Wall clock time and date at job start Tue Mar 31 2020 11:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39895 * 109.47170 * 2 1 4 4 F 1.39897 * 109.47213 * 239.99336 * 2 1 3 5 5 C 1.53007 * 109.46633 * 119.99730 * 2 1 3 6 6 C 1.52998 * 109.46685 * 180.02562 * 5 2 1 7 7 C 1.50705 * 109.47269 * 180.02562 * 6 5 2 8 8 O 1.21283 * 119.99675 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00468 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00155 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46898 * 179.97438 * 11 10 9 13 13 C 1.29453 * 117.69778 * 95.00126 * 12 11 10 14 14 C 1.50314 * 123.65486 * 181.13771 * 13 12 11 15 15 N 1.47126 * 109.10610 * 348.54061 * 14 13 12 16 16 C 1.36937 * 121.53633 * 223.15752 * 15 14 13 17 17 H 1.07997 * 119.99691 * 156.35057 * 16 15 14 18 18 C 1.38812 * 119.99919 * 336.35140 * 16 15 14 19 19 N 1.31617 * 120.00056 * 344.28136 * 18 16 15 20 20 Si 1.86801 * 120.00087 * 164.27882 * 18 16 15 21 21 H 1.48495 * 109.46836 * 94.57576 * 20 18 16 22 22 H 1.48492 * 109.47207 * 214.57842 * 20 18 16 23 23 H 1.48505 * 109.46960 * 334.57989 * 20 18 16 24 24 C 1.47346 * 117.08841 * 43.37697 * 15 14 13 25 25 C 1.49970 * 117.69333 * 275.01852 * 12 11 10 26 26 H 1.08995 * 109.46978 * 300.00670 * 1 2 3 27 27 H 1.09002 * 109.46767 * 60.00099 * 1 2 3 28 28 H 1.09000 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46942 * 59.99927 * 5 2 1 30 30 H 1.08995 * 109.47112 * 299.99518 * 5 2 1 31 31 H 1.08996 * 109.47512 * 60.00249 * 6 5 2 32 32 H 1.09008 * 109.47165 * 299.99587 * 6 5 2 33 33 H 0.97005 * 119.99630 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.46889 * 60.00251 * 10 9 7 35 35 H 1.09008 * 109.46764 * 300.00217 * 10 9 7 36 36 H 1.09003 * 109.47322 * 59.99823 * 11 10 9 37 37 H 1.08999 * 109.47397 * 299.99550 * 11 10 9 38 38 H 1.07999 * 118.16688 * 0.85284 * 13 12 11 39 39 H 1.09007 * 109.52348 * 108.64837 * 14 13 12 40 40 H 1.09001 * 109.52266 * 228.83155 * 14 13 12 41 41 H 0.97002 * 120.00389 * 180.02562 * 19 18 16 42 42 H 1.08993 * 109.77660 * 178.40331 * 24 15 14 43 43 H 1.09000 * 109.77612 * 57.59524 * 24 15 14 44 44 H 1.09000 * 109.31771 * 281.29104 * 25 12 11 45 45 H 1.09004 * 109.31612 * 40.71818 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2494 6 6 3.5699 -0.7207 1.2497 7 6 4.0723 -1.4316 2.4799 8 8 3.2842 -1.8936 3.2776 9 7 5.3973 -1.5549 2.6932 10 6 5.8856 -2.2455 3.8894 11 6 7.4156 -2.2450 3.8897 12 6 7.9179 -2.9549 5.1205 13 6 8.2130 -4.2107 5.0125 14 6 8.7008 -5.0533 6.1578 15 7 9.0390 -4.1772 7.2903 16 6 10.1760 -4.3683 8.0291 17 1 10.6076 -3.5449 8.5787 18 6 10.7740 -5.6203 8.0713 19 7 10.1063 -6.6822 7.6728 20 14 12.5263 -5.7980 8.6938 21 1 12.5059 -6.1405 10.1385 22 1 13.2127 -6.8768 7.9388 23 1 13.2530 -4.5177 8.4987 24 6 8.0977 -3.0865 7.5993 25 6 8.0402 -2.1568 6.3843 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6766 -1.7488 1.2494 30 1 1.6767 -0.2073 2.1393 31 1 3.9330 0.3070 1.2499 32 1 3.9337 -1.2344 0.3597 33 1 6.0277 -1.1856 2.0550 34 1 5.5222 -3.2731 3.8894 35 1 5.5223 -1.7315 4.7794 36 1 7.7787 -1.2172 3.8898 37 1 7.7793 -2.7587 2.9998 38 1 8.0981 -4.6802 4.0467 39 1 7.9189 -5.7525 6.4544 40 1 9.5882 -5.6067 5.8508 41 1 10.5240 -7.5572 7.7027 42 1 8.4475 -2.5333 8.4708 43 1 7.1078 -3.4983 7.7959 44 1 8.9498 -1.5574 6.3456 45 1 7.1793 -1.4947 6.4773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160537046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:57 Heat of formation + Delta-G solvation = -121.733413 kcal Electronic energy + Delta-G solvation = -25755.954796 eV Core-core repulsion = 21637.245451 eV Total energy + Delta-G solvation = -4118.709345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.36513 -47.33597 -39.91664 -37.92558 -35.56525 -34.49829 -33.57972 -31.57627 -30.99797 -29.83262 -28.71119 -26.01002 -24.78027 -23.00673 -22.46811 -21.87060 -21.00205 -20.42742 -18.04618 -17.75283 -17.57150 -16.72866 -16.23846 -16.12831 -16.07294 -15.53263 -15.10764 -14.73400 -14.18961 -14.12252 -13.80344 -13.70920 -13.66892 -13.59367 -13.46277 -13.22443 -12.98576 -12.70468 -12.60995 -12.27199 -12.20574 -12.00320 -11.68719 -11.55734 -11.42438 -11.26876 -11.00698 -10.91090 -10.71591 -10.33302 -10.28580 -10.03116 -9.80326 -9.54029 -9.18504 -8.64815 -7.92145 -6.72142 -5.77983 -3.16196 2.44592 2.76815 3.06327 3.38146 3.40550 3.45076 3.47480 3.71300 3.93637 4.00003 4.46996 4.50479 4.62420 4.72315 4.99875 5.04729 5.09285 5.10421 5.19733 5.28054 5.34796 5.40638 5.47609 5.52520 5.55869 5.64196 5.79112 6.00229 6.04271 6.14922 6.21397 6.31891 6.40389 6.56206 6.79662 6.91209 7.23592 7.29131 7.34558 7.41718 7.75837 7.88790 8.03019 8.39809 9.21263 9.84318 10.43295 11.32506 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.044064 B = 0.001847 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.284498 B =15152.801478 C =15223.147093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.202 7.202 4 F -0.202 7.202 5 C -0.144 4.144 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.541 6.541 9 N -0.729 5.729 10 C 0.123 3.877 11 C -0.092 4.092 12 C -0.143 4.143 13 C -0.146 4.146 14 C 0.195 3.805 15 N -0.595 5.595 16 C -0.244 4.244 17 H 0.068 0.932 18 C -0.003 4.003 19 N -0.909 5.909 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.142 3.858 25 C -0.091 4.091 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.098 13.999 -17.061 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 F -0.183 7.183 4 F -0.183 7.183 5 C -0.182 4.182 6 C -0.187 4.187 7 C 0.299 3.701 8 O -0.418 6.418 9 N -0.381 5.381 10 C 0.000 4.000 11 C -0.129 4.129 12 C -0.144 4.144 13 C -0.166 4.166 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.201 4.201 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.016 3.984 25 C -0.130 4.130 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.557 13.497 -16.483 26.981 hybrid contribution 1.364 0.040 -0.258 1.389 sum -15.193 13.537 -16.741 26.350 Atomic orbital electron populations 1.22763 0.91348 1.05675 1.05423 1.21199 0.94030 0.75686 0.84203 1.93011 1.90574 1.37820 1.96885 1.93013 1.90569 1.80934 1.53757 1.22385 0.95686 1.03673 0.96491 1.21643 0.96212 1.02981 0.97881 1.20445 0.82480 0.79855 0.87305 1.90730 1.55248 1.48636 1.47199 1.46120 1.06925 1.58883 1.26133 1.21459 0.94176 0.97483 0.86834 1.20908 0.93198 1.01082 0.97751 1.20224 1.04095 0.95339 0.94708 1.23119 0.97683 0.95626 1.00126 1.19729 0.99407 0.90254 0.83547 1.44175 1.22727 1.32658 1.32304 1.19183 0.99937 0.93657 1.24582 0.91385 1.24988 0.99101 0.95174 1.00799 1.70018 1.35459 0.97759 1.52257 0.86246 0.84758 0.77342 0.78250 1.21516 1.21598 1.20516 1.20958 0.93190 0.90062 0.94218 1.20758 1.00015 0.97727 0.94497 0.89076 0.90012 0.89064 0.87856 0.87872 0.88080 0.88076 0.76592 0.91243 0.91240 0.91461 0.91527 0.89083 0.94412 0.89097 0.93655 0.92550 0.95881 0.91945 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.89 9.38 37.16 0.35 -0.54 16 2 C 0.28 1.98 2.11 -26.72 -0.06 1.93 16 3 F -0.20 -1.70 16.54 2.25 0.04 -1.67 16 4 F -0.20 -1.72 16.54 2.25 0.04 -1.68 16 5 C -0.14 -1.04 4.09 -26.73 -0.11 -1.15 16 6 C -0.15 -1.11 5.46 -27.88 -0.15 -1.26 16 7 C 0.51 5.64 7.83 -10.98 -0.09 5.56 16 8 O -0.54 -8.14 15.98 5.56 0.09 -8.05 16 9 N -0.73 -7.29 5.56 -60.29 -0.33 -7.62 16 10 C 0.12 1.55 5.66 -4.04 -0.02 1.53 16 11 C -0.09 -1.16 5.32 -27.88 -0.15 -1.31 16 12 C -0.14 -2.45 5.11 -100.99 -0.52 -2.96 16 13 C -0.15 -2.82 9.47 -35.78 -0.34 -3.16 16 14 C 0.20 4.73 5.25 -5.04 -0.03 4.70 16 15 N -0.60 -15.14 3.01 -173.57 -0.52 -15.66 16 16 C -0.24 -6.75 9.71 -15.06 -0.15 -6.90 16 17 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 18 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 19 N -0.91 -26.46 11.07 55.49 0.61 -25.85 16 20 Si 0.90 21.80 29.58 -169.99 -5.03 16.77 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.14 3.02 6.57 -3.53 -0.02 3.00 16 25 C -0.09 -1.60 5.95 -28.18 -0.17 -1.77 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.10 0.64 7.80 -51.93 -0.41 0.24 16 32 H 0.10 0.65 7.80 -51.92 -0.41 0.25 16 33 H 0.40 2.82 8.47 -40.82 -0.35 2.47 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.96 8.08 -51.92 -0.42 0.54 16 36 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 37 H 0.07 0.79 7.78 -51.93 -0.40 0.38 16 38 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 39 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.09 2.43 6.39 -51.93 -0.33 2.10 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -32.58 374.14 -8.32 -40.90 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.32 Total: -0.26 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.53 Total: -2.52 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.24 Total: -49.13 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.07 Total: -3.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.58 -8.32 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160537046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.829 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds