Wall clock time and date at job start Tue Mar 31 2020 12:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.58344 * 2 1 4 4 C 1.53186 * 109.58722 * 239.57743 * 2 1 3 5 5 C 1.53046 * 109.31208 * 185.57700 * 4 2 1 6 6 C 1.53037 * 109.53816 * 61.36579 * 5 4 2 7 7 H 1.08996 * 109.49622 * 58.58343 * 6 5 4 8 8 N 1.46493 * 109.52691 * 178.66872 * 6 5 4 9 9 C 1.34776 * 120.00377 * 204.85562 * 8 6 5 10 10 O 1.21281 * 119.99470 * 4.78290 * 9 8 6 11 11 C 1.50702 * 120.00286 * 184.78741 * 9 8 6 12 12 C 1.52998 * 115.54619 * 279.28184 * 11 9 8 13 13 C 1.53004 * 109.47469 * 303.28093 * 12 11 9 14 14 F 1.39904 * 109.47321 * 63.28343 * 12 11 9 15 15 F 1.39900 * 109.46990 * 183.28114 * 12 11 9 16 16 C 1.52997 * 117.50061 * 133.57645 * 11 9 8 17 17 C 1.52995 * 117.50145 * 64.95125 * 11 9 8 18 18 C 1.53198 * 109.31207 * 298.63610 * 6 5 4 19 19 N 1.46922 * 109.58636 * 120.28467 * 2 1 3 20 20 C 1.36937 * 120.63048 * 353.38106 * 19 2 1 21 21 H 1.07994 * 120.00257 * 32.60010 * 20 19 2 22 22 C 1.38811 * 119.99970 * 212.60818 * 20 19 2 23 23 N 1.31626 * 119.99704 * 10.79813 * 22 20 19 24 24 Si 1.86800 * 120.00254 * 190.80521 * 22 20 19 25 25 H 1.48500 * 109.46988 * 59.99492 * 24 22 20 26 26 H 1.48494 * 109.47323 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46790 * 299.99860 * 24 22 20 28 28 H 1.08990 * 109.47000 * 299.71751 * 1 2 3 29 29 H 1.09001 * 109.46766 * 59.71654 * 1 2 3 30 30 H 1.08992 * 109.46899 * 179.70791 * 1 2 3 31 31 H 1.08999 * 109.50210 * 305.52994 * 4 2 1 32 32 H 1.09002 * 109.50036 * 65.62783 * 4 2 1 33 33 H 1.09001 * 109.45898 * 301.34501 * 5 4 2 34 34 H 1.08999 * 109.45713 * 181.38538 * 5 4 2 35 35 H 0.97007 * 119.99842 * 24.84881 * 8 6 5 36 36 H 1.09007 * 109.46672 * 65.20039 * 13 12 11 37 37 H 1.08998 * 109.47205 * 185.19946 * 13 12 11 38 38 H 1.08997 * 109.46754 * 305.20217 * 13 12 11 39 39 H 1.08999 * 117.49619 * 359.97438 * 16 11 9 40 40 H 1.08996 * 117.50181 * 145.01855 * 16 11 9 41 41 H 1.09002 * 117.49992 * 214.98609 * 17 11 9 42 42 H 1.09003 * 117.49692 * 359.97438 * 17 11 9 43 43 H 1.08998 * 109.58155 * 294.84659 * 18 6 5 44 44 H 1.08999 * 109.58783 * 174.42419 * 18 6 5 45 45 H 0.97003 * 119.99394 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2445 5 6 3.5676 -0.8493 -1.1691 6 6 3.9570 -1.6656 0.0655 7 1 3.4984 -2.6527 0.0084 8 7 5.4142 -1.8058 0.1201 9 6 5.9671 -2.8464 0.7742 10 8 5.2597 -3.7128 1.2430 11 6 7.4642 -2.9334 0.9232 12 6 8.2179 -3.4750 -0.2931 13 6 7.6759 -4.8596 -0.6541 14 9 8.0399 -2.6076 -1.3763 15 9 9.5807 -3.5716 0.0078 16 6 8.0177 -3.2757 2.3078 17 6 8.1549 -1.8541 1.7592 18 6 3.4651 -0.9453 1.3249 19 7 2.0226 -0.6981 1.1953 20 6 1.1537 -1.1101 2.1702 21 1 0.1534 -1.4200 1.9063 22 6 1.5587 -1.1294 3.4978 23 7 2.6911 -0.5575 3.8488 24 14 0.4967 -1.9670 4.7863 25 1 0.3366 -3.4019 4.4391 26 1 1.1468 -1.8494 6.1162 27 1 -0.8373 -1.3159 4.8275 28 1 -0.3633 0.5094 0.8924 29 1 -0.3633 0.5182 -0.8875 30 1 -0.3633 -1.0276 -0.0052 31 1 1.6031 -1.7268 -1.2893 32 1 1.7661 -0.1693 -2.1366 33 1 4.0062 0.1462 -1.0994 34 1 3.9379 -1.3472 -2.0652 35 1 5.9812 -1.1496 -0.3146 36 1 6.6387 -4.7707 -0.9775 37 1 8.2730 -5.2845 -1.4610 38 1 7.7299 -5.5097 0.2191 39 1 7.2990 -3.4376 3.1111 40 1 8.9190 -3.8870 2.3525 41 1 9.1464 -1.5301 1.4428 42 1 7.5264 -1.0808 2.2011 43 1 3.9903 0.0038 1.4317 44 1 3.6518 -1.5690 2.1991 45 1 2.9742 -0.5713 4.7765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132305708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:46 Heat of formation + Delta-G solvation = -115.760190 kcal Electronic energy + Delta-G solvation = -28477.493008 eV Core-core repulsion = 24359.042681 eV Total energy + Delta-G solvation = -4118.450326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.11766 -48.10750 -41.30563 -39.48219 -37.65116 -36.03200 -34.65697 -32.38395 -32.17516 -31.72896 -27.91710 -27.02380 -25.81162 -24.20955 -23.75162 -23.45953 -22.00981 -21.26503 -20.61164 -19.04185 -18.50457 -18.29202 -17.41791 -17.36145 -17.08033 -16.72912 -15.88277 -15.80793 -15.40828 -15.24525 -14.99664 -14.96081 -14.79086 -14.47487 -14.33854 -14.19167 -14.03767 -13.56426 -13.50870 -13.29432 -13.06410 -12.85368 -12.76309 -12.71947 -12.61407 -12.56402 -12.33957 -12.14184 -12.00294 -11.79953 -11.64693 -11.50920 -11.37448 -11.16695 -10.90444 -10.55182 -10.12505 -8.57866 -7.85516 -5.36292 1.36017 1.41815 1.45723 1.50149 1.91831 2.30812 2.49590 2.59030 2.99639 3.17668 3.30738 3.45554 3.51612 3.73142 3.81988 3.87434 3.96582 4.07894 4.24210 4.38114 4.42989 4.54527 4.55192 4.59670 4.64102 4.70466 4.78697 4.80942 4.87945 4.91787 5.00472 5.01603 5.06011 5.17460 5.28171 5.31430 5.42627 5.54672 5.59734 5.70001 5.77223 6.41551 6.51636 7.14304 7.19755 7.88417 8.39615 9.19288 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.004465 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.392241 B = 6268.890049 C = 7441.382500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.054 0.946 8 N -0.700 5.700 9 C 0.552 3.448 10 O -0.568 6.568 11 C -0.230 4.230 12 C 0.342 3.658 13 C -0.188 4.188 14 F -0.198 7.198 15 F -0.189 7.189 16 C -0.121 4.121 17 C -0.134 4.134 18 C 0.184 3.816 19 N -0.602 5.602 20 C -0.253 4.253 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.933 5.933 24 Si 0.958 3.042 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.269 1.269 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.101 0.899 43 H -0.002 1.002 44 H 0.041 0.959 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.085 -2.917 -11.908 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.073 0.927 8 N -0.350 5.350 9 C 0.338 3.662 10 O -0.446 6.446 11 C -0.234 4.234 12 C 0.305 3.695 13 C -0.246 4.246 14 F -0.179 7.179 15 F -0.170 7.170 16 C -0.158 4.158 17 C -0.171 4.171 18 C 0.057 3.943 19 N -0.327 5.327 20 C -0.383 4.383 21 H 0.089 0.911 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.787 3.213 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.194 1.194 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.016 0.984 44 H 0.060 0.940 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.625 -3.465 -11.442 16.675 hybrid contribution -0.244 0.048 1.081 1.110 sum 11.381 -3.417 -10.361 15.765 Atomic orbital electron populations 1.21721 0.94732 1.01123 1.01013 1.20810 0.94312 0.93361 0.86715 0.96094 1.21949 0.94379 1.00911 0.98402 1.21650 0.97210 0.99949 0.95844 1.21613 0.78765 0.99333 0.97955 0.92739 1.45911 1.07842 1.26991 1.54243 1.19378 0.88096 0.81349 0.77416 1.90725 1.63847 1.40839 1.49230 1.22316 0.92277 1.12740 0.96039 1.19944 0.77197 0.90694 0.81627 1.22729 1.03205 0.92953 1.05694 1.93019 1.95182 1.72704 1.56952 1.93005 1.33759 1.96758 1.93442 1.23127 1.02794 0.99001 0.90889 1.23265 1.02512 0.92278 0.99043 1.20719 0.83911 0.95175 0.94492 1.44267 1.02454 1.65690 1.20265 1.19393 0.96533 1.36185 0.86213 0.91114 1.25893 0.98890 1.00426 0.99310 1.70128 1.24329 1.47157 1.16320 0.85478 0.78866 0.78579 0.78402 1.21102 1.22187 1.19446 0.94335 0.90353 0.93560 0.92853 0.88648 0.90983 0.89864 0.75323 0.90602 0.87588 0.88397 0.88795 0.84483 0.84735 0.88045 0.98369 0.93998 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 7.97 71.98 0.57 -4.04 16 2 C 0.15 6.08 3.50 44.98 0.16 6.23 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.65 5.37 30.67 0.16 -3.48 16 5 C -0.11 -3.26 5.36 30.62 0.16 -3.10 16 6 C 0.13 5.02 2.64 45.07 0.12 5.14 16 7 H 0.05 2.45 7.52 -2.39 -0.02 2.43 16 8 N -0.70 -23.05 5.08 -442.17 -2.25 -25.30 16 9 C 0.55 19.34 6.03 87.66 0.53 19.87 16 10 O -0.57 -25.29 16.64 -3.03 -0.05 -25.34 16 11 C -0.23 -5.99 1.72 -52.93 -0.09 -6.08 16 12 C 0.34 7.66 2.09 30.60 0.06 7.73 16 13 C -0.19 -3.80 9.06 71.98 0.65 -3.15 16 14 F -0.20 -4.64 17.01 44.97 0.77 -3.87 16 15 F -0.19 -3.93 15.64 44.97 0.70 -3.23 16 16 C -0.12 -2.84 9.59 30.59 0.29 -2.55 16 17 C -0.13 -2.99 9.68 30.59 0.30 -2.69 16 18 C 0.18 9.11 4.82 86.36 0.42 9.53 16 19 N -0.60 -30.32 2.98 -675.23 -2.01 -32.33 16 20 C -0.25 -14.06 8.50 84.03 0.71 -13.35 16 21 H 0.07 3.81 6.32 -2.91 -0.02 3.79 16 22 C -0.05 -2.88 5.04 84.86 0.43 -2.45 16 23 N -0.93 -56.92 11.15 21.65 0.24 -56.68 16 24 Si 0.96 46.85 29.57 68.60 2.03 48.88 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 28 H 0.04 1.53 7.65 -2.39 -0.02 1.52 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 1.70 7.43 -2.39 -0.02 1.68 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.41 11.01 8.61 -92.70 -0.80 10.21 16 36 H 0.07 1.78 7.67 -2.38 -0.02 1.76 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.14 2.45 7.69 -2.39 -0.02 2.44 16 41 H 0.13 2.33 7.88 -2.39 -0.02 2.31 16 42 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.04 2.48 6.21 -2.39 -0.01 2.47 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -71.03 365.58 4.11 -66.93 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.20 Total: 23.34 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.48 Total: 7.61 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -4.02 Total: -114.31 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.47 Total: -7.10 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -71.03 4.11 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132305708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.834 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds