Wall clock time and date at job start Tue Mar 31 2020 12:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.58344 * 2 1 4 4 C 1.53186 * 109.58722 * 239.57743 * 2 1 3 5 5 C 1.53046 * 109.31208 * 185.57700 * 4 2 1 6 6 C 1.53037 * 109.53816 * 61.36579 * 5 4 2 7 7 H 1.08996 * 109.49622 * 58.58343 * 6 5 4 8 8 N 1.46493 * 109.52691 * 178.66872 * 6 5 4 9 9 C 1.34776 * 120.00377 * 204.85562 * 8 6 5 10 10 O 1.21281 * 119.99470 * 4.78290 * 9 8 6 11 11 C 1.50702 * 120.00286 * 184.78741 * 9 8 6 12 12 C 1.52998 * 115.54619 * 279.28184 * 11 9 8 13 13 C 1.53004 * 109.47469 * 303.28093 * 12 11 9 14 14 F 1.39904 * 109.47321 * 63.28343 * 12 11 9 15 15 F 1.39900 * 109.46990 * 183.28114 * 12 11 9 16 16 C 1.52997 * 117.50061 * 133.57645 * 11 9 8 17 17 C 1.52995 * 117.50145 * 64.95125 * 11 9 8 18 18 C 1.53198 * 109.31207 * 298.63610 * 6 5 4 19 19 N 1.46922 * 109.58636 * 120.28467 * 2 1 3 20 20 C 1.36937 * 120.63048 * 353.38106 * 19 2 1 21 21 H 1.07994 * 120.00257 * 32.60010 * 20 19 2 22 22 C 1.38811 * 119.99970 * 212.60818 * 20 19 2 23 23 N 1.31626 * 119.99704 * 10.79813 * 22 20 19 24 24 Si 1.86800 * 120.00254 * 190.80521 * 22 20 19 25 25 H 1.48500 * 109.46988 * 59.99492 * 24 22 20 26 26 H 1.48494 * 109.47323 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46790 * 299.99860 * 24 22 20 28 28 H 1.08990 * 109.47000 * 299.71751 * 1 2 3 29 29 H 1.09001 * 109.46766 * 59.71654 * 1 2 3 30 30 H 1.08992 * 109.46899 * 179.70791 * 1 2 3 31 31 H 1.08999 * 109.50210 * 305.52994 * 4 2 1 32 32 H 1.09002 * 109.50036 * 65.62783 * 4 2 1 33 33 H 1.09001 * 109.45898 * 301.34501 * 5 4 2 34 34 H 1.08999 * 109.45713 * 181.38538 * 5 4 2 35 35 H 0.97007 * 119.99842 * 24.84881 * 8 6 5 36 36 H 1.09007 * 109.46672 * 65.20039 * 13 12 11 37 37 H 1.08998 * 109.47205 * 185.19946 * 13 12 11 38 38 H 1.08997 * 109.46754 * 305.20217 * 13 12 11 39 39 H 1.08999 * 117.49619 * 359.97438 * 16 11 9 40 40 H 1.08996 * 117.50181 * 145.01855 * 16 11 9 41 41 H 1.09002 * 117.49992 * 214.98609 * 17 11 9 42 42 H 1.09003 * 117.49692 * 359.97438 * 17 11 9 43 43 H 1.08998 * 109.58155 * 294.84659 * 18 6 5 44 44 H 1.08999 * 109.58783 * 174.42419 * 18 6 5 45 45 H 0.97003 * 119.99394 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2445 5 6 3.5676 -0.8493 -1.1691 6 6 3.9570 -1.6656 0.0655 7 1 3.4984 -2.6527 0.0084 8 7 5.4142 -1.8058 0.1201 9 6 5.9671 -2.8464 0.7742 10 8 5.2597 -3.7128 1.2430 11 6 7.4642 -2.9334 0.9232 12 6 8.2179 -3.4750 -0.2931 13 6 7.6759 -4.8596 -0.6541 14 9 8.0399 -2.6076 -1.3763 15 9 9.5807 -3.5716 0.0078 16 6 8.0177 -3.2757 2.3078 17 6 8.1549 -1.8541 1.7592 18 6 3.4651 -0.9453 1.3249 19 7 2.0226 -0.6981 1.1953 20 6 1.1537 -1.1101 2.1702 21 1 0.1534 -1.4200 1.9063 22 6 1.5587 -1.1294 3.4978 23 7 2.6911 -0.5575 3.8488 24 14 0.4967 -1.9670 4.7863 25 1 0.3366 -3.4019 4.4391 26 1 1.1468 -1.8494 6.1162 27 1 -0.8373 -1.3159 4.8275 28 1 -0.3633 0.5094 0.8924 29 1 -0.3633 0.5182 -0.8875 30 1 -0.3633 -1.0276 -0.0052 31 1 1.6031 -1.7268 -1.2893 32 1 1.7661 -0.1693 -2.1366 33 1 4.0062 0.1462 -1.0994 34 1 3.9379 -1.3472 -2.0652 35 1 5.9812 -1.1496 -0.3146 36 1 6.6387 -4.7707 -0.9775 37 1 8.2730 -5.2845 -1.4610 38 1 7.7299 -5.5097 0.2191 39 1 7.2990 -3.4376 3.1111 40 1 8.9190 -3.8870 2.3525 41 1 9.1464 -1.5301 1.4428 42 1 7.5264 -1.0808 2.2011 43 1 3.9903 0.0038 1.4317 44 1 3.6518 -1.5690 2.1991 45 1 2.9742 -0.5713 4.7765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132305708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:47 Heat of formation + Delta-G solvation = -96.899986 kcal Electronic energy + Delta-G solvation = -28476.675168 eV Core-core repulsion = 24359.042681 eV Total energy + Delta-G solvation = -4117.632487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.15258 -47.14425 -39.91855 -37.92123 -36.40737 -34.41291 -32.81018 -31.44860 -30.65874 -29.85327 -26.32994 -25.26570 -24.59317 -22.80793 -22.53023 -22.13831 -20.45088 -19.75676 -19.17091 -17.87689 -17.47294 -16.45461 -16.42059 -15.90812 -15.63816 -15.07479 -14.55747 -14.11830 -13.97812 -13.79915 -13.70463 -13.65257 -13.43110 -13.34941 -13.09330 -12.77501 -12.60623 -12.41319 -12.35808 -11.90656 -11.80832 -11.62887 -11.45453 -11.11204 -10.89161 -10.76113 -10.69243 -10.56620 -10.46972 -10.39846 -10.27561 -9.97032 -9.78758 -9.46997 -9.42021 -8.57202 -8.42553 -6.57041 -5.75295 -3.24057 2.69122 3.13677 3.38911 3.42056 3.46441 3.48204 3.64538 3.96625 4.22175 4.42985 4.51232 4.69163 4.79325 4.92219 5.29208 5.35063 5.36834 5.43766 5.49053 5.50575 5.56412 5.59035 5.69090 5.75760 5.77945 5.97051 5.99481 6.12080 6.27539 6.30523 6.39926 6.45643 6.49912 6.63364 6.74010 6.91290 7.05518 7.13479 7.30502 7.71173 7.83279 7.88147 8.50138 8.54489 9.24401 9.86919 10.44183 11.32657 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.004465 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.392241 B = 6268.890049 C = 7441.382500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.083 0.917 8 N -0.709 5.709 9 C 0.555 3.445 10 O -0.520 6.520 11 C -0.221 4.221 12 C 0.335 3.665 13 C -0.189 4.189 14 F -0.195 7.195 15 F -0.195 7.195 16 C -0.124 4.124 17 C -0.147 4.147 18 C 0.171 3.829 19 N -0.583 5.583 20 C -0.253 4.253 21 H 0.068 0.932 22 C 0.008 3.992 23 N -0.902 5.902 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.017 0.983 44 H 0.091 0.909 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.265 -3.060 -9.590 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.101 0.899 8 N -0.358 5.358 9 C 0.338 3.662 10 O -0.396 6.396 11 C -0.225 4.225 12 C 0.299 3.701 13 C -0.246 4.246 14 F -0.176 7.176 15 F -0.176 7.176 16 C -0.161 4.161 17 C -0.184 4.184 18 C 0.044 3.956 19 N -0.306 5.306 20 C -0.382 4.382 21 H 0.085 0.915 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.732 3.268 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.209 1.209 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.229 0.771 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.036 0.964 44 H 0.109 0.891 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.799 -3.637 -9.076 14.568 hybrid contribution 0.023 0.057 0.382 0.387 sum 10.822 -3.580 -8.694 14.336 Atomic orbital electron populations 1.21792 0.95979 1.01342 1.00213 1.20505 0.93087 0.93570 0.87026 0.95714 1.22045 0.94255 1.01302 0.98942 1.21674 0.97392 0.99698 0.96680 1.22082 0.77416 1.01023 0.98537 0.89912 1.46046 1.08717 1.26669 1.54385 1.18768 0.86485 0.82200 0.78786 1.90752 1.62183 1.39121 1.47497 1.22438 0.94815 1.10761 0.94505 1.20035 0.77146 0.90401 0.82526 1.22713 1.03786 0.93489 1.04654 1.93024 1.95139 1.72484 1.56924 1.92993 1.34346 1.96784 1.93500 1.23051 1.02511 0.98151 0.92413 1.23184 1.01904 0.92923 1.00392 1.21056 0.83766 0.96794 0.94000 1.43974 1.02522 1.64825 1.19304 1.19069 0.96149 1.37496 0.85517 0.91458 1.25179 0.97559 0.99022 0.97322 1.69963 1.22717 1.45233 1.16714 0.86382 0.79815 0.79723 0.80898 1.20905 1.21662 1.20860 0.91970 0.94371 0.92863 0.92093 0.92652 0.92228 0.93013 0.77110 0.89091 0.89961 0.88760 0.86693 0.87197 0.87344 0.86787 0.96449 0.89058 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.97 37.16 0.30 -2.24 16 2 C 0.16 3.35 3.50 -67.60 -0.24 3.12 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.13 5.37 -26.61 -0.14 -2.27 16 5 C -0.12 -1.89 5.36 -26.69 -0.14 -2.03 16 6 C 0.11 2.20 2.64 -67.81 -0.18 2.02 16 7 H 0.08 1.81 7.52 -51.93 -0.39 1.42 16 8 N -0.71 -11.67 5.08 -53.69 -0.27 -11.95 16 9 C 0.55 9.52 6.03 -10.98 -0.07 9.46 16 10 O -0.52 -11.06 16.64 5.56 0.09 -10.97 16 11 C -0.22 -2.97 1.72 -155.66 -0.27 -3.23 16 12 C 0.34 4.09 2.09 -26.73 -0.06 4.03 16 13 C -0.19 -2.05 9.06 37.16 0.34 -1.72 16 14 F -0.19 -2.51 17.01 2.25 0.04 -2.47 16 15 F -0.20 -2.32 15.64 2.25 0.04 -2.28 16 16 C -0.12 -1.50 9.59 -26.73 -0.26 -1.76 16 17 C -0.15 -1.73 9.68 -26.73 -0.26 -1.99 16 18 C 0.17 4.06 4.82 -3.71 -0.02 4.05 16 19 N -0.58 -14.36 2.98 -164.78 -0.49 -14.85 16 20 C -0.25 -6.85 8.50 -15.06 -0.13 -6.97 16 21 H 0.07 1.78 6.32 -52.49 -0.33 1.45 16 22 C 0.01 0.23 5.04 -17.43 -0.09 0.14 16 23 N -0.90 -26.27 11.15 55.49 0.62 -25.65 16 24 Si 0.90 22.11 29.57 -169.99 -5.03 17.08 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H 0.06 1.26 7.65 -51.93 -0.40 0.86 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.01 7.43 -51.93 -0.39 0.62 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 5.54 8.61 -40.82 -0.35 5.19 16 36 H 0.09 1.09 7.67 -51.92 -0.40 0.70 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 41 H 0.11 1.09 7.88 -51.93 -0.41 0.68 16 42 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.55 6.21 -51.93 -0.32 2.23 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -30.95 365.58 -7.87 -38.83 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.17 Total: 6.14 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.21 Total: 0.61 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.14 Total: -52.44 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.95 -7.87 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132305708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.075 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds