Wall clock time and date at job start Tue Mar 31 2020 12:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.58681 * 2 1 4 4 C 1.53192 * 109.70354 * 239.64396 * 2 1 3 5 5 C 1.53104 * 109.32900 * 185.50692 * 4 2 1 6 6 C 1.53037 * 109.50473 * 61.34589 * 5 4 2 7 7 H 1.08993 * 109.50150 * 178.68417 * 6 5 4 8 8 N 1.46502 * 109.49908 * 58.61283 * 6 5 4 9 9 C 1.34772 * 120.00240 * 155.06450 * 8 6 5 10 10 O 1.21286 * 119.99789 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00474 * 180.02562 * 9 8 6 12 12 C 1.53003 * 112.84948 * 309.67058 * 11 9 8 13 13 F 1.39905 * 109.46732 * 48.80080 * 12 11 9 14 14 F 1.39897 * 109.46980 * 288.79954 * 12 11 9 15 15 C 1.53778 * 113.69066 * 80.93744 * 11 9 8 16 16 C 1.53780 * 87.08254 * 89.12949 * 15 11 9 17 17 C 1.53782 * 113.61843 * 178.47443 * 11 9 8 18 18 C 1.53198 * 109.33547 * 298.65212 * 6 5 4 19 19 N 1.46918 * 109.58386 * 120.28361 * 2 1 3 20 20 C 1.36933 * 120.63551 * 353.51707 * 19 2 1 21 21 H 1.08001 * 119.99772 * 29.02719 * 20 19 2 22 22 C 1.38812 * 120.00416 * 209.03234 * 20 19 2 23 23 N 1.31621 * 119.99903 * 15.01887 * 22 20 19 24 24 Si 1.86799 * 120.00032 * 195.03007 * 22 20 19 25 25 H 1.48499 * 109.47433 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47391 * 119.99617 * 24 22 20 27 27 H 1.48502 * 109.46805 * 239.99320 * 24 22 20 28 28 H 1.09000 * 109.47068 * 299.72016 * 1 2 3 29 29 H 1.09006 * 109.46946 * 59.71578 * 1 2 3 30 30 H 1.08997 * 109.47372 * 179.71174 * 1 2 3 31 31 H 1.08994 * 109.49896 * 305.46398 * 4 2 1 32 32 H 1.09007 * 109.49528 * 65.52406 * 4 2 1 33 33 H 1.09003 * 109.45178 * 301.34840 * 5 4 2 34 34 H 1.09008 * 109.50170 * 181.37061 * 5 4 2 35 35 H 0.97004 * 120.00215 * 335.07229 * 8 6 5 36 36 H 1.08992 * 109.47075 * 168.80113 * 12 11 9 37 37 H 1.09000 * 113.61603 * 203.67826 * 15 11 9 38 38 H 1.09000 * 113.61306 * 334.58114 * 15 11 9 39 39 H 1.09001 * 113.61101 * 270.88513 * 16 15 11 40 40 H 1.09002 * 113.69336 * 139.99600 * 16 15 11 41 41 H 1.09004 * 113.61368 * 25.34520 * 17 11 9 42 42 H 1.08998 * 113.61849 * 156.16823 * 17 11 9 43 43 H 1.09005 * 109.58575 * 174.44076 * 18 6 5 44 44 H 1.09001 * 109.58382 * 294.71412 * 18 6 5 45 45 H 0.97002 * 120.00006 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5713 -0.8446 -1.1677 6 6 3.9602 -1.6607 0.0670 7 1 5.0446 -1.7629 0.1089 8 7 3.3466 -2.9887 -0.0114 9 6 3.9033 -4.0280 0.6416 10 8 4.9121 -3.8637 1.2945 11 6 3.2724 -5.3941 0.5605 12 6 1.7743 -5.3761 0.8709 13 9 1.1566 -4.3634 0.1292 14 9 1.5838 -5.1368 2.2360 15 6 3.6262 -6.1629 -0.7235 16 6 4.8455 -6.7127 0.0355 17 6 4.0477 -6.4774 1.3289 18 6 3.4653 -0.9424 1.3264 19 7 2.0225 -0.6980 1.1953 20 6 1.1534 -1.1125 2.1689 21 1 0.1364 -1.3691 1.9114 22 6 1.5794 -1.2029 3.4870 23 7 2.7011 -0.6223 3.8573 24 14 0.5610 -2.1488 4.7350 25 1 -0.6461 -2.7030 4.0709 26 1 1.3717 -3.2594 5.2959 27 1 0.1475 -1.2355 5.8305 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5183 -0.8875 30 1 -0.3634 -1.0276 -0.0052 31 1 1.6080 -1.7256 -1.2906 32 1 1.7684 -0.1675 -2.1365 33 1 4.0078 0.1517 -1.0968 34 1 3.9441 -1.3413 -2.0636 35 1 2.5396 -3.1201 -0.5334 36 1 1.3369 -6.3387 0.6063 37 1 2.8965 -6.9275 -0.9897 38 1 3.8884 -5.5166 -1.5611 39 1 5.7327 -6.0853 -0.0506 40 1 5.0495 -7.7643 -0.1665 41 1 4.6501 -6.0849 2.1482 42 1 3.4329 -7.3273 1.6250 43 1 3.6524 -1.5665 2.2003 44 1 3.9905 0.0064 1.4360 45 1 2.9986 -0.6852 4.7785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:05 Heat of formation + Delta-G solvation = -95.147201 kcal Electronic energy + Delta-G solvation = -30087.092265 eV Core-core repulsion = 25969.535785 eV Total energy + Delta-G solvation = -4117.556480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.68598 -46.67389 -40.29172 -38.36290 -36.72104 -34.03299 -32.64479 -30.77122 -29.79098 -28.60109 -26.19670 -25.79209 -24.92750 -23.69498 -22.10324 -21.74734 -20.38198 -19.26074 -18.69718 -17.34922 -16.99438 -16.84165 -16.17469 -15.98117 -15.30150 -15.12790 -14.56681 -14.11940 -13.88077 -13.71644 -13.58948 -13.37743 -13.15387 -12.97265 -12.79185 -12.69737 -12.63032 -12.44792 -12.11853 -11.77188 -11.56725 -11.14871 -11.09199 -11.03479 -10.85205 -10.78651 -10.60905 -10.52202 -10.31295 -10.28171 -10.22150 -9.85762 -9.48368 -9.37657 -9.25128 -8.33739 -8.28795 -6.49599 -5.63598 -3.06748 2.98383 3.47622 3.56533 3.56730 3.57636 3.91308 4.14764 4.31446 4.40873 4.61958 4.65344 4.91499 4.98919 5.29045 5.38756 5.42041 5.44089 5.45570 5.52237 5.58582 5.59882 5.68444 5.75338 5.92772 6.07141 6.07781 6.17569 6.20642 6.27743 6.38587 6.42198 6.50356 6.58406 6.67901 6.75769 6.97082 7.12261 7.20414 7.46210 7.79151 7.95710 8.16724 8.60101 8.80601 9.34950 9.99618 10.54820 11.44506 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012106 B = 0.007638 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.274743 B = 3665.174761 C = 4638.744542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.116 3.884 7 H 0.074 0.926 8 N -0.691 5.691 9 C 0.539 3.461 10 O -0.536 6.536 11 C -0.167 4.167 12 C 0.283 3.717 13 F -0.194 7.194 14 F -0.190 7.190 15 C -0.115 4.115 16 C -0.134 4.134 17 C -0.109 4.109 18 C 0.162 3.838 19 N -0.580 5.580 20 C -0.241 4.241 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.893 3.107 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.294 1.294 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.400 0.600 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.024 0.976 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -10.765 -12.466 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.010 3.990 7 H 0.092 0.908 8 N -0.344 5.344 9 C 0.322 3.678 10 O -0.414 6.414 11 C -0.171 4.171 12 C 0.228 3.772 13 F -0.175 7.175 14 F -0.171 7.171 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.147 4.147 18 C 0.036 3.964 19 N -0.303 5.303 20 C -0.370 4.370 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.546 5.546 24 Si 0.724 3.276 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.221 1.221 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.239 0.761 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.042 0.958 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.191 -10.564 -11.823 15.900 hybrid contribution -1.042 -0.359 0.622 1.266 sum 0.149 -10.923 -11.201 15.646 Atomic orbital electron populations 1.21791 0.96142 1.01265 1.00071 1.20441 0.92889 0.93533 0.87202 0.95878 1.22084 0.95082 1.00806 0.99084 1.21693 0.97092 1.00091 0.96692 1.21814 0.96822 0.81915 0.98426 0.90838 1.46065 1.29685 1.08223 1.50471 1.19181 0.84498 0.84376 0.79721 1.90669 1.25485 1.84437 1.40780 1.23354 0.94364 0.96968 1.02462 1.21768 0.91327 0.89716 0.74346 1.92900 1.84176 1.63868 1.76530 1.93071 1.95905 1.95616 1.32513 1.22903 0.98932 0.98782 0.94695 1.22800 0.97357 1.01488 0.95503 1.22748 0.97937 0.95571 0.98442 1.21171 0.83815 0.96995 0.94460 1.44005 1.02579 1.64776 1.18962 1.19076 0.94584 1.37326 0.86039 0.91556 1.24995 0.97670 0.99621 0.96929 1.69992 1.23372 1.44688 1.16581 0.86354 0.79847 0.79737 0.81697 1.20335 1.21526 1.22096 0.92069 0.94535 0.92888 0.92589 0.92949 0.91118 0.93170 0.76063 0.87176 0.88743 0.90293 0.89306 0.90737 0.88928 0.89186 0.88452 0.95820 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.95 37.16 0.30 -2.26 16 2 C 0.17 3.40 3.49 -67.60 -0.24 3.16 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.20 5.21 -26.58 -0.14 -2.34 16 5 C -0.12 -1.93 5.59 -26.66 -0.15 -2.08 16 6 C 0.12 2.30 2.81 -67.81 -0.19 2.11 16 7 H 0.07 1.48 7.58 -51.93 -0.39 1.09 16 8 N -0.69 -13.00 4.60 -53.69 -0.25 -13.25 16 9 C 0.54 10.32 6.60 -10.99 -0.07 10.25 16 10 O -0.54 -12.12 15.49 5.55 0.09 -12.03 16 11 C -0.17 -2.43 0.93 -154.85 -0.14 -2.58 16 12 C 0.28 4.21 4.70 37.16 0.17 4.38 16 13 F -0.19 -3.24 14.51 2.25 0.03 -3.20 16 14 F -0.19 -3.73 17.19 2.25 0.04 -3.69 16 15 C -0.12 -1.18 7.22 -25.92 -0.19 -1.37 16 16 C -0.13 -1.43 7.75 -25.92 -0.20 -1.63 16 17 C -0.11 -1.41 6.89 -25.92 -0.18 -1.59 16 18 C 0.16 4.00 4.89 -3.71 -0.02 3.99 16 19 N -0.58 -14.25 2.91 -164.77 -0.48 -14.73 16 20 C -0.24 -6.59 8.60 -15.06 -0.13 -6.71 16 21 H 0.07 1.81 6.21 -52.49 -0.33 1.48 16 22 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 23 N -0.90 -27.31 11.14 55.49 0.62 -26.70 16 24 Si 0.89 23.22 29.58 -169.99 -5.03 18.20 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 28 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 31 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.40 7.06 4.35 -40.82 -0.18 6.89 16 36 H 0.11 1.09 7.94 -51.93 -0.41 0.68 16 37 H 0.09 0.70 7.96 -51.93 -0.41 0.28 16 38 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.45 7.41 -51.93 -0.38 1.07 16 42 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.10 2.85 6.06 -51.93 -0.31 2.53 16 44 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -33.23 352.94 -7.82 -41.05 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.90 Total: 5.62 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.26 Total: 3.42 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.11 Total: -54.67 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.07 Total: -6.89 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.03 Total: 18.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.23 -7.82 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.099 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds