Wall clock time and date at job start Tue Mar 31 2020 12:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.58282 * 2 1 4 4 C 1.53193 * 109.58920 * 120.42226 * 2 1 3 5 5 C 1.53099 * 109.32987 * 174.42264 * 4 2 1 6 6 C 1.53037 * 109.50743 * 298.65931 * 5 4 2 7 7 H 1.08998 * 109.50180 * 181.31578 * 6 5 4 8 8 N 1.46506 * 109.49614 * 301.38056 * 6 5 4 9 9 C 1.34771 * 119.99749 * 204.93164 * 8 6 5 10 10 O 1.21280 * 120.00604 * 0.02562 * 9 8 6 11 11 C 1.50704 * 119.99999 * 180.02562 * 9 8 6 12 12 C 1.53001 * 112.84619 * 311.19985 * 11 9 8 13 13 F 1.39906 * 109.47029 * 168.80389 * 12 11 9 14 14 F 1.39905 * 109.47181 * 288.80077 * 12 11 9 15 15 C 1.53770 * 113.61591 * 180.02562 * 11 9 8 16 16 C 1.53781 * 87.08171 * 220.01782 * 15 11 9 17 17 C 1.53774 * 87.08106 * 25.43443 * 16 15 11 18 18 C 1.53188 * 109.33858 * 61.34547 * 6 5 4 19 19 N 1.46921 * 109.58779 * 239.71560 * 2 1 3 20 20 C 1.36936 * 120.62953 * 6.62438 * 19 2 1 21 21 H 1.08001 * 120.00064 * 330.14454 * 20 19 2 22 22 C 1.38818 * 120.00075 * 150.14957 * 20 19 2 23 23 N 1.31618 * 119.99847 * 344.50066 * 22 20 19 24 24 Si 1.86795 * 120.00188 * 164.50663 * 22 20 19 25 25 H 1.48510 * 109.47127 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47410 * 119.99802 * 24 22 20 27 27 H 1.48497 * 109.47084 * 240.00102 * 24 22 20 28 28 H 1.09004 * 109.47079 * 180.28751 * 1 2 3 29 29 H 1.09004 * 109.46998 * 300.28189 * 1 2 3 30 30 H 1.09000 * 109.47331 * 60.28717 * 1 2 3 31 31 H 1.08995 * 109.49828 * 294.37709 * 4 2 1 32 32 H 1.08999 * 109.49510 * 54.43704 * 4 2 1 33 33 H 1.09001 * 109.50355 * 178.63434 * 5 4 2 34 34 H 1.09000 * 109.45028 * 58.65505 * 5 4 2 35 35 H 0.96996 * 119.99785 * 24.93843 * 8 6 5 36 36 H 1.08998 * 109.47338 * 48.80037 * 12 11 9 37 37 H 1.08999 * 113.61746 * 105.46965 * 15 11 9 38 38 H 1.08998 * 113.69325 * 334.57306 * 15 11 9 39 39 H 1.09000 * 113.61641 * 139.98242 * 16 15 11 40 40 H 1.09004 * 113.61835 * 270.88382 * 16 15 11 41 41 H 1.08997 * 113.62204 * 89.11410 * 17 16 15 42 42 H 1.09005 * 113.61752 * 220.02400 * 17 16 15 43 43 H 1.09009 * 109.58167 * 65.14060 * 18 6 5 44 44 H 1.09002 * 109.59233 * 185.41913 * 18 6 5 45 45 H 0.97000 * 119.99821 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7308 1.2445 5 6 3.5682 -0.8496 1.1695 6 6 3.9570 -1.6655 -0.0655 7 1 5.0412 -1.7698 -0.1061 8 7 3.3407 -2.9924 0.0112 9 6 3.8961 -4.0321 -0.6420 10 8 4.9064 -3.8695 -1.2930 11 6 3.2619 -5.3969 -0.5636 12 6 2.9311 -5.8168 0.8700 13 9 2.1253 -6.9603 0.8468 14 9 4.1161 -6.0953 1.5596 15 6 4.0159 -6.4734 -1.3619 16 6 2.6391 -7.0131 -1.7837 17 6 2.0980 -5.5929 -1.5495 18 6 3.4650 -0.9453 -1.3249 19 7 2.0226 -0.6980 -1.1953 20 6 1.1538 -1.1100 -2.1703 21 1 0.1398 -1.3775 -1.9121 22 6 1.5764 -1.1839 -3.4905 23 7 2.6872 -0.5826 -3.8605 24 14 0.5685 -2.1365 -4.7419 25 1 -0.6267 -2.7157 -4.0774 26 1 0.1364 -1.2219 -5.8290 27 1 1.3947 -3.2298 -5.3139 28 1 -0.3633 -1.0277 0.0052 29 1 -0.3633 0.5182 0.8875 30 1 -0.3634 0.5094 -0.8925 31 1 1.7661 -0.1694 2.1366 32 1 1.6026 -1.7266 1.2896 33 1 3.9390 -1.3477 2.0653 34 1 4.0068 0.1459 1.0999 35 1 2.5328 -3.1225 0.5320 36 1 2.4000 -5.0081 1.3720 37 1 4.5827 -7.1636 -0.7371 38 1 4.6010 -6.0747 -2.1906 39 1 2.5950 -7.3308 -2.8255 40 1 2.2314 -7.7546 -1.0965 41 1 2.1583 -4.9520 -2.4291 42 1 1.1164 -5.5721 -1.0758 43 1 3.9903 0.0039 -1.4316 44 1 3.6541 -1.5679 -2.1994 45 1 2.9822 -0.6339 -4.7831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132240403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:13 Heat of formation + Delta-G solvation = -99.111953 kcal Electronic energy + Delta-G solvation = -29434.465715 eV Core-core repulsion = 25316.737311 eV Total energy + Delta-G solvation = -4117.728405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.12356 -47.06920 -40.19512 -38.36513 -36.86687 -34.20048 -32.78518 -31.01092 -29.95595 -28.55942 -26.21807 -25.66784 -25.03826 -24.17813 -22.22289 -21.34363 -20.45731 -19.29067 -18.82088 -18.13175 -17.32037 -16.98845 -16.31824 -15.85400 -15.40733 -15.02677 -14.59194 -14.36144 -14.09132 -13.92241 -13.77379 -13.61468 -13.38431 -13.24910 -12.97594 -12.79236 -12.54109 -12.32208 -12.02153 -11.91729 -11.76394 -11.29215 -11.20338 -11.12612 -10.98316 -10.87940 -10.76654 -10.42516 -10.41637 -10.35965 -10.24034 -10.00072 -9.59706 -9.50200 -9.29054 -8.49022 -8.45438 -6.62908 -5.78512 -3.23045 2.91588 3.33479 3.40974 3.43523 3.51337 3.61446 4.00663 4.24872 4.38562 4.46221 4.77333 4.85313 4.95232 5.13457 5.26505 5.31146 5.36391 5.45988 5.51106 5.55282 5.75392 5.84459 5.96337 5.97460 6.03759 6.06080 6.08162 6.11488 6.28507 6.30884 6.40034 6.43973 6.47408 6.55458 6.63592 6.83793 7.01012 7.07556 7.33381 7.64430 7.80586 7.97822 8.45637 8.65980 9.20068 9.84466 10.41350 11.29469 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.006511 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.050178 B = 4299.559151 C = 5394.142804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.076 0.924 8 N -0.698 5.698 9 C 0.536 3.464 10 O -0.531 6.531 11 C -0.171 4.171 12 C 0.293 3.707 13 F -0.196 7.196 14 F -0.198 7.198 15 C -0.104 4.104 16 C -0.149 4.149 17 C -0.105 4.105 18 C 0.163 3.837 19 N -0.582 5.582 20 C -0.250 4.250 21 H 0.068 0.932 22 C 0.007 3.993 23 N -0.897 5.897 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.289 1.289 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.392 0.608 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.025 0.975 44 H 0.095 0.905 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 -8.044 10.748 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.094 0.906 8 N -0.348 5.348 9 C 0.320 3.680 10 O -0.407 6.407 11 C -0.175 4.175 12 C 0.239 3.761 13 F -0.177 7.177 14 F -0.179 7.179 15 C -0.142 4.142 16 C -0.186 4.186 17 C -0.143 4.143 18 C 0.037 3.963 19 N -0.305 5.305 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.192 4.192 23 N -0.541 5.541 24 Si 0.722 3.278 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.216 1.216 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.226 0.774 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.113 0.887 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.345 -7.911 10.125 12.854 hybrid contribution -0.835 -0.473 -0.425 1.049 sum -1.180 -8.384 9.701 12.876 Atomic orbital electron populations 1.21793 0.96096 1.01159 1.00222 1.20465 0.92896 0.93669 0.87176 0.95746 1.22072 0.95110 1.00549 0.99193 1.21707 0.97006 1.00252 0.96760 1.21824 0.96987 0.81628 0.98366 0.90568 1.45881 1.29199 1.08884 1.50814 1.19493 0.84156 0.84643 0.79687 1.90684 1.24711 1.84564 1.40776 1.23292 1.02859 0.96509 0.94844 1.21326 0.77892 0.85363 0.91545 1.92948 1.73428 1.54292 1.97031 1.92999 1.49243 1.94785 1.80851 1.22770 0.96740 0.94861 0.99833 1.23084 0.96203 0.96813 1.02520 1.22805 0.95505 0.97615 0.98334 1.21148 0.83822 0.97025 0.94341 1.44040 1.02653 1.64895 1.18954 1.19099 0.94994 1.37944 0.85948 0.91427 1.25069 0.97711 0.99476 0.96973 1.69997 1.23911 1.43547 1.16642 0.86398 0.79672 0.79860 0.81919 1.20224 1.21791 1.21563 0.93009 0.94451 0.92022 0.92799 0.92873 0.92988 0.91002 0.77367 0.87107 0.90813 0.87740 0.90748 0.88935 0.87909 0.90083 0.95683 0.88689 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.95 37.16 0.30 -2.04 16 2 C 0.16 3.09 3.50 -67.60 -0.24 2.86 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.95 5.20 -26.58 -0.14 -2.09 16 5 C -0.12 -1.79 5.59 -26.66 -0.15 -1.94 16 6 C 0.12 2.15 2.81 -67.81 -0.19 1.96 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.70 -11.75 4.80 -53.69 -0.26 -12.00 16 9 C 0.54 9.67 6.89 -10.99 -0.08 9.59 16 10 O -0.53 -11.61 15.56 5.56 0.09 -11.52 16 11 C -0.17 -2.49 1.03 -154.85 -0.16 -2.65 16 12 C 0.29 3.63 4.71 37.16 0.18 3.81 16 13 F -0.20 -2.40 14.54 2.25 0.03 -2.36 16 14 F -0.20 -2.74 17.01 2.25 0.04 -2.70 16 15 C -0.10 -1.48 6.90 -25.92 -0.18 -1.65 16 16 C -0.15 -1.86 7.57 -25.92 -0.20 -2.05 16 17 C -0.10 -1.49 6.95 -25.92 -0.18 -1.67 16 18 C 0.16 3.74 4.88 -3.71 -0.02 3.72 16 19 N -0.58 -13.18 2.90 -164.78 -0.48 -13.66 16 20 C -0.25 -6.29 8.57 -15.06 -0.13 -6.42 16 21 H 0.07 1.67 6.24 -52.49 -0.33 1.34 16 22 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 23 N -0.90 -25.63 11.23 55.49 0.62 -25.00 16 24 Si 0.89 21.15 29.58 -169.99 -5.03 16.12 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H 0.05 0.89 7.44 -51.93 -0.39 0.50 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.18 7.63 -51.93 -0.40 0.79 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.77 6.40 -51.93 -0.33 0.43 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.39 5.76 5.66 -40.82 -0.23 5.53 16 36 H 0.11 1.11 7.00 -51.93 -0.36 0.75 16 37 H 0.07 0.97 7.88 -51.93 -0.41 0.57 16 38 H 0.10 1.65 7.44 -51.93 -0.39 1.26 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.06 6.46 -51.93 -0.34 0.73 16 41 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 42 H 0.08 1.03 8.02 -51.93 -0.42 0.62 16 43 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 44 H 0.09 2.58 6.15 -51.93 -0.32 2.26 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -29.76 351.73 -7.76 -37.52 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.81 Total: 6.79 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.27 Total: 1.52 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.11 Total: -50.66 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.07 Total: -5.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.76 -7.76 -37.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132240403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.587 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds