Wall clock time and date at job start Tue Mar 31 2020 11:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47220 * 239.99864 * 2 1 3 5 5 C 1.50711 * 109.46691 * 60.00101 * 4 2 1 6 6 O 1.21282 * 119.99880 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99520 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99628 * 179.97438 * 7 5 4 9 9 H 1.08998 * 115.51516 * 350.41578 * 8 7 5 10 10 C 1.53000 * 117.44139 * 205.00383 * 8 7 5 11 11 H 1.09000 * 119.54155 * 4.11217 * 10 8 7 12 12 C 1.54390 * 118.12311 * 159.21531 * 10 8 7 13 13 N 1.51829 * 102.86743 * 88.01454 * 12 10 8 14 14 C 1.36937 * 127.60894 * 140.54652 * 13 12 10 15 15 H 1.07997 * 120.00129 * 194.65167 * 14 13 12 16 16 C 1.38809 * 120.00006 * 14.64887 * 14 13 12 17 17 N 1.31624 * 120.00121 * 9.01819 * 16 14 13 18 18 Si 1.86803 * 120.00110 * 189.01186 * 16 14 13 19 19 H 1.48505 * 109.46976 * 90.00295 * 18 16 14 20 20 H 1.48496 * 109.47464 * 210.00033 * 18 16 14 21 21 H 1.48495 * 109.47155 * 330.00676 * 18 16 14 22 22 C 1.48144 * 104.55084 * 320.27160 * 13 12 10 23 23 C 1.52999 * 117.44375 * 135.76206 * 8 7 5 24 24 H 1.09000 * 119.53859 * 355.88129 * 23 8 7 25 25 C 1.53005 * 109.47236 * 120.00262 * 2 1 3 26 26 C 1.53001 * 109.46692 * 299.99926 * 25 2 1 27 27 F 1.39896 * 109.47319 * 65.00414 * 26 25 2 28 28 F 1.39908 * 109.46605 * 185.00190 * 26 25 2 29 29 H 1.09003 * 109.47111 * 299.99838 * 1 2 3 30 30 H 1.08997 * 109.47290 * 59.99895 * 1 2 3 31 31 H 1.09002 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47275 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47795 * 300.00019 * 3 2 1 34 34 H 1.09000 * 109.47270 * 60.00506 * 3 2 1 35 35 H 1.09000 * 109.47559 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47740 * 300.00280 * 4 2 1 37 37 H 0.96998 * 120.00374 * 359.97438 * 7 5 4 38 38 H 1.09004 * 110.40802 * 205.97136 * 12 10 8 39 39 H 1.09003 * 110.40341 * 328.39863 * 12 10 8 40 40 H 0.96998 * 120.00027 * 179.97438 * 17 16 14 41 41 H 1.08997 * 110.40936 * 281.07644 * 22 13 12 42 42 H 1.08999 * 110.40606 * 158.64402 * 22 13 12 43 43 H 1.09000 * 109.46909 * 179.97438 * 25 2 1 44 44 H 1.08997 * 109.47293 * 59.99951 * 25 2 1 45 45 H 1.08998 * 109.46900 * 304.99535 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 8 0.8399 0.9750 -2.3684 7 7 1.8636 -0.4710 -3.7038 8 6 1.3748 0.2194 -4.9000 9 1 0.6267 0.9922 -4.7233 10 6 1.2520 -0.6000 -6.1862 11 1 1.4611 -1.6695 -6.1642 12 6 0.3143 -0.0768 -7.2956 13 7 1.2202 0.8378 -8.1005 14 6 1.2619 0.9862 -9.4612 15 1 2.1002 1.4851 -9.9246 16 6 0.2266 0.4955 -10.2449 17 7 -0.8737 0.0486 -9.6774 18 14 0.3948 0.4696 -12.1052 19 1 0.9958 -0.8203 -12.5299 20 1 -0.9460 0.6189 -12.7257 21 1 1.2685 1.5893 -12.5389 22 6 2.0416 1.5362 -7.0846 23 6 2.3717 0.4510 -6.0373 24 1 3.4148 0.1643 -5.9043 25 6 2.0400 -0.7213 1.2492 26 6 1.5300 0.0000 2.4985 27 9 0.1357 -0.0988 2.5575 28 9 2.0879 -0.5899 3.6379 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7209 -1.2495 36 1 1.6767 -1.7489 -1.2493 37 1 2.4219 -1.2592 -3.7928 38 1 -0.0418 -0.9018 -7.9127 39 1 -0.5263 0.4630 -6.8594 40 1 -1.5972 -0.2940 -10.2251 41 1 1.4728 2.3456 -6.6269 42 1 2.9567 1.9209 -7.5347 43 1 3.1300 -0.7217 1.2490 44 1 1.6767 -1.7490 1.2492 45 1 1.8184 1.0502 2.4548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114599668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:52 Heat of formation + Delta-G solvation = -83.812950 kcal Electronic energy + Delta-G solvation = -26620.951116 eV Core-core repulsion = 22503.886126 eV Total energy + Delta-G solvation = -4117.064990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.30542 -47.30394 -40.32384 -38.65117 -36.91093 -34.39296 -32.69985 -30.58981 -29.95425 -28.13591 -27.42865 -27.15899 -25.57634 -24.06155 -22.00928 -20.62172 -20.35724 -19.29133 -19.19282 -18.01194 -17.53520 -17.09599 -16.86787 -16.23512 -16.12968 -15.49354 -14.71852 -14.69443 -14.47357 -14.18081 -14.05836 -13.81031 -13.62578 -13.27741 -13.14166 -12.90165 -12.72339 -12.38083 -12.19879 -11.98805 -11.87421 -11.50466 -11.40661 -11.35526 -11.19846 -11.00629 -10.96120 -10.84053 -10.68249 -10.44412 -10.19352 -10.13519 -9.70873 -9.51826 -9.21286 -8.76205 -8.35387 -6.89779 -5.80255 -3.13599 2.58276 3.03185 3.37635 3.42821 3.44932 3.53122 3.88590 4.12113 4.20041 4.28072 4.45576 4.49658 4.60920 4.74727 4.97622 5.09906 5.12116 5.15070 5.25604 5.32405 5.34784 5.35614 5.47301 5.53995 5.59448 5.76526 5.79849 5.86489 5.88862 5.98460 6.09646 6.16901 6.32837 6.46327 6.51974 6.66704 6.79106 6.86647 7.28190 7.49336 7.54780 7.68262 8.13177 8.27154 9.04985 9.71567 10.48011 11.34699 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.046600 B = 0.002117 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.712607 B =13225.322146 C =13392.493428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.042 4.042 3 C -0.163 4.163 4 C -0.131 4.131 5 C 0.516 3.484 6 O -0.528 6.528 7 N -0.699 5.699 8 C 0.095 3.905 9 H 0.132 0.868 10 C -0.178 4.178 11 H 0.101 0.899 12 C 0.185 3.815 13 N -0.599 5.599 14 C -0.225 4.225 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.158 3.842 23 C -0.183 4.183 24 H 0.102 0.898 25 C -0.162 4.162 26 C 0.259 3.741 27 F -0.198 7.198 28 F -0.211 7.211 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.398 0.602 38 H 0.092 0.908 39 H 0.032 0.968 40 H 0.254 0.746 41 H 0.026 0.974 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.945 -3.184 23.074 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.043 4.043 3 C -0.220 4.220 4 C -0.171 4.171 5 C 0.303 3.697 6 O -0.406 6.406 7 N -0.347 5.347 8 C -0.011 4.011 9 H 0.149 0.851 10 C -0.199 4.199 11 H 0.119 0.881 12 C 0.060 3.940 13 N -0.323 5.323 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.564 5.564 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.032 3.968 23 C -0.204 4.204 24 H 0.120 0.880 25 C -0.200 4.200 26 C 0.205 3.795 27 F -0.180 7.180 28 F -0.192 7.192 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.232 0.768 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.285 -2.515 22.932 24.193 hybrid contribution 0.455 -0.775 -0.899 1.271 sum 7.740 -3.290 22.034 23.584 Atomic orbital electron populations 1.22535 0.93016 1.02347 1.05341 1.20173 0.97404 0.95489 0.91223 1.22258 1.00280 0.95174 1.04246 1.21724 1.02362 1.00606 0.92432 1.20480 0.80253 0.84686 0.84266 1.90590 1.37548 1.26311 1.86114 1.45461 1.52866 1.31222 1.05147 1.21878 1.00147 0.99276 0.79771 0.85081 1.24584 1.02587 0.96381 0.96392 0.88114 1.21707 0.89485 0.94663 0.88103 1.46072 1.41130 1.44104 1.01024 1.19018 1.02815 1.33765 0.79666 0.90514 1.24876 0.95228 1.02088 0.98248 1.69881 1.05388 1.47195 1.33898 0.86107 0.76850 0.77813 0.84913 1.21566 1.21665 1.20577 1.21054 0.95098 0.91812 0.88869 1.24376 0.94988 1.01826 0.99232 0.88016 1.22751 1.02972 1.01265 0.93046 1.22049 0.74771 0.99271 0.83385 1.92915 1.31257 1.97475 1.96310 1.92981 1.85096 1.86875 1.54273 0.90778 0.89398 0.93344 0.93024 0.88669 0.93056 0.88812 0.88724 0.76838 0.88973 0.95005 0.93557 0.95646 0.93041 0.88723 0.89328 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 7.42 37.15 0.28 -1.51 16 2 C -0.04 -0.34 0.54 -154.51 -0.08 -0.43 16 3 C -0.16 -1.39 7.83 37.15 0.29 -1.10 16 4 C -0.13 -1.01 4.77 -27.88 -0.13 -1.14 16 5 C 0.52 6.11 7.24 -10.98 -0.08 6.03 16 6 O -0.53 -8.04 10.91 5.56 0.06 -7.97 16 7 N -0.70 -8.38 5.56 -53.80 -0.30 -8.68 16 8 C 0.10 1.52 5.97 -67.93 -0.41 1.11 16 9 H 0.13 2.40 7.40 -51.93 -0.38 2.02 16 10 C -0.18 -3.24 6.96 -89.22 -0.62 -3.86 16 11 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 12 C 0.19 4.37 5.92 -0.29 0.00 4.36 16 13 N -0.60 -15.20 3.45 -165.71 -0.57 -15.77 16 14 C -0.22 -6.21 10.36 -15.06 -0.16 -6.37 16 15 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 16 C -0.01 -0.21 5.42 -17.43 -0.09 -0.30 16 17 N -0.92 -26.70 10.82 55.49 0.60 -26.10 16 18 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.16 3.30 7.05 -2.41 -0.02 3.28 16 23 C -0.18 -3.14 7.06 -89.22 -0.63 -3.77 16 24 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 25 C -0.16 -1.02 4.61 -26.73 -0.12 -1.14 16 26 C 0.26 1.89 4.97 37.16 0.18 2.07 16 27 F -0.20 -1.89 13.99 2.25 0.03 -1.85 16 28 F -0.21 -1.87 17.34 2.25 0.04 -1.83 16 29 H 0.07 0.74 5.39 -51.93 -0.28 0.46 16 30 H 0.09 1.13 5.51 -51.93 -0.29 0.85 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.09 1.11 5.51 -51.93 -0.29 0.82 16 34 H 0.05 0.38 6.32 -51.93 -0.33 0.05 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.66 8.83 -40.82 -0.36 3.30 16 38 H 0.09 2.42 6.56 -51.93 -0.34 2.08 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.11 0.61 6.17 -51.93 -0.32 0.29 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -31.62 356.50 -8.17 -39.79 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.78 Total: 3.01 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.59 Total: -2.76 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.27 Total: -50.55 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.06 Total: -7.97 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.07 Total: -3.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.62 -8.17 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114599668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.023 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds