Wall clock time and date at job start Tue Mar 31 2020 11:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39901 * 109.46948 * 2 1 4 4 F 1.39900 * 109.46921 * 239.99956 * 2 1 3 5 5 C 1.53000 * 109.47159 * 120.00005 * 2 1 3 6 6 C 1.53008 * 109.47086 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.47211 * 180.02562 * 6 5 2 8 8 O 1.21284 * 119.99786 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99701 * 180.27708 * 7 6 5 10 10 C 1.46502 * 119.99689 * 179.72665 * 9 7 6 11 11 C 1.54181 * 111.61165 * 298.58309 * 10 9 7 12 12 C 1.56224 * 103.64761 * 260.32625 * 11 10 9 13 13 C 1.54850 * 103.17736 * 322.66031 * 12 11 10 14 14 C 1.54185 * 104.29761 * 37.76836 * 13 12 11 15 15 H 1.08999 * 112.25557 * 98.78673 * 14 13 12 16 16 C 1.53799 * 109.12411 * 223.08541 * 14 13 12 17 17 N 1.47215 * 106.35765 * 132.67197 * 16 14 13 18 18 C 1.36940 * 126.70207 * 148.74496 * 17 16 14 19 19 H 1.08001 * 119.99761 * 342.11579 * 18 17 16 20 20 C 1.38809 * 120.00411 * 162.11611 * 18 17 16 21 21 N 1.31619 * 120.00391 * 159.78081 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 339.78424 * 20 18 17 23 23 H 1.48496 * 109.47501 * 84.68339 * 22 20 18 24 24 H 1.48504 * 109.47295 * 204.68733 * 22 20 18 25 25 H 1.48500 * 109.47282 * 324.68415 * 22 20 18 26 26 C 1.47217 * 106.59886 * 328.76038 * 17 16 14 27 27 H 1.09009 * 109.47177 * 299.99738 * 1 2 3 28 28 H 1.08991 * 109.47284 * 59.99674 * 1 2 3 29 29 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47431 * 60.00298 * 5 2 1 31 31 H 1.08995 * 109.47346 * 299.99989 * 5 2 1 32 32 H 1.09001 * 109.46712 * 59.99894 * 6 5 2 33 33 H 1.08995 * 109.47050 * 300.00208 * 6 5 2 34 34 H 0.96993 * 120.00120 * 359.72077 * 9 7 6 35 35 H 1.08999 * 110.47068 * 20.30198 * 11 10 9 36 36 H 1.09010 * 110.46761 * 142.88657 * 11 10 9 37 37 H 1.09007 * 110.86441 * 204.05288 * 12 11 10 38 38 H 1.09003 * 110.38923 * 81.04666 * 12 11 10 39 39 H 1.09000 * 110.47157 * 279.06086 * 13 12 11 40 40 H 1.09000 * 110.46640 * 156.46595 * 13 12 11 41 41 H 1.09001 * 110.08118 * 13.44305 * 16 14 13 42 42 H 1.09008 * 110.12265 * 251.91738 * 16 14 13 43 43 H 0.97003 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.08009 * 272.01064 * 26 17 16 45 45 H 1.09004 * 110.12513 * 150.48750 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5701 -0.7218 1.2489 7 6 4.0724 -1.4328 2.4790 8 8 3.2843 -1.8940 3.2772 9 7 5.3975 -1.5515 2.6947 10 6 5.8859 -2.2374 3.8936 11 6 5.4245 -1.5270 5.1819 12 6 6.6725 -0.6897 5.6083 13 6 7.8593 -1.6179 5.2507 14 6 7.4314 -2.2920 3.9317 15 1 7.8733 -1.8102 3.0596 16 6 7.7842 -3.7878 3.9928 17 7 6.5884 -4.5148 3.5361 18 6 6.5624 -5.7111 2.8702 19 1 7.4526 -6.0748 2.3786 20 6 5.3921 -6.4563 2.8271 21 7 5.2282 -7.3709 1.8949 22 14 4.0499 -6.1611 4.0923 23 1 3.1892 -5.0357 3.6476 24 1 3.2256 -7.3882 4.2350 25 1 4.6676 -5.8250 5.4002 26 6 5.4257 -3.7044 3.9347 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6767 -1.7489 1.2493 31 1 1.6767 -0.2075 2.1392 32 1 3.9337 0.3058 1.2486 33 1 3.9330 -1.2358 0.3589 34 1 6.0278 -1.1829 2.0562 35 1 4.5607 -0.8938 4.9796 36 1 5.1897 -2.2571 5.9566 37 1 6.6534 -0.4817 6.6782 38 1 6.7212 0.2373 5.0369 39 1 8.0071 -2.3652 6.0303 40 1 8.7683 -1.0347 5.1032 41 1 8.0278 -4.0734 5.0161 42 1 8.6263 -4.0016 3.3345 43 1 4.4102 -7.8914 1.8646 44 1 5.1126 -3.9703 4.9443 45 1 4.6037 -3.8585 3.2356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111793821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:48 Heat of formation + Delta-G solvation = -146.936844 kcal Electronic energy + Delta-G solvation = -28238.934078 eV Core-core repulsion = 24119.131831 eV Total energy + Delta-G solvation = -4119.802247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.98121 -47.96048 -41.77108 -39.74150 -36.44388 -35.16058 -34.76361 -33.85717 -31.85297 -31.01077 -29.76023 -26.76457 -26.64013 -25.52534 -23.14132 -22.39511 -21.88309 -20.75949 -20.50917 -18.96324 -18.64638 -18.38348 -17.90003 -17.14299 -16.95446 -16.74455 -16.64731 -15.97420 -15.84314 -15.40031 -15.08302 -14.85195 -14.74904 -14.37833 -14.34419 -14.20813 -14.16134 -13.74970 -13.41171 -13.34856 -13.18693 -13.13402 -13.02837 -12.89542 -12.59984 -12.45053 -12.28344 -12.03078 -11.95959 -11.87134 -11.80667 -11.59554 -11.41276 -11.35954 -10.98447 -10.79494 -10.03085 -9.13982 -8.25818 -5.50743 1.23412 1.28221 1.32484 1.61904 2.11041 2.31962 2.81451 2.96807 3.17772 3.26823 3.32554 3.38570 3.45372 3.63851 3.79992 3.89327 4.08193 4.13278 4.20268 4.34936 4.39826 4.49593 4.50261 4.52275 4.60427 4.61599 4.72870 4.78132 4.82164 4.91416 4.92868 4.99505 5.00143 5.01284 5.03494 5.19485 5.27483 5.28837 5.49713 5.57581 5.70453 6.03216 6.56446 6.68107 7.27427 7.46741 8.07409 8.93794 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.004917 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.784650 B = 5693.055713 C = 7136.228461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.285 3.715 3 F -0.206 7.206 4 F -0.214 7.214 5 C -0.143 4.143 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.576 6.576 9 N -0.700 5.700 10 C 0.166 3.834 11 C -0.120 4.120 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.092 4.092 15 H 0.110 0.890 16 C 0.128 3.872 17 N -0.625 5.625 18 C -0.224 4.224 19 H 0.073 0.927 20 C -0.029 4.029 21 N -0.952 5.952 22 Si 0.932 3.068 23 H -0.287 1.287 24 H -0.305 1.305 25 H -0.273 1.273 26 C 0.111 3.889 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.415 0.585 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.261 0.739 44 H 0.013 0.987 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 22.699 1.066 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.249 3.751 3 F -0.187 7.187 4 F -0.195 7.195 5 C -0.182 4.182 6 C -0.178 4.178 7 C 0.296 3.704 8 O -0.456 6.456 9 N -0.352 5.352 10 C 0.078 3.922 11 C -0.159 4.159 12 C -0.146 4.146 13 C -0.145 4.145 14 C -0.112 4.112 15 H 0.128 0.872 16 C 0.003 3.997 17 N -0.351 5.351 18 C -0.352 4.352 19 H 0.091 0.909 20 C -0.224 4.224 21 N -0.600 5.600 22 Si 0.763 3.237 23 H -0.215 1.215 24 H -0.233 1.233 25 H -0.199 1.199 26 C -0.015 4.015 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.697 22.162 1.493 22.376 hybrid contribution -0.659 -0.860 -0.065 1.085 sum -3.356 21.302 1.428 21.612 Atomic orbital electron populations 1.22787 0.89227 1.06380 1.06509 1.21344 0.95427 0.75052 0.83242 1.92987 1.90830 1.38007 1.96863 1.93000 1.90891 1.81251 1.54342 1.22360 0.95537 1.03065 0.97217 1.21641 0.96455 1.03621 0.96130 1.21020 0.82428 0.79195 0.87728 1.90705 1.56290 1.49883 1.48734 1.45867 1.06995 1.57619 1.24709 1.21538 0.94859 0.89905 0.85941 1.22879 0.99331 0.99120 0.94595 1.22707 0.92011 0.97865 1.01969 1.22447 0.99110 0.98577 0.94406 1.22778 0.91460 0.95814 1.01119 0.87203 1.21843 0.89485 0.90663 0.97704 1.45039 1.02672 1.20731 1.66625 1.18679 0.98130 0.94860 1.23556 0.90948 1.25421 0.99478 0.97551 0.99936 1.69902 1.27977 1.28059 1.34013 0.86180 0.80529 0.75160 0.81833 1.21469 1.23299 1.19872 1.22107 0.91099 0.91778 0.96531 0.87626 0.89091 0.88729 0.89536 0.87271 0.85506 0.87972 0.74811 0.91382 0.92859 0.89939 0.89805 0.91466 0.88109 0.94678 0.92561 0.92969 0.96928 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 9.38 71.98 0.68 -2.00 16 2 C 0.29 5.63 2.11 30.59 0.06 5.70 16 3 F -0.21 -4.22 16.54 44.97 0.74 -3.47 16 4 F -0.21 -5.19 16.54 44.97 0.74 -4.45 16 5 C -0.14 -3.20 4.09 30.60 0.13 -3.08 16 6 C -0.14 -3.20 5.46 29.85 0.16 -3.04 16 7 C 0.51 15.99 6.81 87.66 0.60 16.59 16 8 O -0.58 -23.06 13.48 -3.04 -0.04 -23.10 16 9 N -0.70 -20.28 5.23 -417.28 -2.18 -22.46 16 10 C 0.17 5.49 0.94 4.85 0.00 5.49 16 11 C -0.12 -3.53 5.75 32.11 0.18 -3.35 16 12 C -0.11 -2.12 6.92 32.35 0.22 -1.90 16 13 C -0.11 -2.17 6.38 31.63 0.20 -1.97 16 14 C -0.09 -2.51 3.67 -9.54 -0.03 -2.54 16 15 H 0.11 2.45 7.69 -2.39 -0.02 2.44 16 16 C 0.13 4.72 6.78 86.51 0.59 5.31 16 17 N -0.63 -30.86 3.21 -695.24 -2.23 -33.10 16 18 C -0.22 -13.23 10.67 84.03 0.90 -12.33 16 19 H 0.07 4.51 8.06 -2.91 -0.02 4.48 16 20 C -0.03 -1.81 5.45 84.86 0.46 -1.35 16 21 N -0.95 -62.22 13.97 21.65 0.30 -61.92 16 22 Si 0.93 51.94 24.36 68.60 1.67 53.61 16 23 H -0.29 -16.40 6.37 99.48 0.63 -15.77 16 24 H -0.30 -16.80 7.11 99.48 0.71 -16.09 16 25 H -0.27 -14.83 6.49 99.48 0.65 -14.18 16 26 C 0.11 5.17 3.51 86.51 0.30 5.47 16 27 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.09 2.25 8.10 -2.39 -0.02 2.23 16 31 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 32 H 0.13 2.18 7.80 -2.39 -0.02 2.16 16 33 H 0.10 2.38 7.80 -2.39 -0.02 2.36 16 34 H 0.41 9.04 8.28 -92.71 -0.77 8.27 16 35 H 0.07 2.08 6.69 -2.39 -0.02 2.07 16 36 H 0.05 1.76 7.18 -2.38 -0.02 1.74 16 37 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.47 7.17 -2.39 -0.02 1.46 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.27 7.12 -2.39 -0.02 1.25 16 42 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 44 H 0.01 0.66 5.15 -2.39 -0.01 0.64 16 45 H 0.04 1.90 4.37 -2.39 -0.01 1.89 16 Total: -1.00 -79.14 350.04 3.56 -75.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.10 Total: 12.32 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 4.45 Total: 7.00 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -4.11 Total: -117.48 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.49 Total: -7.92 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 1.67 Total: 53.61 kcal Total: -79.14 3.56 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111793821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.360 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds