Wall clock time and date at job start Tue Mar 31 2020 11:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 C 1.50703 * 109.46936 * 119.99327 * 2 1 3 5 5 O 1.21283 * 119.99757 * 119.99629 * 4 2 1 6 6 N 1.34775 * 120.00058 * 300.00582 * 4 2 1 7 7 C 1.46500 * 119.99996 * 179.97438 * 6 4 2 8 8 C 1.52992 * 109.47237 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47299 * 180.02562 * 8 7 6 10 10 C 1.29451 * 117.69445 * 95.00025 * 9 8 7 11 11 C 1.50330 * 123.65007 * 181.14193 * 10 9 8 12 12 N 1.47132 * 109.10280 * 348.53955 * 11 10 9 13 13 C 1.36936 * 121.53492 * 223.15848 * 12 11 10 14 14 H 1.07997 * 120.00400 * 156.23953 * 13 12 11 15 15 C 1.38816 * 119.99772 * 336.23726 * 13 12 11 16 16 N 1.31620 * 119.99998 * 344.47294 * 15 13 12 17 17 Si 1.86801 * 119.99831 * 164.47294 * 15 13 12 18 18 H 1.48498 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47086 * 119.99888 * 17 15 13 20 20 H 1.48500 * 109.46988 * 240.00040 * 17 15 13 21 21 C 1.47334 * 117.08742 * 43.37930 * 12 11 10 22 22 C 1.49968 * 117.69162 * 275.02169 * 9 8 7 23 23 C 1.52992 * 109.47261 * 239.99515 * 2 1 3 24 24 F 1.39901 * 109.47363 * 300.00036 * 23 2 1 25 25 F 1.39900 * 109.47016 * 60.00218 * 23 2 1 26 26 H 1.09000 * 109.47683 * 300.00480 * 1 2 3 27 27 H 1.09006 * 109.47262 * 60.00481 * 1 2 3 28 28 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46533 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46539 * 299.99341 * 3 2 1 31 31 H 1.08992 * 109.47217 * 59.99602 * 3 2 1 32 32 H 0.96997 * 120.00154 * 359.97438 * 6 4 2 33 33 H 1.09007 * 109.47130 * 59.99357 * 7 6 4 34 34 H 1.09002 * 109.47078 * 300.00217 * 7 6 4 35 35 H 1.08995 * 109.47291 * 60.00248 * 8 7 6 36 36 H 1.08996 * 109.47224 * 300.00018 * 8 7 6 37 37 H 1.07993 * 118.17889 * 0.85731 * 10 9 8 38 38 H 1.08999 * 109.52397 * 108.64692 * 11 10 9 39 39 H 1.09002 * 109.52075 * 228.83522 * 11 10 9 40 40 H 0.97003 * 119.99843 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.77605 * 178.39713 * 21 12 11 42 42 H 1.09005 * 109.78096 * 57.59157 * 21 12 11 43 43 H 1.08993 * 109.31804 * 281.28826 * 22 9 8 44 44 H 1.09003 * 109.31610 * 40.71757 * 22 9 8 45 45 H 1.08995 * 109.47291 * 179.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.1944 -0.9406 3.6509 8 6 1.6850 -0.2189 4.9000 9 6 2.1873 -0.9291 6.1305 10 6 3.2733 -0.4871 6.6791 11 6 3.9057 -1.1082 7.8933 12 7 2.9670 -2.0751 8.4838 13 6 2.7688 -2.1461 9.8369 14 1 1.8480 -2.5538 10.2272 15 6 3.7516 -1.6942 10.7070 16 7 4.9746 -1.4861 10.2674 17 14 3.3381 -1.3814 12.5016 18 1 1.9051 -1.6889 12.7403 19 1 4.1812 -2.2495 13.3623 20 1 3.5993 0.0434 12.8286 21 6 2.2518 -2.9684 7.5558 22 6 1.3940 -2.0985 6.6329 23 6 2.0400 -0.7213 -1.2491 24 9 1.5737 -2.0403 -1.2491 25 9 1.5737 -0.0619 -2.3914 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.1492 0.5391 2.5435 33 1 3.2845 -0.9410 3.6511 34 1 1.8308 -1.9681 3.6507 35 1 0.5950 -0.2181 4.9000 36 1 2.0490 0.8085 4.8999 37 1 3.7543 0.3730 6.2374 38 1 4.8252 -1.6175 7.6049 39 1 4.1322 -0.3314 8.6237 40 1 5.6612 -1.1700 10.8753 41 1 1.6137 -3.6501 8.1183 42 1 2.9695 -3.5371 6.9645 43 1 0.5262 -1.7356 7.1835 44 1 1.0562 -2.6956 5.7859 45 1 3.1300 -0.7209 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161173033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:29 Heat of formation + Delta-G solvation = -117.191969 kcal Electronic energy + Delta-G solvation = -26642.126238 eV Core-core repulsion = 22523.613825 eV Total energy + Delta-G solvation = -4118.512413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -49.26132 -47.19902 -40.33724 -37.97389 -35.71889 -35.55130 -33.54254 -31.37948 -29.86925 -28.73814 -28.01279 -26.71519 -25.54789 -23.63178 -22.76800 -22.22043 -20.99458 -19.96379 -18.25249 -17.62690 -17.54125 -17.17184 -16.45997 -15.95492 -15.70167 -15.38663 -15.02072 -14.56783 -14.36633 -14.06654 -13.89878 -13.69246 -13.56570 -13.54133 -13.41654 -13.11714 -12.75163 -12.74893 -12.62733 -12.53569 -12.25247 -12.03573 -11.80798 -11.60256 -11.44631 -11.08004 -11.02722 -10.92598 -10.75153 -10.32327 -10.29052 -10.02850 -9.81818 -9.55772 -9.27036 -8.66853 -7.94813 -6.73749 -5.79388 -3.17938 2.28578 2.62673 2.97768 3.31864 3.36892 3.44467 3.46675 3.84990 4.01723 4.02357 4.43060 4.49149 4.67576 4.80683 4.99731 5.05513 5.07680 5.13688 5.15877 5.23112 5.24123 5.39016 5.52225 5.53556 5.60446 5.61602 5.75551 5.95827 5.99266 6.11662 6.18332 6.23840 6.38499 6.54173 6.77998 6.89735 7.16100 7.21698 7.31617 7.39141 7.74695 7.86574 7.88366 8.38376 9.19889 9.82764 10.41673 11.31066 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.037900 B = 0.002197 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.602826 B =12739.424282 C =12833.727506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.143 4.143 4 C 0.525 3.475 5 O -0.528 6.528 6 N -0.721 5.721 7 C 0.123 3.877 8 C -0.091 4.091 9 C -0.143 4.143 10 C -0.145 4.145 11 C 0.196 3.804 12 N -0.596 5.596 13 C -0.244 4.244 14 H 0.069 0.931 15 C -0.003 4.003 16 N -0.909 5.909 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.142 3.858 22 C -0.091 4.091 23 C 0.286 3.714 24 F -0.192 7.192 25 F -0.202 7.202 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.253 0.747 41 H 0.056 0.944 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 7.659 -22.093 24.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.201 4.201 4 C 0.309 3.691 5 O -0.404 6.404 6 N -0.372 5.372 7 C 0.001 3.999 8 C -0.129 4.129 9 C -0.144 4.144 10 C -0.165 4.165 11 C 0.071 3.929 12 N -0.319 5.319 13 C -0.373 4.373 14 H 0.087 0.913 15 C -0.201 4.201 16 N -0.555 5.555 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.016 3.984 22 C -0.130 4.130 23 C 0.232 3.768 24 F -0.173 7.173 25 F -0.184 7.184 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.700 6.958 -22.054 24.373 hybrid contribution -0.445 0.630 0.877 1.167 sum -8.145 7.588 -21.177 23.924 Atomic orbital electron populations 1.21871 0.90441 1.04037 1.03950 1.21900 1.00048 0.98501 0.93570 1.21867 1.02269 0.91649 1.04296 1.19902 0.80545 0.84379 0.84302 1.90790 1.37439 1.25585 1.86566 1.46001 1.53550 1.32041 1.05651 1.21507 0.99727 0.96605 0.82091 1.20903 1.00758 0.98704 0.92525 1.20211 0.98258 0.99518 0.96390 1.23123 0.95971 0.98413 0.98963 1.19732 0.90405 0.92615 0.90179 1.44182 1.48748 1.36818 1.02142 1.19228 0.99026 1.38047 0.81008 0.91320 1.24995 0.94708 1.02384 0.97975 1.70027 1.00587 1.50318 1.34566 0.86184 0.77732 0.77630 0.85027 1.20329 1.21749 1.21627 1.20959 0.94013 0.91772 0.91684 1.20758 0.98424 0.95326 0.98508 1.21454 0.98302 0.75158 0.81887 1.93010 1.90809 1.36897 1.96566 1.92967 1.91228 1.81049 1.53116 0.90816 0.90408 0.91028 0.91160 0.90209 0.90568 0.76601 0.91053 0.91026 0.91434 0.91513 0.89088 0.94401 0.89097 0.93685 0.92537 0.95864 0.91939 0.92892 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.13 37.16 0.30 -0.64 16 2 C -0.14 -1.06 0.58 -155.66 -0.09 -1.15 16 3 C -0.14 -0.75 8.25 37.16 0.31 -0.44 16 4 C 0.52 5.73 6.36 -10.98 -0.07 5.66 16 5 O -0.53 -8.06 15.41 5.55 0.09 -7.97 16 6 N -0.72 -6.78 5.34 -60.29 -0.32 -7.10 16 7 C 0.12 1.48 5.66 -4.05 -0.02 1.46 16 8 C -0.09 -1.10 5.32 -27.89 -0.15 -1.25 16 9 C -0.14 -2.38 5.11 -100.99 -0.52 -2.90 16 10 C -0.15 -2.74 9.47 -35.78 -0.34 -3.08 16 11 C 0.20 4.67 5.25 -5.03 -0.03 4.64 16 12 N -0.60 -15.01 3.01 -173.56 -0.52 -15.53 16 13 C -0.24 -6.69 9.71 -15.06 -0.15 -6.84 16 14 H 0.07 1.85 7.88 -52.49 -0.41 1.44 16 15 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 16 N -0.91 -26.30 11.07 55.49 0.61 -25.69 16 17 Si 0.90 21.67 29.58 -169.99 -5.03 16.65 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.14 2.99 6.57 -3.53 -0.02 2.97 16 22 C -0.09 -1.58 5.95 -28.18 -0.17 -1.75 16 23 C 0.29 2.62 3.79 37.15 0.14 2.76 16 24 F -0.19 -2.34 15.90 2.25 0.04 -2.30 16 25 F -0.20 -1.81 16.30 2.25 0.04 -1.77 16 26 H 0.07 0.35 7.56 -51.93 -0.39 -0.05 16 27 H 0.08 0.44 7.80 -51.93 -0.41 0.03 16 28 H 0.07 0.57 7.80 -51.93 -0.41 0.16 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.35 7.80 -51.93 -0.41 -0.06 16 31 H 0.08 0.30 7.56 -51.93 -0.39 -0.09 16 32 H 0.40 2.57 7.31 -40.82 -0.30 2.27 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 37 H 0.09 1.51 7.73 -52.49 -0.41 1.10 16 38 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.09 2.41 6.39 -51.93 -0.33 2.07 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.06 1.15 7.96 -51.92 -0.41 0.74 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.12 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -32.33 368.08 -7.64 -39.97 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.20 Total: -1.08 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.89 Total: -0.72 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.23 Total: -48.33 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.07 Total: -4.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.33 -7.64 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161173033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.219 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds