Wall clock time and date at job start Tue Mar 31 2020 11:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47096 * 2 1 4 4 C 1.53001 * 109.47279 * 239.99604 * 2 1 3 5 5 C 1.52999 * 109.46658 * 60.00115 * 4 2 1 6 6 F 1.39898 * 109.47023 * 175.00175 * 5 4 2 7 7 F 1.39901 * 109.47434 * 295.00092 * 5 4 2 8 8 C 1.50706 * 109.47176 * 119.99588 * 2 1 3 9 9 O 1.21281 * 119.99747 * 126.49259 * 8 2 1 10 10 N 1.34771 * 120.00160 * 306.49801 * 8 2 1 11 11 C 1.47888 * 134.34334 * 175.02851 * 10 8 2 12 12 C 1.52367 * 85.59513 * 156.53108 * 11 10 8 13 13 C 1.47886 * 134.34344 * 355.05488 * 10 8 2 14 14 C 1.53655 * 116.39923 * 141.34526 * 12 11 10 15 15 C 1.54607 * 102.72953 * 162.91863 * 14 12 11 16 16 N 1.47138 * 107.36631 * 339.24976 * 15 14 12 17 17 C 1.36940 * 125.58400 * 179.07555 * 16 15 14 18 18 H 1.07996 * 119.99765 * 179.97438 * 17 16 15 19 19 C 1.38807 * 119.99897 * 359.97438 * 17 16 15 20 20 N 1.31619 * 120.00725 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99611 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47292 * 89.99949 * 21 19 17 23 23 H 1.48504 * 109.47262 * 209.99664 * 21 19 17 24 24 H 1.48495 * 109.47299 * 329.99907 * 21 19 17 25 25 C 1.47718 * 108.82481 * 359.07227 * 16 15 14 26 26 H 1.09001 * 109.46750 * 300.00278 * 1 2 3 27 27 H 1.08997 * 109.47366 * 59.99962 * 1 2 3 28 28 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47098 * 185.29529 * 3 2 1 30 30 H 1.08998 * 109.47372 * 305.29279 * 3 2 1 31 31 H 1.08993 * 109.47406 * 65.29451 * 3 2 1 32 32 H 1.08999 * 109.47086 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47030 * 300.00434 * 4 2 1 34 34 H 1.09000 * 109.47795 * 55.00088 * 5 4 2 35 35 H 1.09003 * 113.85349 * 42.36427 * 11 10 8 36 36 H 1.09008 * 113.97126 * 270.71487 * 11 10 8 37 37 H 1.09001 * 113.85664 * 89.29478 * 13 10 8 38 38 H 1.09001 * 113.85393 * 317.62964 * 13 10 8 39 39 H 1.08999 * 110.75991 * 281.23272 * 14 12 11 40 40 H 1.08997 * 110.75524 * 44.61130 * 14 12 11 41 41 H 1.08997 * 109.86201 * 98.69332 * 15 14 12 42 42 H 1.09000 * 109.86460 * 219.66863 * 15 14 12 43 43 H 0.96998 * 120.00271 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.40235 * 263.65679 * 25 16 15 45 45 H 1.09007 * 110.39863 * 141.25122 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -0.0001 -2.4984 6 9 2.0878 -0.5899 -3.6378 7 9 0.1357 -0.0987 -2.5574 8 6 2.0324 -0.7103 1.2306 9 8 2.8234 -1.6234 1.1232 10 7 1.6025 -0.3311 2.4503 11 6 1.8030 -0.8444 3.8227 12 6 1.4677 0.5714 4.2751 13 6 0.7423 0.7636 2.9488 14 6 0.6129 0.6982 5.5456 15 6 0.8351 2.1710 5.9601 16 7 2.0803 2.6242 5.3205 17 6 2.6183 3.8792 5.4240 18 1 3.5410 4.1148 4.9147 19 6 1.9777 4.8484 6.1835 20 7 0.8529 4.5616 6.8038 21 14 2.7113 6.5606 6.3240 22 1 2.1799 7.4179 5.2340 23 1 2.3475 7.1487 7.6382 24 1 4.1896 6.4766 6.2115 25 6 2.6549 1.5034 4.5487 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1259 1.4440 -0.0948 30 1 1.6014 1.9830 -0.8388 31 1 1.7562 1.9282 0.9335 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7490 -1.2491 34 1 1.8183 1.0502 -2.4549 35 1 2.8292 -1.1438 4.0358 36 1 1.0690 -1.5903 4.1281 37 1 -0.3172 0.5101 2.9850 38 1 0.9359 1.7265 2.4761 39 1 -0.4383 0.5135 5.3241 40 1 0.9703 0.0205 6.3208 41 1 -0.0004 2.7820 5.6185 42 1 0.9263 2.2410 7.0440 43 1 0.4051 5.2390 7.3343 44 1 3.4151 0.9880 5.1357 45 1 3.0780 1.8650 3.6114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147703464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:56 Heat of formation + Delta-G solvation = -78.079546 kcal Electronic energy + Delta-G solvation = -27975.899558 eV Core-core repulsion = 23859.083187 eV Total energy + Delta-G solvation = -4116.816371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.25013 -47.24506 -40.87000 -38.87444 -36.04687 -35.65001 -32.28941 -30.23846 -29.34884 -28.22214 -27.60892 -26.25400 -25.92360 -24.60954 -23.66189 -21.45367 -20.30920 -18.78732 -18.45756 -17.88967 -17.55593 -16.95532 -16.59170 -16.00312 -15.81389 -15.43429 -14.80941 -14.60791 -14.43504 -14.24055 -13.96100 -13.81715 -13.73885 -13.31713 -13.16398 -12.86743 -12.78687 -12.38832 -12.28815 -12.08819 -11.91633 -11.78368 -11.57942 -11.33125 -11.23581 -11.09620 -10.97914 -10.96009 -10.76534 -10.44413 -10.19726 -10.13741 -9.89906 -9.71746 -9.41791 -8.65289 -8.57789 -6.89771 -5.76931 -3.10637 2.62998 2.79904 3.36024 3.41948 3.43459 3.59158 3.93643 4.10793 4.30191 4.40529 4.47196 4.63428 4.68932 4.74859 4.89208 4.96487 5.16352 5.33702 5.38057 5.44584 5.45426 5.48176 5.54898 5.56355 5.65447 5.68691 5.70347 5.75229 5.77269 5.88637 6.05184 6.10203 6.11728 6.18515 6.41515 6.46756 6.61294 6.66882 7.50027 7.55005 7.76741 7.78002 8.17088 8.19370 9.16376 9.76080 10.41410 11.34564 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.003371 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.141367 B = 8303.354994 C = 9087.984832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.074 4.074 3 C -0.154 4.154 4 C -0.147 4.147 5 C 0.260 3.740 6 F -0.207 7.207 7 F -0.200 7.200 8 C 0.548 3.452 9 O -0.549 6.549 10 N -0.635 5.635 11 C 0.121 3.879 12 C -0.104 4.104 13 C 0.119 3.881 14 C -0.132 4.132 15 C 0.179 3.821 16 N -0.605 5.605 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.163 3.837 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -9.147 -13.504 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.077 4.077 3 C -0.211 4.211 4 C -0.185 4.185 5 C 0.206 3.794 6 F -0.188 7.188 7 F -0.182 7.182 8 C 0.337 3.663 9 O -0.427 6.427 10 N -0.369 5.369 11 C -0.001 4.001 12 C -0.106 4.106 13 C -0.002 4.002 14 C -0.171 4.171 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.037 3.963 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.031 -9.497 -13.670 16.768 hybrid contribution 0.208 0.828 0.097 0.860 sum -1.823 -8.668 -13.573 16.207 Atomic orbital electron populations 1.22378 0.91844 1.03315 1.04606 1.20610 0.98007 0.96766 0.92364 1.22077 1.01979 0.93122 1.03970 1.22486 1.03934 1.01047 0.91016 1.22045 0.74540 0.99205 0.83577 1.92984 1.85056 1.86858 1.53917 1.92896 1.31443 1.97493 1.96321 1.19927 0.80695 0.82743 0.82959 1.90684 1.34895 1.31164 1.85997 1.50127 1.49809 1.31795 1.05164 1.23006 1.02209 0.96554 0.78344 1.22479 0.98857 0.94541 0.94742 1.23172 0.94704 0.90617 0.91754 1.22680 0.98102 1.01062 0.95218 1.21203 0.89148 0.87248 0.97007 1.44557 1.24649 1.07675 1.56246 1.19033 1.05102 0.85714 1.25865 0.90512 1.24776 0.97395 0.98312 0.99762 1.69951 1.17842 1.33019 1.36059 0.86141 0.78358 0.84260 0.77128 1.21602 1.21665 1.20715 1.21027 0.91975 0.88406 0.94941 0.91442 0.89277 0.92147 0.91468 0.91397 0.90387 0.87832 0.88877 0.86875 0.90039 0.89757 0.89626 0.89194 0.91738 0.91707 0.93455 0.93845 0.93732 0.95786 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 7.54 37.16 0.28 -1.34 16 2 C -0.07 -0.81 0.56 -155.66 -0.09 -0.89 16 3 C -0.15 -1.52 7.92 37.16 0.29 -1.22 16 4 C -0.15 -1.49 3.92 -26.73 -0.10 -1.60 16 5 C 0.26 2.31 4.96 37.16 0.18 2.50 16 6 F -0.21 -2.20 17.34 2.25 0.04 -2.16 16 7 F -0.20 -2.00 13.99 2.25 0.03 -1.97 16 8 C 0.55 7.83 6.71 -10.99 -0.07 7.76 16 9 O -0.55 -9.64 16.71 5.56 0.09 -9.55 16 10 N -0.63 -8.71 3.52 -186.88 -0.66 -9.37 16 11 C 0.12 1.63 8.21 -3.60 -0.03 1.60 16 12 C -0.10 -1.59 0.99 -154.85 -0.15 -1.75 16 13 C 0.12 1.59 5.61 -3.60 -0.02 1.56 16 14 C -0.13 -2.13 6.36 -25.55 -0.16 -2.29 16 15 C 0.18 3.97 5.39 -2.85 -0.02 3.95 16 16 N -0.60 -14.38 3.41 -170.50 -0.58 -14.96 16 17 C -0.23 -6.08 10.28 -15.06 -0.15 -6.23 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -25.86 10.30 55.49 0.57 -25.29 16 21 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.16 3.12 6.63 -3.17 -0.02 3.10 16 26 H 0.07 0.66 5.62 -51.93 -0.29 0.37 16 27 H 0.09 0.80 5.39 -51.93 -0.28 0.52 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.07 0.51 6.61 -51.93 -0.34 0.17 16 31 H 0.08 0.87 5.48 -51.93 -0.28 0.59 16 32 H 0.10 1.07 8.03 -51.93 -0.42 0.66 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 0.73 6.29 -51.93 -0.33 0.40 16 35 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 36 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.09 0.99 7.63 -51.93 -0.40 0.59 16 38 H 0.09 1.25 6.00 -51.93 -0.31 0.94 16 39 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 42 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.76 8.07 -51.92 -0.42 0.34 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -30.89 351.82 -7.15 -38.04 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.76 Total: -1.27 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.16 Total: 4.90 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.67 Total: -49.62 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.07 Total: -4.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.89 -7.15 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147703464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.040 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds