Wall clock time and date at job start Tue Mar 31 2020 11:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47102 * 2 1 4 4 C 1.53008 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46967 * 179.97438 * 4 3 2 6 6 C 1.36901 * 119.99848 * 269.99837 * 5 4 3 7 7 H 1.07997 * 119.99958 * 141.51347 * 6 5 4 8 8 C 1.38820 * 120.00113 * 321.50772 * 6 5 4 9 9 N 1.31558 * 119.99992 * 156.98735 * 8 6 5 10 10 Si 1.86803 * 119.99767 * 336.99546 * 8 6 5 11 11 H 1.48502 * 109.47306 * 95.56329 * 10 8 6 12 12 H 1.48504 * 109.46844 * 215.55537 * 10 8 6 13 13 H 1.48499 * 109.47298 * 335.55705 * 10 8 6 14 14 C 1.38871 * 119.99962 * 90.00065 * 5 4 3 15 15 C 1.38971 * 119.64720 * 170.55298 * 14 5 4 16 16 C 1.39654 * 118.92263 * 180.23165 * 15 14 5 17 17 C 1.43199 * 120.88147 * 179.72699 * 16 15 14 18 18 C 9.40331 * 121.03144 * 18.14766 * 2 1 3 19 19 Si 9.80916 * 154.06832 * 216.88342 * 3 1 2 20 20 C 1.86309 * 109.47114 * 151.48672 * 19 18 17 21 21 C 1.86297 * 109.47189 * 271.48612 * 19 18 17 22 22 C 1.86298 * 109.47259 * 31.49209 * 19 18 17 23 23 C 1.40175 * 118.23464 * 359.50374 * 16 15 14 24 24 C 1.37849 * 119.17242 * 0.49517 * 23 16 15 25 25 N 1.31960 * 121.01267 * 359.74755 * 24 23 16 26 26 H 1.08998 * 109.46912 * 300.00634 * 1 2 3 27 27 H 1.09001 * 109.46951 * 59.99921 * 1 2 3 28 28 H 1.09002 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47468 * 240.00085 * 2 1 3 30 30 H 1.09001 * 109.47103 * 119.99546 * 2 1 3 31 31 H 1.08997 * 109.47059 * 60.00157 * 3 2 1 32 32 H 1.09001 * 109.47282 * 299.99876 * 3 2 1 33 33 H 1.08992 * 109.47268 * 59.99689 * 4 3 2 34 34 H 1.08998 * 109.46454 * 299.99873 * 4 3 2 35 35 H 0.97001 * 120.00174 * 180.02562 * 9 8 6 36 36 H 1.07999 * 120.53898 * 359.94836 * 15 14 5 37 37 H 1.09005 * 109.46603 * 60.00230 * 20 19 18 38 38 H 1.08999 * 109.46880 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47110 * 300.00452 * 20 19 18 40 40 H 1.09003 * 109.46826 * 60.00658 * 21 19 18 41 41 H 1.09006 * 109.46828 * 179.97438 * 21 19 18 42 42 H 1.08997 * 109.47211 * 299.99920 * 21 19 18 43 43 H 1.09000 * 109.47129 * 59.99447 * 22 19 18 44 44 H 1.08997 * 109.47560 * 179.97438 * 22 19 18 45 45 H 1.09009 * 109.46979 * 299.99967 * 22 19 18 46 46 H 1.07995 * 120.41736 * 180.26869 * 23 16 15 47 47 H 1.08005 * 119.49429 * 179.77048 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2861 3.4687 -1.1872 7 1 4.0386 4.5150 -1.2890 8 6 4.8352 2.7779 -2.2588 9 7 4.6485 3.2121 -3.4865 10 14 5.8389 1.2315 -1.9574 11 1 4.9675 0.0385 -2.1077 12 1 6.9480 1.1615 -2.9425 13 1 6.3993 1.2652 -0.5826 14 6 4.2904 3.4787 1.2011 15 6 4.9357 4.7095 1.2001 16 6 5.1656 5.3526 2.4183 17 6 5.8320 6.6191 2.4665 18 6 6.3775 7.6567 2.5097 19 14 7.2618 9.3371 2.5745 20 6 6.1983 10.6305 1.7577 21 6 7.5632 9.8121 4.3505 22 6 8.8908 9.2166 1.6787 23 6 4.7224 4.7276 3.5921 24 6 4.0899 3.5059 3.5052 25 7 3.8933 2.9235 2.3374 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9288 -0.8908 34 1 3.9336 0.9285 0.8891 35 1 5.0319 2.7292 -4.2353 36 1 5.2584 5.1592 0.2727 37 1 5.2451 10.7010 2.2819 38 1 6.7054 11.5946 1.7954 39 1 6.0218 10.3526 0.7186 40 1 8.1855 9.0554 4.8284 41 1 8.0710 10.7759 4.3877 42 1 6.6101 9.8827 4.8746 43 1 8.7144 8.9386 0.6397 44 1 9.3980 10.1807 1.7155 45 1 9.5131 8.4598 2.1566 46 1 4.8778 5.1956 4.5529 47 1 3.7496 3.0179 4.4066 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:32 Heat of formation + Delta-G solvation = 41.259064 kcal Electronic energy + Delta-G solvation = -23096.146251 eV Core-core repulsion = 19901.940768 eV Total energy + Delta-G solvation = -3194.205483 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.38635 -36.74702 -34.22502 -33.58894 -32.18943 -30.22368 -29.71390 -28.76414 -27.97481 -27.62255 -27.58132 -24.83480 -23.71839 -22.44726 -21.24521 -20.66976 -18.06563 -17.05275 -15.98021 -15.62389 -15.04610 -14.76320 -14.52469 -13.99690 -13.78345 -13.43995 -13.24696 -13.17550 -13.15584 -13.04409 -12.89790 -12.75127 -12.53399 -12.49527 -12.30111 -12.27835 -11.96496 -11.64752 -11.35321 -11.27668 -11.20106 -11.07663 -10.68050 -10.60785 -10.46666 -10.41629 -10.12206 -10.04841 -9.81715 -9.64953 -9.28961 -8.76269 -8.58209 -8.41924 -6.90062 -6.58686 -4.02786 1.57753 2.20532 2.45157 2.63335 2.70908 3.02312 3.17892 3.25614 3.28556 3.50179 3.86330 4.04260 4.27342 4.69087 4.97995 5.29383 5.35938 5.38259 5.47040 5.48332 5.50608 5.54378 5.54622 5.57649 5.59706 5.60236 5.83027 5.92380 6.12652 6.12867 6.16121 6.17676 6.21944 6.25806 6.27236 6.33579 6.37033 6.41668 6.51960 6.62118 6.76489 6.82750 6.96560 7.10718 7.38343 7.51774 8.00972 8.03135 8.42834 8.77832 9.09070 9.52384 10.51124 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003177 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.524326 B = 8809.990167 C = 9970.504712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.125 4.125 4 C 0.115 3.885 5 N -0.444 5.444 6 C -0.319 4.319 7 H 0.103 0.897 8 C 0.067 3.933 9 N -0.853 5.853 10 Si 0.877 3.123 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.261 1.261 14 C 0.382 3.618 15 C -0.203 4.203 16 C 0.065 3.935 17 C -0.104 4.104 18 C -0.427 4.427 19 Si 1.144 2.856 20 C -0.451 4.451 21 C -0.449 4.449 22 C -0.452 4.452 23 C -0.266 4.266 24 C 0.151 3.849 25 N -0.563 5.563 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.277 0.723 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 7.010 10.708 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.008 4.008 5 N -0.138 5.138 6 C -0.447 4.447 7 H 0.120 0.880 8 C -0.142 4.142 9 N -0.487 5.487 10 Si 0.704 3.296 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.185 1.185 14 C 0.144 3.856 15 C -0.230 4.230 16 C 0.058 3.942 17 C -0.104 4.104 18 C -0.462 4.462 19 Si 1.329 2.671 20 C -0.559 4.559 21 C -0.557 4.557 22 C -0.559 4.559 23 C -0.292 4.292 24 C -0.010 4.010 25 N -0.284 5.284 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.133 0.867 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.068 5.945 10.112 11.910 hybrid contribution 0.763 -0.308 -0.057 0.825 sum 2.831 5.637 10.055 11.870 Atomic orbital electron populations 1.21735 0.96237 1.00790 1.01729 1.21475 0.95534 0.97579 1.01469 1.21859 0.96055 0.95790 1.02635 1.21626 0.94114 0.84255 1.00791 1.42532 1.58156 1.11426 1.01666 1.18953 1.41890 0.98262 0.85583 0.87998 1.25370 0.95804 0.98329 0.94653 1.69816 1.40179 1.40446 0.98212 0.86914 0.80586 0.82767 0.79341 1.19880 1.21306 1.18534 1.18491 0.90888 0.90187 0.86065 1.21413 1.06341 0.97574 0.97623 1.16162 0.95180 0.89169 0.93677 1.21110 0.97429 0.93929 0.97943 1.35640 1.02574 1.05792 1.02228 0.76888 0.64744 0.58562 0.66859 1.26102 1.09959 1.11595 1.08211 1.26089 1.05107 1.05336 1.19141 1.26107 1.16500 1.04464 1.08849 1.21346 1.11229 0.99626 0.97000 1.21972 0.93319 0.91296 0.94368 1.67133 1.26394 1.37218 0.97609 0.92927 0.92841 0.93348 0.92458 0.92280 0.91658 0.91515 0.92065 0.91344 0.91270 0.84664 0.91004 0.90868 0.90757 0.90997 0.90835 0.90990 0.90750 0.90874 0.90998 0.86737 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.12 -2.42 5.54 -26.73 -0.15 -2.56 16 4 C 0.12 2.53 4.17 -4.04 -0.02 2.52 16 5 N -0.44 -10.85 2.25 -115.09 -0.26 -11.11 16 6 C -0.32 -8.49 8.65 -15.07 -0.13 -8.62 16 7 H 0.10 2.90 7.41 -52.49 -0.39 2.51 16 8 C 0.07 1.77 5.28 -17.45 -0.09 1.68 16 9 N -0.85 -23.52 13.96 55.49 0.77 -22.75 16 10 Si 0.88 20.66 25.13 -169.99 -4.27 16.38 16 11 H -0.27 -6.10 6.67 56.52 0.38 -5.72 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.26 -6.33 7.11 56.52 0.40 -5.92 16 14 C 0.38 9.00 7.30 -155.08 -1.13 7.87 16 15 C -0.20 -4.69 9.01 -38.78 -0.35 -5.04 16 16 C 0.07 1.36 5.75 -106.72 -0.61 0.75 16 17 C -0.10 -1.99 13.31 -38.85 -0.52 -2.50 16 18 C -0.43 -6.61 12.14 29.54 0.36 -6.25 16 19 Si 1.14 9.91 14.26 -169.99 -2.42 7.49 16 20 C -0.45 -3.88 8.65 101.05 0.87 -3.01 16 21 C -0.45 -3.46 8.65 101.05 0.87 -2.59 16 22 C -0.45 -3.96 8.65 101.05 0.87 -3.08 16 23 C -0.27 -4.96 9.85 -39.00 -0.38 -5.35 16 24 C 0.15 2.79 11.16 -17.64 -0.20 2.59 16 25 N -0.56 -12.16 9.21 -12.52 -0.12 -12.27 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.06 1.39 3.45 -51.93 -0.18 1.21 16 34 H 0.07 1.45 7.53 -51.93 -0.39 1.06 16 35 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.14 3.25 6.72 -52.49 -0.35 2.90 16 37 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 38 H 0.07 0.50 7.96 -51.93 -0.41 0.08 16 39 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 40 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 41 H 0.07 0.45 7.96 -51.93 -0.41 0.03 16 42 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 43 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 44 H 0.07 0.50 7.96 -51.93 -0.41 0.09 16 45 H 0.07 0.65 7.96 -51.92 -0.41 0.23 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -30.28 397.90 -8.69 -38.97 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.00 Total: 4.63 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -0.39 Total: -27.33 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.40 Total: -46.13 kcal Atomic # 14 Polarization: 30.57 SS G_CDS: -6.70 Total: 23.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.28 -8.69 -38.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.230 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds