Wall clock time and date at job start Tue Mar 31 2020 12:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.58851 * 2 1 4 4 C 1.53192 * 109.58942 * 120.43149 * 2 1 3 5 5 C 1.53043 * 109.31132 * 174.42318 * 4 2 1 6 6 C 1.53039 * 109.53657 * 298.63064 * 5 4 2 7 7 H 1.09002 * 109.49920 * 301.38610 * 6 5 4 8 8 N 1.46503 * 109.49869 * 181.32313 * 6 5 4 9 9 C 1.34774 * 120.00333 * 155.00403 * 8 6 5 10 10 O 1.21280 * 119.99603 * 359.97438 * 9 8 6 11 11 C 1.50697 * 120.00150 * 179.97438 * 9 8 6 12 12 C 1.53005 * 112.85052 * 48.79895 * 11 9 8 13 13 F 1.39901 * 109.46877 * 69.66842 * 12 11 9 14 14 F 1.39892 * 109.47154 * 189.66905 * 12 11 9 15 15 C 1.53782 * 113.61247 * 277.49709 * 11 9 8 16 16 C 1.53785 * 87.07981 * 220.01705 * 15 11 9 17 17 C 1.53779 * 113.61548 * 179.97438 * 11 9 8 18 18 C 1.53186 * 109.31431 * 61.36991 * 6 5 4 19 19 N 1.46931 * 108.77590 * 305.36204 * 18 6 5 20 20 C 1.36930 * 120.63603 * 233.88385 * 19 18 6 21 21 H 1.07998 * 120.00651 * 149.90675 * 20 19 18 22 22 C 1.38815 * 119.99725 * 329.90537 * 20 19 18 23 23 N 1.31621 * 119.99984 * 344.60333 * 22 20 19 24 24 Si 1.86800 * 120.00122 * 164.60012 * 22 20 19 25 25 H 1.48504 * 109.46788 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47041 * 119.99977 * 24 22 20 27 27 H 1.48497 * 109.47258 * 240.00106 * 24 22 20 28 28 H 1.08996 * 109.47564 * 180.28083 * 1 2 3 29 29 H 1.09001 * 109.47052 * 300.28355 * 1 2 3 30 30 H 1.09005 * 109.47456 * 60.27518 * 1 2 3 31 31 H 1.09006 * 109.49174 * 294.36966 * 4 2 1 32 32 H 1.08996 * 109.49797 * 54.47039 * 4 2 1 33 33 H 1.08998 * 109.46012 * 58.65473 * 5 4 2 34 34 H 1.09004 * 109.45603 * 178.62707 * 5 4 2 35 35 H 0.97005 * 119.99595 * 334.99978 * 8 6 5 36 36 H 1.09000 * 109.47028 * 309.66913 * 12 11 9 37 37 H 1.08999 * 113.61493 * 334.56134 * 15 11 9 38 38 H 1.08997 * 113.61905 * 105.47285 * 15 11 9 39 39 H 1.08994 * 113.61427 * 270.88614 * 16 15 11 40 40 H 1.08998 * 113.61360 * 139.97424 * 16 15 11 41 41 H 1.08992 * 113.61462 * 254.52838 * 17 11 9 42 42 H 1.08995 * 113.61272 * 25.43374 * 17 11 9 43 43 H 1.09001 * 109.58891 * 185.57711 * 18 6 5 44 44 H 1.08994 * 109.58912 * 65.15075 * 18 6 5 45 45 H 0.97002 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8494 1.1689 6 6 3.9569 -1.6656 -0.0658 7 1 3.4987 -2.6530 -0.0085 8 7 5.4142 -1.8052 -0.1200 9 6 5.9676 -2.8472 -0.7716 10 8 5.2591 -3.6694 -1.3126 11 6 7.4667 -2.9904 -0.8279 12 6 8.1299 -2.8392 0.5427 13 9 7.8116 -3.9443 1.3392 14 9 9.5176 -2.7633 0.3833 15 6 8.1254 -2.1439 -1.9298 16 6 9.0530 -3.3432 -2.1873 17 6 7.9383 -4.2298 -1.6065 18 6 3.4650 -0.9453 -1.3250 19 7 2.0224 -0.6980 -1.1955 20 6 1.1529 -1.1152 -2.1675 21 1 0.1405 -1.3859 -1.9065 22 6 1.5728 -1.1903 -3.4885 23 7 2.6816 -0.5873 -3.8619 24 14 0.5642 -2.1470 -4.7362 25 1 -0.6288 -2.7267 -4.0684 26 1 0.1278 -1.2350 -5.8239 27 1 1.3914 -3.2394 -5.3084 28 1 -0.3634 -1.0276 0.0050 29 1 -0.3633 0.5182 0.8874 30 1 -0.3634 0.5096 -0.8925 31 1 1.7660 -0.1695 2.1366 32 1 1.6030 -1.7270 1.2890 33 1 4.0061 0.1460 1.0994 34 1 3.9378 -1.3477 2.0649 35 1 5.9808 -1.1477 0.3130 36 1 7.7690 -1.9294 1.0225 37 1 7.4607 -1.9192 -2.7639 38 1 8.6450 -1.2633 -1.5522 39 1 9.9601 -3.3311 -1.5832 40 1 9.2492 -3.5244 -3.2440 41 1 8.3067 -5.0326 -0.9679 42 1 7.2223 -4.5755 -2.3522 43 1 3.6517 -1.5689 -2.1993 44 1 3.9902 0.0038 -1.4318 45 1 2.9748 -0.6394 -4.7851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:09 Heat of formation + Delta-G solvation = -100.829947 kcal Electronic energy + Delta-G solvation = -28483.616540 eV Core-core repulsion = 24365.813638 eV Total energy + Delta-G solvation = -4117.802902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.23956 -47.18404 -40.30486 -38.28382 -37.04015 -34.50165 -32.84362 -31.00683 -29.91154 -28.73492 -26.05658 -25.82573 -25.06544 -24.15307 -22.30732 -21.27197 -20.32338 -19.53440 -19.22134 -18.07914 -17.43501 -17.06573 -16.43855 -15.92148 -15.64566 -15.14264 -14.69928 -14.33136 -14.11206 -13.91332 -13.81105 -13.67504 -13.49437 -13.38473 -12.98153 -12.80998 -12.50590 -12.45857 -12.13969 -11.93092 -11.91235 -11.46038 -11.22420 -11.13531 -10.90918 -10.73350 -10.59286 -10.54440 -10.41377 -10.38480 -10.26826 -9.97668 -9.79436 -9.48540 -9.35539 -8.62458 -8.43993 -6.62036 -5.76098 -3.20649 2.74425 3.29794 3.41441 3.47347 3.49238 3.50173 3.86531 4.10191 4.20703 4.52148 4.61050 4.70200 4.79026 4.97982 5.26112 5.32047 5.34555 5.48249 5.54903 5.57193 5.64663 5.67361 5.80564 5.86196 5.93096 5.94364 6.07000 6.24179 6.27512 6.28740 6.37191 6.43220 6.46205 6.60346 6.70565 6.85940 7.02778 7.11052 7.27885 7.69313 7.77931 7.86340 8.46804 8.51106 9.23116 9.87213 10.42730 11.32231 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.004520 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.914468 B = 6193.691075 C = 7479.344316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.115 3.885 7 H 0.083 0.917 8 N -0.719 5.719 9 C 0.532 3.468 10 O -0.515 6.515 11 C -0.174 4.174 12 C 0.293 3.707 13 F -0.196 7.196 14 F -0.196 7.196 15 C -0.108 4.108 16 C -0.147 4.147 17 C -0.106 4.106 18 C 0.170 3.830 19 N -0.583 5.583 20 C -0.252 4.252 21 H 0.070 0.930 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.289 1.289 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.389 0.611 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.017 0.983 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.923 -0.691 9.781 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.010 3.990 7 H 0.101 0.899 8 N -0.369 5.369 9 C 0.316 3.684 10 O -0.389 6.389 11 C -0.178 4.178 12 C 0.239 3.761 13 F -0.177 7.177 14 F -0.177 7.177 15 C -0.145 4.145 16 C -0.185 4.185 17 C -0.143 4.143 18 C 0.043 3.957 19 N -0.307 5.307 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.215 1.215 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.222 0.778 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.035 0.965 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.442 -1.309 9.225 14.756 hybrid contribution -0.059 -0.150 -0.365 0.399 sum 11.383 -1.459 8.860 14.498 Atomic orbital electron populations 1.21800 0.95968 1.01395 1.00231 1.20495 0.93114 0.93548 0.87005 0.95713 1.22048 0.94208 1.01371 0.98961 1.21685 0.97543 0.99597 0.96654 1.22058 0.77406 1.01054 0.98441 0.89892 1.46133 1.08852 1.26563 1.55344 1.19591 0.88029 0.81751 0.79069 1.90755 1.62180 1.41913 1.44087 1.23350 0.94422 1.04570 0.95447 1.21317 0.76700 0.88440 0.89661 1.93014 1.92463 1.57026 1.75208 1.92948 1.31937 1.96763 1.96034 1.22826 0.98013 0.97113 0.96578 1.23081 0.97693 0.95504 1.02196 1.22803 0.97979 0.94326 0.99219 1.21053 0.83679 0.96792 0.94224 1.44018 1.02558 1.64756 1.19332 1.19174 0.95186 1.37835 0.85987 0.91208 1.25084 0.97822 0.99268 0.97048 1.70011 1.24251 1.43663 1.16483 0.86272 0.79664 0.79687 0.81449 1.20199 1.21785 1.21521 0.92808 0.94346 0.91967 0.92633 0.92039 0.92251 0.93052 0.77822 0.86987 0.87999 0.90101 0.88824 0.90593 0.90663 0.87599 0.88920 0.96476 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.15 0.30 -2.23 16 2 C 0.16 3.31 3.50 -67.60 -0.24 3.08 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.09 5.37 -26.61 -0.14 -2.24 16 5 C -0.12 -1.81 5.35 -26.69 -0.14 -1.96 16 6 C 0.12 2.17 2.61 -67.81 -0.18 1.99 16 7 H 0.08 1.81 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -11.08 4.97 -53.69 -0.27 -11.35 16 9 C 0.53 8.94 6.88 -10.99 -0.08 8.87 16 10 O -0.52 -11.18 15.56 5.56 0.09 -11.10 16 11 C -0.17 -2.21 1.02 -154.85 -0.16 -2.37 16 12 C 0.29 3.15 4.68 37.16 0.17 3.32 16 13 F -0.20 -2.54 17.06 2.25 0.04 -2.50 16 14 F -0.20 -2.07 14.55 2.25 0.03 -2.04 16 15 C -0.11 -1.21 6.96 -25.92 -0.18 -1.39 16 16 C -0.15 -1.53 7.57 -25.90 -0.20 -1.73 16 17 C -0.11 -1.34 6.90 -25.90 -0.18 -1.52 16 18 C 0.17 3.99 4.87 -3.71 -0.02 3.97 16 19 N -0.58 -14.27 2.98 -164.77 -0.49 -14.76 16 20 C -0.25 -6.83 8.56 -15.06 -0.13 -6.96 16 21 H 0.07 1.85 6.24 -52.49 -0.33 1.53 16 22 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 23 N -0.90 -26.23 11.24 55.49 0.62 -25.61 16 24 Si 0.90 22.24 29.58 -169.99 -5.03 17.21 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.25 7.64 -51.93 -0.40 0.85 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 4.52 7.51 -40.82 -0.31 4.22 16 36 H 0.11 0.88 7.04 -51.93 -0.37 0.51 16 37 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 38 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 39 H 0.09 0.90 6.44 -51.93 -0.33 0.57 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 42 H 0.11 1.54 7.43 -51.93 -0.39 1.16 16 43 H 0.09 2.59 6.15 -51.93 -0.32 2.27 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -31.94 355.40 -7.88 -39.82 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.98 Total: 4.03 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.25 Total: 0.93 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.13 Total: -51.71 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.94 -7.88 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.005 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds