55840 * 103.44487 * 359.97438 * 13 12 10 15 15 H 1.09004 * 115.56092 * 159.56784 * 14 13 12 16 16 N 1.50232 * 101.05029 * 32.93399 * 10 9 7 17 17 C 1.36942 * 130.83779 * 126.05437 * 16 10 9 18 18 H 1.08005 * 119.99968 * 4.90431 * 17 16 10 19 19 C 1.38810 * 120.00016 * 184.90193 * 17 16 10 20 20 N 1.31614 * 120.00105 * 8.93636 * 19 17 16 21 21 Si 1.86805 * 120.00055 * 188.93501 * 19 17 16 22 22 H 1.48496 * 109.46817 * 94.18901 * 21 19 17 23 23 H 1.48497 * 109.47312 * 214.19312 * 21 19 17 24 24 H 1.48501 * 109.46951 * 334.19111 * 21 19 17 25 25 C 1.53000 * 109.46841 * 240.00199 * 2 1 3 26 26 C 1.52994 * 109.47401 * 59.99636 * 25 2 1 27 27 F 1.39896 * 109.47255 * 179.97438 * 25 2 1 28 28 F 1.39902 * 109.47189 * 300.00073 * 25 2 1 29 29 H 1.09005 * 109.47059 * 299.99907 * 1 2 3 30 30 H 1.09000 * 109.47275 * 59.99712 * 1 2 3 31 31 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46724 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47072 * 299.99773 * 3 2 1 34 34 H 1.08995 * 109.47051 * 60.00281 * 3 2 1 35 35 H 0.96994 * 120.00212 * 359.72614 * 6 4 2 36 36 H 1.09000 * 110.62409 * 0.02562 * 9 7 6 37 37 H 1.08999 * 110.62702 * 123.01995 * 9 7 6 38 38 H 1.09000 * 110.62986 * 313.33836 * 12 10 9 39 39 H 1.08999 * 110.76168 * 190.37710 * 12 10 9 40 40 H 1.09004 * 110.62207 * 241.50982 * 13 12 10 41 41 H 1.08996 * 110.76387 * 118.55724 * 13 12 10 42 42 H 0.97001 * 120.00353 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.47066 * 59.99734 * 26 25 2 44 44 H 1.08995 * 109.47362 * 179.97438 * 26 25 2 45 45 H 1.09003 * 109.47439 * 300.00245 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1956 -0.9403 3.6507 8 1 3.1715 -1.3878 3.4625 9 6 1.1800 -2.0133 4.1146 10 6 0.7742 -1.5353 5.5414 11 1 -0.1706 -1.9195 5.9256 12 6 2.0237 -1.8103 6.4313 13 6 3.0394 -0.7373 5.9673 14 6 2.2654 0.0394 4.8599 15 1 2.6416 1.0375 4.6352 16 7 0.8582 -0.0440 5.3801 17 6 -0.0639 0.9371 5.6304 18 1 -1.0114 0.6848 6.0834 19 6 0.2192 2.2557 5.3020 20 7 1.2913 2.5421 4.5942 21 14 -0.9215 3.6240 5.8645 22 1 -0.4229 4.1893 7.1439 23 1 -0.9601 4.6916 4.8332 24 1 -2.2882 3.0784 6.0636 25 6 2.0400 -0.7212 -1.2493 26 6 1.5300 0.0000 -2.4985 27 9 3.4390 -0.7208 -1.2497 28 9 1.5736 -2.0402 -1.2493 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.1525 0.5410 2.5436 36 1 0.3129 -2.0320 3.4545 37 1 1.6516 -2.9950 4.1582 38 1 2.4127 -2.8119 6.2480 39 1 1.7828 -1.6803 7.4863 40 1 3.9320 -1.2069 5.5540 41 1 3.3025 -0.0729 6.7903 42 1 1.4889 3.4635 4.3644 43 1 1.8932 1.0277 -2.4985 44 1 1.8936 -0.5136 -3.3884 45 1 0.4399 0.0000 -2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111325842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:42 Heat of formation + Delta-G solvation = -102.211784 kcal Electronic energy + Delta-G solvation = -29173.164961 eV Core-core repulsion = 25055.302137 eV Total energy + Delta-G solvation = -4117.862823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.68288 -46.64962 -39.85677 -38.57885 -35.65524 -33.49200 -32.66037 -30.16173 -29.24359 -28.55286 -27.70805 -27.37579 -24.84331 -24.25241 -22.22993 -20.60065 -19.79753 -19.02610 -18.69094 -17.31860 -17.13728 -16.97182 -16.43769 -15.47750 -15.34745 -14.79005 -14.51229 -14.29401 -13.98504 -13.52963 -13.45032 -13.14855 -13.09741 -13.07754 -12.93048 -12.51198 -12.43823 -12.15632 -12.09710 -11.84114 -11.74015 -11.64993 -11.34006 -11.21973 -11.11618 -10.97043 -10.95887 -10.56670 -10.45414 -10.27840 -10.15083 -9.99565 -9.63151 -9.30036 -9.05072 -9.01937 -8.22190 -7.01191 -5.86400 -3.20715 3.11989 3.31117 3.37898 3.38932 3.58653 3.86279 4.13191 4.35580 4.47858 4.61745 4.97085 4.97622 5.10073 5.16922 5.29599 5.43544 5.55805 5.59002 5.65664 5.68433 5.72867 5.75426 5.79019 5.84758 5.86201 5.99759 6.13173 6.16653 6.17949 6.21242 6.25992 6.34420 6.44847 6.63015 6.67494 6.85684 6.96586 6.99934 7.29972 7.44271 7.67359 7.99783 8.28853 8.84500 8.98357 9.61529 10.44677 11.24963 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.005140 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.120627 B = 5445.988559 C = 6618.460475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.145 4.145 4 C 0.516 3.484 5 O -0.546 6.546 6 N -0.688 5.688 7 C 0.126 3.874 8 H 0.076 0.924 9 C -0.139 4.139 10 C 0.130 3.870 11 H 0.086 0.914 12 C -0.131 4.131 13 C -0.137 4.137 14 C 0.152 3.848 15 H 0.150 0.850 16 N -0.591 5.591 17 C -0.207 4.207 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.314 3.686 26 C -0.198 4.198 27 F -0.193 7.193 28 F -0.194 7.194 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.254 0.746 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -2.788 -9.580 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.203 4.203 4 C 0.300 3.700 5 O -0.424 6.424 6 N -0.337 5.337 7 C 0.019 3.981 8 H 0.094 0.906 9 C -0.179 4.179 10 C 0.023 3.977 11 H 0.104 0.896 12 C -0.171 4.171 13 C -0.177 4.177 14 C 0.045 3.955 15 H 0.166 0.834 16 N -0.312 5.312 17 C -0.335 4.335 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.209 1.209 25 C 0.277 3.723 26 C -0.256 4.256 27 F -0.174 7.174 28 F -0.175 7.175 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.252 0.748 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.106 -3.199 -9.628 10.146 hybrid contribution -0.751 0.886 0.395 1.227 sum -0.645 -2.313 -9.232 9.540 Atomic orbital electron populations 1.21935 0.90659 1.03609 1.03976 1.21866 0.99337 0.98393 0.93278 1.21949 1.02411 0.91767 1.04144 1.19945 0.80831 0.84558 0.84699 1.90701 1.38532 1.26413 1.86737 1.45912 1.52074 1.31550 1.04202 1.22603 0.95878 0.93991 0.85614 0.90618 1.23361 0.98837 0.97220 0.98509 1.23002 0.95566 0.86138 0.93020 0.89637 1.22965 0.97424 0.97318 0.99373 1.22974 0.96907 0.97730 1.00073 1.23727 0.85090 0.98306 0.88423 0.83355 1.46544 1.10784 0.99417 1.74467 1.19068 0.96001 0.85991 1.32430 0.90394 1.24646 0.98457 0.96957 1.00661 1.69565 1.27576 1.17979 1.41936 0.86087 0.79719 0.81889 0.77981 1.21822 1.21850 1.20862 1.20597 0.75913 0.79588 0.96217 1.22901 1.04026 1.02520 0.96110 1.93005 1.30339 1.96534 1.97498 1.93004 1.88240 1.38703 1.97504 0.90149 0.90945 0.91352 0.91251 0.91086 0.89696 0.74836 0.92418 0.92517 0.92983 0.92807 0.93095 0.92299 0.93557 0.88966 0.90096 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.90 37.16 0.29 -1.54 16 2 C -0.12 -1.85 0.36 -155.65 -0.06 -1.90 16 3 C -0.15 -1.89 7.90 37.16 0.29 -1.60 16 4 C 0.52 9.83 6.25 -10.98 -0.07 9.76 16 5 O -0.55 -12.19 14.48 5.56 0.08 -12.11 16 6 N -0.69 -13.41 4.86 -51.43 -0.25 -13.66 16 7 C 0.13 2.54 2.81 -65.47 -0.18 2.36 16 8 H 0.08 1.59 7.22 -51.93 -0.37 1.21 16 9 C -0.14 -2.66 6.23 -24.24 -0.15 -2.81 16 10 C 0.13 2.55 5.48 -62.80 -0.34 2.21 16 11 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 12 C -0.13 -2.35 6.44 -24.23 -0.16 -2.51 16 13 C -0.14 -2.63 6.44 -24.24 -0.16 -2.79 16 14 C 0.15 3.29 4.23 -62.82 -0.27 3.02 16 15 H 0.15 3.62 5.75 -51.93 -0.30 3.32 16 16 N -0.59 -13.53 2.98 -145.83 -0.44 -13.96 16 17 C -0.21 -5.19 10.56 -15.06 -0.16 -5.35 16 18 H 0.08 1.94 7.84 -52.48 -0.41 1.53 16 19 C -0.01 -0.30 5.47 -17.43 -0.10 -0.39 16 20 N -0.92 -23.30 10.63 55.49 0.59 -22.71 16 21 Si 0.91 20.39 29.56 -169.99 -5.03 15.37 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.31 4.62 1.15 -26.73 -0.03 4.59 16 26 C -0.20 -1.94 8.68 37.15 0.32 -1.62 16 27 F -0.19 -3.31 15.63 2.25 0.04 -3.28 16 28 F -0.19 -3.31 15.63 2.25 0.04 -3.28 16 29 H 0.08 1.09 7.57 -51.93 -0.39 0.69 16 30 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 31 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 32 H 0.07 0.96 7.80 -51.93 -0.41 0.55 16 33 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 34 H 0.08 1.20 7.56 -51.93 -0.39 0.81 16 35 H 0.41 8.38 7.49 -40.82 -0.31 8.07 16 36 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 37 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 38 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 43 H 0.09 0.76 6.43 -51.93 -0.33 0.42 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.74 6.43 -51.93 -0.33 0.41 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -28.80 352.05 -7.20 -36.01 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.78 Total: 10.89 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.76 Total: 1.44 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.09 Total: -50.34 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.07 Total: -6.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.80 -7.20 -36.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111325842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.206 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds