Wall clock time and date at job start Tue Mar 31 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.69906 * 2 1 4 4 C 1.53195 * 109.58591 * 239.64486 * 2 1 3 5 5 C 1.53036 * 109.31041 * 185.57932 * 4 2 1 6 6 C 1.53045 * 109.53851 * 61.36396 * 5 4 2 7 7 H 1.09003 * 109.49535 * 58.59096 * 6 5 4 8 8 N 1.46504 * 109.49739 * 178.64796 * 6 5 4 9 9 C 1.34775 * 120.00210 * 204.93673 * 8 6 5 10 10 O 1.21284 * 119.99919 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00063 * 180.02562 * 9 8 6 12 12 C 1.53002 * 112.84942 * 50.32934 * 11 9 8 13 13 F 1.39888 * 109.47223 * 309.66615 * 12 11 9 14 14 F 1.39903 * 109.47139 * 69.67094 * 12 11 9 15 15 C 1.53783 * 113.61348 * 279.13331 * 11 9 8 16 16 C 1.53958 * 87.01951 * 220.04874 * 15 11 9 17 17 C 1.53776 * 113.61409 * 181.52773 * 11 9 8 18 18 C 1.53188 * 109.31495 * 298.63482 * 6 5 4 19 19 N 1.46922 * 108.77472 * 54.63385 * 18 6 5 20 20 C 1.36933 * 120.63011 * 126.39615 * 19 18 6 21 21 H 1.08007 * 120.00075 * 209.00871 * 20 19 18 22 22 C 1.38809 * 120.00370 * 29.00757 * 20 19 18 23 23 N 1.31625 * 119.99585 * 15.03570 * 22 20 19 24 24 Si 1.86799 * 120.00463 * 195.03336 * 22 20 19 25 25 H 1.48501 * 109.46888 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47039 * 119.99955 * 24 22 20 27 27 H 1.48501 * 109.47130 * 240.00354 * 24 22 20 28 28 H 1.08995 * 109.47187 * 180.35326 * 1 2 3 29 29 H 1.08993 * 109.46871 * 300.35739 * 1 2 3 30 30 H 1.09005 * 109.46966 * 60.35698 * 1 2 3 31 31 H 1.08997 * 109.50199 * 65.62508 * 4 2 1 32 32 H 1.09004 * 109.49870 * 305.52980 * 4 2 1 33 33 H 1.08997 * 109.46110 * 301.34345 * 5 4 2 34 34 H 1.09003 * 109.45916 * 181.38189 * 5 4 2 35 35 H 0.97010 * 119.99655 * 24.93432 * 8 6 5 36 36 H 1.09007 * 109.46504 * 189.66752 * 12 11 9 37 37 H 1.09005 * 113.61420 * 334.57110 * 15 11 9 38 38 H 1.08994 * 113.61277 * 105.47122 * 15 11 9 39 39 H 1.08996 * 113.53525 * 270.80637 * 16 15 11 40 40 H 1.09000 * 113.73844 * 139.94492 * 16 15 11 41 41 H 1.08999 * 113.61607 * 254.52899 * 17 11 9 42 42 H 1.09005 * 113.61744 * 25.35173 * 17 11 9 43 43 H 1.08996 * 109.58931 * 174.42378 * 18 6 5 44 44 H 1.09004 * 109.58300 * 294.84975 * 18 6 5 45 45 H 0.96995 * 119.99770 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 6 3.9569 -1.6657 0.0636 7 1 3.4983 -2.6529 0.0052 8 7 5.4142 -1.8061 0.1172 9 6 5.9674 -2.8484 0.7684 10 8 5.2587 -3.6699 1.3105 11 6 7.4664 -2.9924 0.8240 12 6 8.1699 -1.7117 1.2778 13 9 7.7039 -0.6308 0.5219 14 9 7.8989 -1.4854 2.6316 15 6 8.0733 -3.6117 -0.4461 16 6 9.0151 -4.3977 0.4842 17 6 7.9370 -4.2515 1.5709 18 6 3.4650 -0.9470 1.3238 19 7 2.0226 -0.6996 1.1945 20 6 1.1537 -1.1131 2.1688 21 1 0.1359 -1.3675 1.9121 22 6 1.5810 -1.2053 3.4862 23 7 2.7041 -0.6270 3.8558 24 14 0.5621 -2.1501 4.7347 25 1 -0.6462 -2.7024 4.0712 26 1 1.3713 -3.2625 5.2939 27 1 0.1514 -1.2368 5.8313 28 1 -0.3633 -1.0276 0.0063 29 1 -0.3633 0.5193 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 1.7661 -0.1669 -2.1369 32 1 1.6030 -1.7253 -1.2914 33 1 4.0061 0.1473 -1.0993 34 1 3.9378 -1.3449 -2.0668 35 1 5.9810 -1.1488 -0.3161 36 1 9.2453 -1.8180 1.1353 37 1 7.3781 -4.2436 -0.9989 38 1 8.5873 -2.8901 -1.0809 39 1 9.9407 -3.8698 0.7134 40 1 9.1821 -5.4282 0.1706 41 1 8.3412 -4.0458 2.5621 42 1 7.2039 -5.0582 1.5719 43 1 3.6518 -1.5718 2.1972 44 1 3.9903 0.0020 1.4317 45 1 3.0029 -0.6918 4.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:01 Heat of formation + Delta-G solvation = -99.649907 kcal Electronic energy + Delta-G solvation = -28800.703705 eV Core-core repulsion = 24682.951973 eV Total energy + Delta-G solvation = -4117.751732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.06719 -47.03895 -40.28773 -38.33671 -37.06408 -34.32568 -32.75602 -30.79239 -29.79519 -28.51246 -26.12195 -25.87543 -25.05962 -24.29759 -22.22946 -21.24877 -20.16446 -19.56558 -18.99865 -17.90259 -17.19900 -16.93256 -16.38493 -16.10273 -15.47412 -15.12945 -14.79204 -14.23918 -14.06456 -13.83243 -13.72481 -13.56338 -13.36293 -13.32220 -12.79556 -12.69371 -12.67579 -12.37285 -12.20299 -11.88111 -11.75946 -11.45642 -11.27027 -11.07187 -10.82961 -10.71704 -10.66317 -10.58900 -10.45216 -10.33398 -10.19536 -9.89823 -9.69208 -9.38895 -9.24282 -8.45809 -8.35146 -6.54498 -5.66368 -3.11440 2.84330 3.41091 3.46878 3.53763 3.55304 3.60558 3.94341 4.07357 4.20572 4.43538 4.58407 4.66747 4.81836 5.02683 5.21433 5.38682 5.40648 5.43148 5.51954 5.56485 5.59578 5.63725 5.70632 5.75101 5.84379 6.02244 6.10454 6.16331 6.32225 6.35869 6.43658 6.49808 6.56535 6.67831 6.80708 7.01523 7.09478 7.18017 7.40195 7.83831 7.92125 7.99232 8.56868 8.65496 9.31541 9.96021 10.51339 11.41354 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.004964 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.280946 B = 5639.805364 C = 6633.965793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.115 3.885 7 H 0.080 0.920 8 N -0.714 5.714 9 C 0.526 3.474 10 O -0.523 6.523 11 C -0.173 4.173 12 C 0.292 3.708 13 F -0.197 7.197 14 F -0.190 7.190 15 C -0.110 4.110 16 C -0.145 4.145 17 C -0.103 4.103 18 C 0.169 3.831 19 N -0.584 5.584 20 C -0.253 4.253 21 H 0.071 0.929 22 C 0.005 3.995 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.396 0.604 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.028 -3.294 -11.354 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.098 0.902 8 N -0.367 5.367 9 C 0.309 3.691 10 O -0.399 6.399 11 C -0.178 4.178 12 C 0.238 3.762 13 F -0.178 7.178 14 F -0.172 7.172 15 C -0.148 4.148 16 C -0.182 4.182 17 C -0.141 4.141 18 C 0.042 3.958 19 N -0.307 5.307 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.194 4.194 23 N -0.542 5.542 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.233 0.767 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.035 0.965 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.518 -3.827 -10.774 17.704 hybrid contribution -0.197 0.116 0.596 0.639 sum 13.321 -3.711 -10.177 17.169 Atomic orbital electron populations 1.21796 0.96006 1.01403 1.00119 1.20490 0.93032 0.93571 0.87113 0.95782 1.22043 0.94295 1.01272 0.98916 1.21673 0.97371 0.99708 0.96652 1.21998 0.77875 1.00753 0.98354 0.90162 1.46329 1.08871 1.26436 1.55048 1.19677 0.88207 0.82107 0.79060 1.90737 1.62368 1.42388 1.44379 1.23386 0.95084 0.96621 1.02690 1.21457 0.98617 0.82413 0.73753 1.92878 1.90700 1.58243 1.76024 1.93063 1.95643 1.95052 1.33393 1.22875 0.98516 0.99309 0.94081 1.22990 0.97159 1.01487 0.96595 1.22787 0.98026 0.95131 0.98125 1.21073 0.83420 0.96964 0.94349 1.44037 1.02666 1.64745 1.19264 1.19177 0.94685 1.38218 0.86143 0.91170 1.25087 0.97713 0.99537 0.97040 1.70013 1.23186 1.44311 1.16739 0.86268 0.79623 0.79645 0.81512 1.20256 1.21568 1.21814 0.92793 0.92036 0.94379 0.92712 0.92117 0.92283 0.93179 0.76710 0.86417 0.88417 0.90084 0.89768 0.90184 0.90149 0.87445 0.88681 0.96547 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.94 37.16 0.30 -2.32 16 2 C 0.16 3.49 3.50 -67.59 -0.24 3.25 16 3 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.21 5.37 -26.61 -0.14 -2.36 16 5 C -0.12 -1.98 5.35 -26.69 -0.14 -2.12 16 6 C 0.12 2.37 2.60 -67.81 -0.18 2.19 16 7 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 8 N -0.71 -12.63 4.79 -53.69 -0.26 -12.88 16 9 C 0.53 9.54 6.86 -10.99 -0.08 9.47 16 10 O -0.52 -11.87 15.57 5.55 0.09 -11.79 16 11 C -0.17 -2.21 0.91 -154.85 -0.14 -2.35 16 12 C 0.29 3.48 4.57 37.16 0.17 3.65 16 13 F -0.20 -2.58 14.57 2.25 0.03 -2.55 16 14 F -0.19 -3.02 17.06 2.25 0.04 -2.98 16 15 C -0.11 -0.98 7.21 -25.82 -0.19 -1.16 16 16 C -0.14 -1.09 7.74 -25.83 -0.20 -1.29 16 17 C -0.10 -1.17 6.92 -25.92 -0.18 -1.35 16 18 C 0.17 4.30 4.86 -3.71 -0.02 4.28 16 19 N -0.58 -15.05 2.99 -164.77 -0.49 -15.55 16 20 C -0.25 -7.11 8.61 -15.06 -0.13 -7.24 16 21 H 0.07 1.92 6.20 -52.48 -0.33 1.60 16 22 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 23 N -0.90 -27.56 11.14 55.49 0.62 -26.94 16 24 Si 0.90 22.97 29.58 -169.99 -5.03 17.94 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 28 H 0.05 1.06 7.40 -51.93 -0.38 0.67 16 29 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 6.03 6.20 -40.82 -0.25 5.77 16 36 H 0.12 0.86 7.34 -51.93 -0.38 0.48 16 37 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.08 0.47 7.64 -51.93 -0.40 0.07 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 42 H 0.11 1.41 7.45 -51.93 -0.39 1.03 16 43 H 0.10 2.86 6.06 -51.93 -0.31 2.54 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -34.19 355.53 -7.90 -42.09 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.00 Total: 4.57 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.25 Total: 2.72 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.13 Total: -55.37 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.07 Total: -5.53 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.03 Total: 17.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.19 -7.90 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.559 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds