Wall clock time and date at job start Tue Mar 31 2020 12:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.58072 * 2 1 4 4 C 1.53190 * 109.70491 * 239.63981 * 2 1 3 5 5 C 1.53105 * 109.33176 * 185.50344 * 4 2 1 6 6 C 1.53046 * 109.49872 * 61.34722 * 5 4 2 7 7 H 1.08999 * 109.49708 * 178.68650 * 6 5 4 8 8 N 1.46498 * 109.49966 * 58.61839 * 6 5 4 9 9 C 1.34779 * 119.99727 * 155.06602 * 8 6 5 10 10 O 1.21275 * 120.00179 * 4.76847 * 9 8 6 11 11 C 1.50701 * 119.99429 * 185.04630 * 9 8 6 12 12 C 1.53002 * 115.55439 * 40.60716 * 11 9 8 13 13 C 1.52995 * 109.47221 * 55.85090 * 12 11 9 14 14 F 1.39896 * 109.47257 * 175.85613 * 12 11 9 15 15 F 1.39903 * 109.47000 * 295.85318 * 12 11 9 16 16 C 1.53000 * 117.49570 * 254.89516 * 11 9 8 17 17 C 1.52997 * 60.00258 * 252.51332 * 16 11 9 18 18 C 1.53197 * 109.33815 * 298.64684 * 6 5 4 19 19 N 1.46927 * 108.77100 * 54.65710 * 18 6 5 20 20 C 1.36939 * 120.63216 * 126.41516 * 19 18 6 21 21 H 1.08000 * 120.00286 * 208.62895 * 20 19 18 22 22 C 1.38813 * 119.99795 * 28.62178 * 20 19 18 23 23 N 1.31615 * 120.00032 * 13.15119 * 22 20 19 24 24 Si 1.86796 * 119.99740 * 193.14707 * 22 20 19 25 25 H 1.48503 * 109.47194 * 60.00603 * 24 22 20 26 26 H 1.48498 * 109.47187 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47741 * 300.00420 * 24 22 20 28 28 H 1.08999 * 109.47255 * 299.71851 * 1 2 3 29 29 H 1.08996 * 109.47440 * 59.72322 * 1 2 3 30 30 H 1.09002 * 109.47107 * 179.72138 * 1 2 3 31 31 H 1.08997 * 109.49842 * 305.45977 * 4 2 1 32 32 H 1.09007 * 109.49675 * 65.52355 * 4 2 1 33 33 H 1.08991 * 109.45229 * 301.35771 * 5 4 2 34 34 H 1.08998 * 109.50485 * 181.36459 * 5 4 2 35 35 H 0.97002 * 119.99967 * 335.06570 * 8 6 5 36 36 H 1.08999 * 109.47319 * 54.30409 * 13 12 11 37 37 H 1.08995 * 109.47572 * 174.30730 * 13 12 11 38 38 H 1.09002 * 109.47005 * 294.30797 * 13 12 11 39 39 H 1.09001 * 117.50267 * 0.02562 * 16 11 9 40 40 H 1.09008 * 117.49836 * 145.02600 * 16 11 9 41 41 H 1.09004 * 117.49723 * 252.51542 * 17 16 11 42 42 H 1.09003 * 117.50214 * 107.48710 * 17 16 11 43 43 H 1.09002 * 109.58400 * 174.43713 * 18 6 5 44 44 H 1.08995 * 109.58769 * 294.72711 * 18 6 5 45 45 H 0.97002 * 120.00028 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 3.5713 -0.8446 -1.1677 6 6 3.9602 -1.6607 0.0672 7 1 5.0446 -1.7628 0.1090 8 7 3.3467 -2.9887 -0.0112 9 6 3.9035 -4.0279 0.6420 10 8 4.8613 -3.8475 1.3636 11 6 3.3396 -5.4149 0.4706 12 6 2.9201 -5.7855 -0.9534 13 6 4.1068 -5.5962 -1.9003 14 9 2.5067 -7.1216 -0.9849 15 9 1.8646 -4.9611 -1.3580 16 6 2.5130 -5.9887 1.6230 17 6 3.9188 -6.5263 1.3483 18 6 3.4654 -0.9423 1.3265 19 7 2.0226 -0.6980 1.1954 20 6 1.1534 -1.1124 2.1691 21 1 0.1347 -1.3632 1.9125 22 6 1.5817 -1.2103 3.4859 23 7 2.7250 -0.6680 3.8480 24 14 0.5354 -2.1115 4.7438 25 1 0.3568 -3.5232 4.3189 26 1 1.2094 -2.0738 6.0665 27 1 -0.7920 -1.4537 4.8462 28 1 -0.3634 0.5094 0.8925 29 1 -0.3634 0.5181 -0.8874 30 1 -0.3633 -1.0277 -0.0050 31 1 1.6080 -1.7258 -1.2904 32 1 1.7684 -0.1676 -2.1365 33 1 4.0077 0.1516 -1.0968 34 1 3.9441 -1.3414 -2.0634 35 1 2.5397 -3.1201 -0.5332 36 1 4.9621 -6.1603 -1.5282 37 1 3.8396 -5.9551 -2.8941 38 1 4.3644 -4.5384 -1.9531 39 1 2.3766 -5.3629 2.5050 40 1 1.6698 -6.6304 1.3669 41 1 4.0005 -7.5216 0.9113 42 1 4.7077 -6.2543 2.0495 43 1 3.6524 -1.5664 2.2004 44 1 3.9904 0.0066 1.4360 45 1 3.0241 -0.7360 4.7683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132305709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:50 Heat of formation + Delta-G solvation = -92.451763 kcal Electronic energy + Delta-G solvation = -29577.558235 eV Core-core repulsion = 25460.118638 eV Total energy + Delta-G solvation = -4117.439597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.08551 -47.08414 -39.84354 -37.99577 -36.13951 -34.12336 -32.73157 -31.51928 -30.52359 -29.82657 -26.36542 -25.21085 -24.65577 -22.74661 -22.41731 -22.12635 -20.46374 -19.75816 -18.74347 -17.98508 -17.39255 -16.38465 -16.26585 -15.77676 -15.28819 -14.95906 -14.43316 -14.21009 -13.98359 -13.86026 -13.68834 -13.58695 -13.33600 -13.27842 -12.94706 -12.79620 -12.66779 -12.46498 -12.26286 -11.88402 -11.64404 -11.47850 -11.20505 -11.14801 -10.93087 -10.88576 -10.68738 -10.56400 -10.37395 -10.33946 -10.30127 -9.93224 -9.58995 -9.44081 -9.34436 -8.42646 -8.37040 -6.57713 -5.71326 -3.16013 2.79985 3.38726 3.44280 3.45085 3.45929 3.54146 3.82251 4.01717 4.24647 4.51565 4.51705 4.86356 4.93051 5.03870 5.31034 5.33841 5.37661 5.44111 5.52218 5.53251 5.61345 5.63212 5.67961 5.73750 5.95580 6.02792 6.13111 6.16086 6.16853 6.34690 6.37025 6.45717 6.53178 6.63308 6.70619 6.91820 7.06761 7.14945 7.41084 7.75518 7.85808 8.09536 8.52591 8.73256 9.26855 9.91001 10.46602 11.36060 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.006572 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.534419 B = 4259.321073 C = 5214.993065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.074 0.926 8 N -0.694 5.694 9 C 0.557 3.443 10 O -0.534 6.534 11 C -0.223 4.223 12 C 0.331 3.669 13 C -0.191 4.191 14 F -0.196 7.196 15 F -0.192 7.192 16 C -0.134 4.134 17 C -0.126 4.126 18 C 0.160 3.840 19 N -0.582 5.582 20 C -0.247 4.247 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.897 3.103 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -8.736 -12.112 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.092 0.908 8 N -0.346 5.346 9 C 0.340 3.660 10 O -0.412 6.412 11 C -0.227 4.227 12 C 0.294 3.706 13 C -0.249 4.249 14 F -0.177 7.177 15 F -0.173 7.173 16 C -0.171 4.171 17 C -0.163 4.163 18 C 0.033 3.967 19 N -0.306 5.306 20 C -0.377 4.377 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.727 3.273 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.042 0.958 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.455 -8.565 -11.451 14.509 hybrid contribution -1.152 -0.479 0.406 1.312 sum 1.303 -9.044 -11.045 14.335 Atomic orbital electron populations 1.21797 0.96125 1.01248 1.00173 1.20459 0.92898 0.93608 0.87181 0.95776 1.22086 0.95107 1.00823 0.99099 1.21703 0.97104 1.00141 0.96691 1.21838 0.96748 0.81799 0.98514 0.90770 1.45956 1.29584 1.08294 1.50761 1.18665 0.83183 0.83875 0.80234 1.90692 1.28015 1.84825 1.37634 1.22505 1.11198 0.96884 0.92108 1.20156 0.84224 0.72585 0.93604 1.22749 0.96848 1.05857 0.99433 1.92986 1.91792 1.35570 1.97317 1.92987 1.60547 1.72079 1.91717 1.23103 0.95060 1.01803 0.97177 1.23060 0.97959 0.95280 1.00021 1.21235 0.83621 0.97153 0.94648 1.44031 1.02679 1.64841 1.19001 1.19069 0.94455 1.37894 0.86247 0.91475 1.25044 0.97524 0.99941 0.96943 1.69945 1.21835 1.45781 1.17010 0.86463 0.79763 0.79998 0.81078 1.21135 1.21710 1.21024 0.92049 0.94422 0.92938 0.92583 0.92837 0.91035 0.93108 0.76252 0.88991 0.89788 0.89000 0.86810 0.87393 0.87425 0.86408 0.87909 0.95826 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.95 37.16 0.30 -2.21 16 2 C 0.17 3.29 3.49 -67.60 -0.24 3.05 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.15 5.21 -26.58 -0.14 -2.29 16 5 C -0.12 -1.87 5.59 -26.65 -0.15 -2.02 16 6 C 0.12 2.22 2.77 -67.81 -0.19 2.03 16 7 H 0.07 1.42 7.65 -51.93 -0.40 1.02 16 8 N -0.69 -12.64 4.59 -53.69 -0.25 -12.89 16 9 C 0.56 10.41 6.42 -10.98 -0.07 10.34 16 10 O -0.53 -11.74 15.97 5.56 0.09 -11.65 16 11 C -0.22 -3.40 1.89 -155.66 -0.29 -3.69 16 12 C 0.33 4.40 2.01 -26.73 -0.05 4.34 16 13 C -0.19 -2.03 9.04 37.16 0.34 -1.70 16 14 F -0.20 -2.55 15.64 2.25 0.04 -2.51 16 15 F -0.19 -2.83 15.03 2.25 0.03 -2.80 16 16 C -0.13 -2.00 9.69 -26.73 -0.26 -2.26 16 17 C -0.13 -1.67 9.47 -26.73 -0.25 -1.92 16 18 C 0.16 3.81 4.89 -3.71 -0.02 3.79 16 19 N -0.58 -13.88 2.91 -164.77 -0.48 -14.36 16 20 C -0.25 -6.53 8.62 -15.06 -0.13 -6.66 16 21 H 0.07 1.74 6.19 -52.49 -0.32 1.42 16 22 C 0.00 0.11 5.01 -17.43 -0.09 0.02 16 23 N -0.90 -26.35 10.99 55.49 0.61 -25.74 16 24 Si 0.90 21.95 29.57 -169.99 -5.03 16.92 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 31 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.40 6.99 4.66 -40.82 -0.19 6.80 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.03 7.49 -51.93 -0.39 0.64 16 39 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 40 H 0.11 1.43 7.91 -51.92 -0.41 1.02 16 41 H 0.11 1.16 7.66 -51.93 -0.40 0.76 16 42 H 0.12 1.67 7.68 -51.93 -0.40 1.27 16 43 H 0.10 2.88 5.94 -51.93 -0.31 2.57 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -30.38 356.30 -7.73 -38.11 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.87 Total: 8.71 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.25 Total: 0.83 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.12 Total: -52.99 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.31 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.38 -7.73 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132305709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.341 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds