Wall clock time and date at job start Tue Mar 31 2020 10:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.54166 * 111.81953 * 298.97995 * 11 10 9 13 13 C 1.54840 * 104.32903 * 261.25095 * 12 11 10 14 14 C 1.54843 * 102.73500 * 321.81229 * 13 12 11 15 15 C 1.54169 * 104.32556 * 38.18879 * 14 13 12 16 16 H 1.09001 * 111.08758 * 98.31664 * 15 14 13 17 17 C 1.54331 * 109.65500 * 223.42034 * 15 14 13 18 18 N 1.48119 * 104.69230 * 137.80055 * 17 15 14 19 19 C 1.34777 * 127.84127 * 140.28883 * 18 17 15 20 20 O 1.21282 * 119.99784 * 179.97438 * 19 18 17 21 21 C 1.50693 * 120.00080 * 359.97438 * 19 18 17 22 22 C 1.53005 * 109.47207 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.46934 * 179.97438 * 22 21 19 24 24 F 1.39903 * 109.47057 * 65.00892 * 23 22 21 25 25 F 1.39909 * 109.46717 * 185.00038 * 23 22 21 26 26 C 1.50619 * 104.41227 * 319.99292 * 18 17 15 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 30 30 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 31 31 H 1.08998 * 110.46117 * 19.96601 * 12 11 10 32 32 H 1.08999 * 110.45645 * 142.53729 * 12 11 10 33 33 H 1.08994 * 110.76022 * 80.12508 * 13 12 11 34 34 H 1.09005 * 110.75501 * 203.32007 * 13 12 11 35 35 H 1.08999 * 110.46190 * 156.89915 * 14 13 12 36 36 H 1.08999 * 110.46634 * 279.35005 * 14 13 12 37 37 H 1.09005 * 110.38930 * 256.60370 * 17 15 14 38 38 H 1.08994 * 110.39310 * 18.88187 * 17 15 14 39 39 H 1.09005 * 109.47383 * 299.99856 * 21 19 18 40 40 H 1.09006 * 109.47500 * 59.99735 * 21 19 18 41 41 H 1.08992 * 109.46931 * 300.00089 * 22 21 19 42 42 H 1.08997 * 109.46645 * 60.00078 * 22 21 19 43 43 H 1.08995 * 109.47467 * 305.00264 * 23 22 21 44 44 H 1.09004 * 110.78240 * 281.65496 * 26 18 17 45 45 H 1.09001 * 111.15169 * 158.47151 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 6 0.1637 -4.8114 1.2316 13 6 0.8192 -5.8435 2.1816 14 6 1.2825 -6.9562 1.2095 15 6 1.7801 -6.1932 -0.0343 16 1 2.8648 -6.0865 -0.0210 17 6 1.2685 -6.8925 -1.3115 18 7 0.8413 -5.7868 -2.1997 19 6 1.0095 -5.6854 -3.5331 20 8 0.5993 -4.7086 -4.1234 21 6 1.7071 -6.7857 -4.2904 22 6 1.7649 -6.4249 -5.7762 23 6 2.4738 -7.5418 -6.5449 24 9 1.7097 -8.7118 -6.4778 25 9 2.6281 -7.1618 -7.8826 26 6 0.1693 -4.8036 -1.2777 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 2.6846 -3.7098 -0.9038 30 1 2.6846 -3.7192 0.8761 31 1 0.1571 -3.8223 1.6896 32 1 -0.8495 -5.1199 0.9744 33 1 1.6713 -5.4044 2.7004 34 1 0.0909 -6.2288 2.8952 35 1 2.0937 -7.5348 1.6513 36 1 0.4480 -7.6078 0.9505 37 1 2.0699 -7.4660 -1.7773 38 1 0.4248 -7.5414 -1.0771 39 1 2.7199 -6.9060 -3.9057 40 1 1.1575 -7.7186 -4.1645 41 1 0.7521 -6.3049 -6.1606 42 1 2.3143 -5.4921 -5.9024 43 1 3.4537 -7.7218 -6.1030 44 1 -0.8400 -5.1329 -1.0303 45 1 0.1474 -3.8056 -1.7154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112472898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:28 Heat of formation + Delta-G solvation = -137.813293 kcal Electronic energy + Delta-G solvation = -27330.880684 eV Core-core repulsion = 23211.474063 eV Total energy + Delta-G solvation = -4119.406621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.17751 -47.18922 -40.45319 -38.72053 -34.81261 -34.31810 -33.94176 -31.64017 -29.76466 -29.39386 -27.38889 -25.53347 -25.35646 -23.58960 -22.52971 -21.94215 -20.35097 -19.12942 -18.44941 -17.85268 -17.58837 -17.23241 -16.87930 -16.06322 -15.84132 -15.48963 -15.05398 -14.94290 -14.56370 -14.10426 -13.81302 -13.66898 -13.53053 -13.39061 -13.11528 -12.98478 -12.78858 -12.70744 -12.35117 -12.25329 -11.94428 -11.57655 -11.45589 -11.21936 -11.13399 -10.97352 -10.84290 -10.78382 -10.57734 -10.54425 -10.36243 -10.21154 -9.93550 -9.68955 -9.61523 -8.85833 -8.59707 -6.89477 -5.74341 -3.02599 2.71779 2.88628 3.45345 3.50799 3.53112 3.60318 3.96232 4.20839 4.30685 4.38340 4.50117 4.61417 4.71739 4.78298 4.88071 4.99802 5.10447 5.19876 5.30017 5.32977 5.39822 5.52535 5.55998 5.58190 5.63224 5.65565 5.77479 5.78439 5.86284 5.92802 6.05999 6.14408 6.16829 6.21648 6.40222 6.45535 6.47451 6.70178 6.76058 6.83140 7.67455 7.72605 8.24818 8.44329 9.55917 10.12634 10.47352 11.48581 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011311 B = 0.003679 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.774789 B = 7609.065151 C = 9541.956342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.175 3.825 11 C -0.075 4.075 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.115 4.115 15 C -0.098 4.098 16 H 0.088 0.912 17 C 0.108 3.892 18 N -0.625 5.625 19 C 0.531 3.469 20 O -0.534 6.534 21 C -0.136 4.136 22 C -0.157 4.157 23 C 0.262 3.738 24 F -0.208 7.208 25 F -0.206 7.206 26 C 0.116 3.884 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.017 0.983 30 H 0.022 0.978 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -21.513 -3.428 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.047 3.953 11 C -0.076 4.076 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.118 4.118 16 H 0.107 0.893 17 C -0.015 4.015 18 N -0.359 5.359 19 C 0.320 3.680 20 O -0.410 6.410 21 C -0.176 4.176 22 C -0.196 4.196 23 C 0.209 3.791 24 F -0.189 7.189 25 F -0.187 7.187 26 C -0.005 4.005 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.835 -20.870 -3.922 21.579 hybrid contribution 0.150 0.842 -0.050 0.857 sum 3.985 -20.028 -3.971 20.803 Atomic orbital electron populations 1.69659 1.05072 1.25514 1.57797 1.24713 0.95494 0.97612 1.02987 0.86141 0.78774 0.84259 0.77159 1.20627 1.21871 1.21908 1.19233 0.90991 0.84144 1.42598 0.91286 1.42363 1.05829 0.99821 1.89352 1.20509 0.92414 0.84770 0.97605 1.22261 0.95970 0.94795 0.94594 1.22485 0.97429 1.00750 0.94612 1.22473 1.00306 0.95805 0.97295 1.22426 1.00294 0.97431 0.95139 1.22718 1.00534 0.94662 0.93865 0.89334 1.22518 0.99188 0.89458 0.90338 1.49625 1.58074 1.22416 1.05781 1.19966 0.79818 0.87670 0.80593 1.90776 1.50479 1.32595 1.67142 1.21535 1.02730 0.99022 0.94308 1.22426 1.04497 0.98459 0.94194 1.21957 0.95737 0.82091 0.79334 1.92981 1.78680 1.51008 1.96271 1.92996 1.96537 1.91517 1.37652 1.23106 0.94404 0.94750 0.88230 0.93575 0.78147 0.96551 0.96070 0.89665 0.91849 0.91367 0.91840 0.91774 0.91525 0.90757 0.90914 0.88399 0.88268 0.88555 0.87679 0.87149 0.91211 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.17 4.59 -59.90 -0.27 -18.44 16 10 C 0.17 3.45 5.20 -4.04 -0.02 3.43 16 11 C -0.07 -1.13 0.61 -152.19 -0.09 -1.22 16 12 C -0.11 -1.64 5.68 -25.15 -0.14 -1.78 16 13 C -0.12 -1.37 6.90 -24.79 -0.17 -1.54 16 14 C -0.12 -1.07 6.38 -25.15 -0.16 -1.23 16 15 C -0.10 -1.09 3.52 -88.30 -0.31 -1.40 16 16 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 17 C 0.11 1.06 6.48 -2.45 -0.02 1.04 16 18 N -0.62 -8.63 3.36 -167.32 -0.56 -9.20 16 19 C 0.53 7.79 7.92 -10.99 -0.09 7.70 16 20 O -0.53 -10.45 16.31 5.56 0.09 -10.36 16 21 C -0.14 -1.27 4.59 -27.88 -0.13 -1.39 16 22 C -0.16 -1.53 4.73 -26.73 -0.13 -1.66 16 23 C 0.26 2.15 5.29 37.16 0.20 2.34 16 24 F -0.21 -2.01 17.02 2.25 0.04 -1.97 16 25 F -0.21 -2.18 17.34 2.25 0.04 -2.14 16 26 C 0.12 1.89 6.08 -1.04 -0.01 1.88 16 27 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.38 10.02 6.60 -40.82 -0.27 9.75 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 32 H 0.06 0.84 7.19 -51.93 -0.37 0.46 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.55 7.25 -51.93 -0.38 0.17 16 37 H 0.07 0.54 7.30 -51.93 -0.38 0.16 16 38 H 0.07 0.62 7.26 -51.93 -0.38 0.24 16 39 H 0.10 0.68 7.95 -51.93 -0.41 0.26 16 40 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 41 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 1.04 7.20 -51.93 -0.37 0.67 16 45 H 0.10 2.10 6.98 -51.93 -0.36 1.74 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -33.94 363.33 -7.85 -41.78 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.04 Total: 5.87 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.31 Total: -1.14 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.11 Total: -55.24 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.94 -7.85 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112472898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.029 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds