Wall clock time and date at job start Tue Mar 31 2020 11:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47037 * 2 1 4 4 H 1.08994 * 109.47235 * 304.99630 * 3 2 1 5 5 C 1.50698 * 109.46749 * 184.99713 * 3 2 1 6 6 H 1.08000 * 120.00019 * 239.99674 * 5 3 2 7 7 C 1.37879 * 120.00220 * 60.00585 * 5 3 2 8 8 N 1.31511 * 119.99835 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00394 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46904 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47253 * 119.99414 * 9 7 5 12 12 H 1.48499 * 109.47187 * 239.99961 * 9 7 5 13 13 N 1.46496 * 109.46916 * 65.00134 * 3 2 1 14 14 C 1.38743 * 119.99960 * 274.99567 * 13 3 2 15 15 N 1.32306 * 119.80201 * 0.02562 * 14 13 3 16 16 C 1.31970 * 121.76852 * 179.97438 * 15 14 13 17 17 C 1.38202 * 121.17152 * 359.97340 * 16 15 14 18 18 C 1.50706 * 120.26094 * 180.02562 * 17 16 15 19 19 C 1.38528 * 119.47579 * 0.30060 * 17 16 15 20 20 C 1.39714 * 118.37702 * 359.48713 * 19 17 16 21 21 C 1.43194 * 120.59598 * 180.24052 * 20 19 17 22 22 C 5.70242 * 91.55529 * 53.54794 * 2 1 3 23 23 Si 7.09588 * 101.04605 * 60.36005 * 2 1 3 24 24 C 1.86304 * 109.47077 * 278.44906 * 23 22 21 25 25 C 1.86299 * 109.47403 * 38.44846 * 23 22 21 26 26 C 1.86296 * 109.47022 * 158.45112 * 23 22 21 27 27 H 1.09001 * 109.47326 * 300.00091 * 1 2 3 28 28 H 1.08999 * 109.47171 * 60.00358 * 1 2 3 29 29 H 1.08998 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47326 * 239.99909 * 2 1 3 31 31 H 1.08999 * 109.47171 * 119.99642 * 2 1 3 32 32 H 0.97004 * 120.00420 * 180.02562 * 8 7 5 33 33 H 0.97000 * 120.00141 * 95.00123 * 13 3 2 34 34 H 1.08001 * 119.41265 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.46953 * 90.00145 * 18 17 16 36 36 H 1.09000 * 109.47318 * 209.99743 * 18 17 16 37 37 H 1.09000 * 109.47161 * 330.00373 * 18 17 16 38 38 H 1.08000 * 120.81370 * 179.72177 * 19 17 16 39 39 H 1.09009 * 109.47090 * 60.00129 * 24 23 22 40 40 H 1.08993 * 109.47089 * 179.97438 * 24 23 22 41 41 H 1.08993 * 109.47042 * 300.00354 * 24 23 22 42 42 H 1.08998 * 109.46801 * 59.99919 * 25 23 22 43 43 H 1.08993 * 109.47153 * 179.97438 * 25 23 22 44 44 H 1.08995 * 109.47241 * 300.00689 * 25 23 22 45 45 H 1.09001 * 109.47409 * 60.00213 * 26 23 22 46 46 H 1.09001 * 109.47107 * 179.97438 * 26 23 22 47 47 H 1.09004 * 109.47262 * 299.99625 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3368 -2.1728 9 14 6.0050 0.8812 -1.3817 10 1 6.5987 1.5472 -0.1945 11 1 6.4971 -0.5176 -1.4628 12 1 6.3991 1.6167 -2.6101 13 7 1.6524 2.0975 1.2518 14 6 0.3993 2.6811 1.3703 15 7 -0.4427 2.6434 0.3505 16 6 -1.6440 3.1854 0.4209 17 6 -2.0766 3.8190 1.5704 18 6 -3.4528 4.4305 1.6285 19 6 -1.2331 3.8926 2.6668 20 6 0.0322 3.3080 2.5716 21 6 0.9404 3.3516 3.6779 22 6 1.6848 3.3868 4.5851 23 14 2.8895 3.4442 6.0531 24 6 1.9547 3.1413 7.6359 25 6 4.1917 2.1291 5.8397 26 6 3.7035 5.1185 6.1234 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8294 -0.0617 -2.9495 33 1 2.2719 2.1231 1.9978 34 1 -2.3009 3.1321 -0.4347 35 1 -4.1651 3.6885 1.9895 36 1 -3.4428 5.2843 2.3060 37 1 -3.7460 4.7608 0.6320 38 1 -1.5474 4.3866 3.5744 39 1 1.4784 2.1616 7.5948 40 1 2.6459 3.1738 8.4780 41 1 1.1928 3.9107 7.7608 42 1 4.7387 2.3064 4.9137 43 1 4.8831 2.1624 6.6816 44 1 3.7155 1.1496 5.7985 45 1 2.9416 5.8880 6.2484 46 1 4.3943 5.1516 6.9659 47 1 4.2505 5.2958 5.1973 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161053216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:33 Heat of formation + Delta-G solvation = 31.851960 kcal Electronic energy + Delta-G solvation = -23702.534275 eV Core-core repulsion = 20507.920869 eV Total energy + Delta-G solvation = -3194.613406 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.89905 -36.26131 -33.88797 -33.23639 -31.80611 -30.75493 -29.69607 -28.72913 -27.61105 -27.52495 -27.27923 -25.39132 -23.72541 -22.83362 -21.51529 -19.61935 -17.91144 -17.18344 -16.24093 -15.86783 -14.74249 -14.48597 -14.41619 -13.97369 -13.60159 -13.40259 -13.17719 -13.11971 -13.10142 -12.84313 -12.53907 -12.51792 -12.44313 -12.32875 -12.24083 -12.17373 -11.80544 -11.58154 -11.24797 -11.16383 -11.12049 -10.90577 -10.86466 -10.57477 -10.34124 -10.16745 -10.04160 -9.75208 -9.64485 -9.36693 -8.98379 -8.72730 -8.68379 -8.39027 -6.72165 -6.11710 -4.20188 1.31877 1.94501 2.45685 2.65236 2.66835 3.23716 3.31469 3.31661 3.34913 3.49131 3.70008 4.09673 4.38361 4.55370 5.02579 5.18543 5.20165 5.22622 5.42345 5.49133 5.51823 5.55067 5.57642 5.59642 5.65832 5.69435 5.76166 5.79462 6.09613 6.16361 6.23046 6.33809 6.39939 6.41903 6.46462 6.48183 6.62608 6.66969 6.99618 7.07849 7.21016 7.39744 7.58478 7.69654 7.84161 7.99619 8.01291 8.24054 8.45676 8.76409 9.02732 9.45980 10.93521 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.007588 B = 0.005125 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.993180 B = 5462.515407 C = 8420.343468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.055 0.945 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.685 5.685 14 C 0.437 3.563 15 N -0.522 5.522 16 C 0.167 3.833 17 C -0.236 4.236 18 C -0.089 4.089 19 C -0.007 4.007 20 C -0.152 4.152 21 C -0.097 4.097 22 C -0.438 4.438 23 Si 1.142 2.858 24 C -0.449 4.449 25 C -0.453 4.453 26 C -0.451 4.451 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.099 0.901 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.399 0.601 34 H 0.149 0.851 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 6.733 14.975 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.073 0.927 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.308 5.308 14 C 0.197 3.803 15 N -0.239 5.239 16 C 0.005 3.995 17 C -0.242 4.242 18 C -0.147 4.147 19 C -0.033 4.033 20 C -0.160 4.160 21 C -0.097 4.097 22 C -0.474 4.474 23 Si 1.328 2.672 24 C -0.557 4.557 25 C -0.561 4.561 26 C -0.558 4.558 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.118 0.882 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.796 6.071 13.715 16.080 hybrid contribution 0.706 0.310 0.592 0.972 sum -5.090 6.381 14.307 16.472 Atomic orbital electron populations 1.21829 0.98443 0.97746 1.01026 1.21934 0.92672 0.99879 1.02087 1.18862 0.94054 0.89144 0.80749 0.92694 1.21284 0.90865 1.38817 1.06231 0.92229 1.24846 0.98516 0.94785 0.95352 1.69898 1.34947 1.37746 1.09345 0.86431 0.85017 0.77781 0.78129 1.19741 1.20848 1.20862 1.45599 1.10808 1.55737 1.18654 1.18556 0.87281 0.87160 0.87336 1.67592 1.04199 1.23030 1.29072 1.22438 0.91348 0.89800 0.95957 1.20280 0.98679 1.09095 0.96115 1.20447 0.92817 0.99503 1.01941 1.21072 0.90912 0.93915 0.97369 1.16398 0.95348 1.11872 0.92428 1.20728 0.96246 0.98184 0.94588 1.35538 1.03439 1.03397 1.05049 0.76879 0.62772 0.67045 0.60496 1.26092 1.08702 1.05221 1.15636 1.26117 1.12136 1.12758 1.05068 1.26109 1.07502 1.17524 1.04697 0.94718 0.92633 0.96114 0.88242 0.95371 0.92671 0.76532 0.83362 0.92295 0.92472 0.92024 0.85831 0.90980 0.90861 0.91138 0.90589 0.90961 0.90879 0.91155 0.90903 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.44 37.16 0.31 -2.62 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.99 2.25 -69.08 -0.16 6.83 16 4 H 0.06 1.57 7.54 -51.93 -0.39 1.18 16 5 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.04 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -15.53 5.07 -54.81 -0.28 -15.81 16 14 C 0.44 9.21 6.05 -154.88 -0.94 8.28 16 15 N -0.52 -10.69 6.40 -12.16 -0.08 -10.77 16 16 C 0.17 2.76 10.83 -17.51 -0.19 2.57 16 17 C -0.24 -3.47 5.89 -104.53 -0.62 -4.08 16 18 C -0.09 -0.95 10.03 36.01 0.36 -0.59 16 19 C -0.01 -0.12 9.57 -38.92 -0.37 -0.49 16 20 C -0.15 -2.86 5.76 -106.61 -0.61 -3.47 16 21 C -0.10 -1.73 12.03 -38.84 -0.47 -2.20 16 22 C -0.44 -6.59 12.14 29.55 0.36 -6.23 16 23 Si 1.14 10.33 14.26 -169.99 -2.42 7.91 16 24 C -0.45 -3.61 8.65 101.05 0.87 -2.74 16 25 C -0.45 -4.51 8.65 101.05 0.87 -3.63 16 26 C -0.45 -3.94 8.65 101.05 0.87 -3.07 16 27 H 0.03 0.75 5.59 -51.93 -0.29 0.46 16 28 H 0.05 1.25 7.67 -51.93 -0.40 0.85 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.40 8.71 7.38 -40.82 -0.30 8.41 16 34 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.07 0.61 7.96 -51.92 -0.41 0.19 16 40 H 0.07 0.48 7.96 -51.93 -0.41 0.06 16 41 H 0.07 0.56 7.96 -51.93 -0.41 0.14 16 42 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 43 H 0.07 0.58 7.96 -51.93 -0.41 0.17 16 44 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 45 H 0.07 0.60 7.96 -51.93 -0.41 0.19 16 46 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 47 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -30.82 394.87 -9.37 -40.18 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.91 Total: 8.41 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -0.23 Total: -27.72 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.27 Total: -50.62 kcal Atomic # 14 Polarization: 31.24 SS G_CDS: -7.44 Total: 23.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.82 -9.37 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.036 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds